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Searched refs:priorParams (Results 1 – 8 of 8) sorted by relevance

/dports/biology/mrbayes/MrBayes-3.2.7/src/
H A Dcommand.c1292 calibrationPtr->priorParams[0] = defaultCalibration.priorParams[0]; in DoCalibrateParm()
1293 calibrationPtr->priorParams[1] = defaultCalibration.priorParams[1]; in DoCalibrateParm()
1294 calibrationPtr->priorParams[2] = defaultCalibration.priorParams[2]; in DoCalibrateParm()
1307 priorParams[0] = priorParams[1] = priorParams[2] = -1.0; in DoCalibrateParm()
1386 priorParams[0] = tempD; in DoCalibrateParm()
1521 calibrationPtr->priorParams[0] = priorParams[0]; in DoCalibrateParm()
1522 calibrationPtr->priorParams[1] = priorParams[1]; in DoCalibrateParm()
1523 calibrationPtr->priorParams[2] = priorParams[2]; in DoCalibrateParm()
2517 nodeCalibration[numDefinedConstraints].priorParams[0] = defaultCalibration.priorParams[0]; in DoConstraint()
2518 nodeCalibration[numDefinedConstraints].priorParams[1] = defaultCalibration.priorParams[1]; in DoConstraint()
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H A Dbayes.h487 typedef MrBFlt (*LnPriorProbFxn)(MrBFlt val, MrBFlt *priorParams);
490 typedef MrBFlt (*LnPriorRatioFxn)(MrBFlt newVal, MrBFlt oldVal, MrBFlt *priorParams);
540 MrBFlt priorParams[3]; member
715 MrBFlt* priorParams; /* pointer to the prior parameters */ member
H A Dbayes.c804 defaultModel.treeAgePr.priorParams[0] = 1.0; in InitializeMrBayes()
805 defaultModel.treeAgePr.priorParams[1] = 1.0; in InitializeMrBayes()
806 defaultModel.treeAgePr.priorParams[2] = -1.0; in InitializeMrBayes()
H A Dmodel.c18311 p->priorParams = NULL; in SetModelParams()
19498 p->priorParams = mp->popSizeUni; in SetModelParams()
19505 p->priorParams = mp->popSizeNormal; in SetModelParams()
19519 p->priorParams = mp->popSizeGamma; in SetModelParams()
19526 p->priorParams = &mp->popSizeFix; in SetModelParams()
19555 p->priorParams = mp->growthUni; in SetModelParams()
19564 p->priorParams = &mp->growthExp; in SetModelParams()
19573 p->priorParams = mp->growthNorm; in SetModelParams()
19582 p->priorParams = &mp->growthFix; in SetModelParams()
19898 p->priorParams = &mp->clockRateExp; in SetModelParams()
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H A Dmcmc.c7435 … (*lnPriorRatio) += p->calibration->LnPriorRatio(p->age, q->age, p->calibration->priorParams); in LogClockTreePriorRatio()
8078 … lnPrior += q->calibration->LnPriorProb(q->age, q->calibration->priorParams); in LogPrior()
8173 lnPrior += p->LnPriorProb(st[i], p->priorParams); in LogPrior()
8309 lnPrior += p->LnPriorProb(st[0], p->priorParams); in LogPrior()
8440 (*prob) += mp->treeAgePr.LnPriorProb(tmrca, mp->treeAgePr.priorParams); in LnBirthDeathPriorPrRandom()
8515 (*prob) += mp->treeAgePr.LnPriorProb(tmrca, mp->treeAgePr.priorParams); in LnBirthDeathPriorPrDiversity()
8590 (*prob) += mp->treeAgePr.LnPriorProb(tmrca, mp->treeAgePr.priorParams); in LnBirthDeathPriorPrCluster()
8842 (*prob) += mp->treeAgePr.LnPriorProb(tmrca, mp->treeAgePr.priorParams); in LnFossilizedBDPriorFossilTip()
9088 (*prob) += mp->treeAgePr.LnPriorProb(tmrca, mp->treeAgePr.priorParams); in LnFossilizedBDPriorRandom()
9301 (*prob) += mp->treeAgePr.LnPriorProb(tmrca, mp->treeAgePr.priorParams); in LnFossilizedBDPriorDiversity()
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H A Dproposal.c5207 (*lnPriorRatio) = newLnPrior - oldLnPrior + param->LnPriorRatio(newG, oldG, param->priorParams); in Move_Growth_M()
8739 …richletParameters[3], *newSubVals, *oldSubVals, *newFreqs, *oldFreqs, *priorParams, sum, alpha, x,… in Move_OmegaCat() local
8761 priorParams = newSubVals + (numBetaAndGammaCats + 2); in Move_OmegaCat()
8767 priorParams = newFreqs + 3; in Move_OmegaCat()
8821 x += (priorParams[i]-1.0)*log(newFreqs[i]); in Move_OmegaCat()
8823 y += (priorParams[i]-1.0)*log(oldFreqs[i]); in Move_OmegaCat()
13656 (*lnPriorRatio) = param->LnPriorRatio(newN, oldN, param->priorParams); in Move_PopSize_M()
13695 (*lnPriorRatio) = param->LnPriorRatio(newX, oldX, param->priorParams); in Move_PosRealLognormal()
13748 (*lnPriorRatio) = param->LnPriorRatio(newX, oldX, param->priorParams); in Move_PosRealMultiplier()
16245 (*lnPriorRatio) = param->LnPriorRatio(newX, oldX, param->priorParams); in Move_RealNormal()
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H A Dutils.c4203 p->nodeDepth = p->age = p->calibration->priorParams[0]; in InitCalibratedBrlens()
4856 …if (p->calibration->prior == fixed && fabs((p->age - p->calibration->priorParams[0])/p->age) > 0.0… in IsTreeConsistent()
4859 p->index, p->age, p->calibration->priorParams[0]); in IsTreeConsistent()
7306 …if (p->calibration->prior == fixed && fabs((p->age - p->calibration->priorParams[0])/p->age) > 0.0… in SetTreeNodeAges()
7309 p->index, p->age, p->calibration->priorParams[0]); in SetTreeNodeAges()
/dports/x11-toolkits/open-motif/motif-2.3.8/lib/Xm/
H A DSpinB.c102 String *priorParams, Cardinal *priorCount );
1362 String *priorParams, /* unused */ in SpinBPrior() argument