Searched refs:priorParams (Results 1 – 8 of 8) sorted by relevance
/dports/biology/mrbayes/MrBayes-3.2.7/src/ |
H A D | command.c | 1292 calibrationPtr->priorParams[0] = defaultCalibration.priorParams[0]; in DoCalibrateParm() 1293 calibrationPtr->priorParams[1] = defaultCalibration.priorParams[1]; in DoCalibrateParm() 1294 calibrationPtr->priorParams[2] = defaultCalibration.priorParams[2]; in DoCalibrateParm() 1307 priorParams[0] = priorParams[1] = priorParams[2] = -1.0; in DoCalibrateParm() 1386 priorParams[0] = tempD; in DoCalibrateParm() 1521 calibrationPtr->priorParams[0] = priorParams[0]; in DoCalibrateParm() 1522 calibrationPtr->priorParams[1] = priorParams[1]; in DoCalibrateParm() 1523 calibrationPtr->priorParams[2] = priorParams[2]; in DoCalibrateParm() 2517 nodeCalibration[numDefinedConstraints].priorParams[0] = defaultCalibration.priorParams[0]; in DoConstraint() 2518 nodeCalibration[numDefinedConstraints].priorParams[1] = defaultCalibration.priorParams[1]; in DoConstraint() [all …]
|
H A D | bayes.h | 487 typedef MrBFlt (*LnPriorProbFxn)(MrBFlt val, MrBFlt *priorParams); 490 typedef MrBFlt (*LnPriorRatioFxn)(MrBFlt newVal, MrBFlt oldVal, MrBFlt *priorParams); 540 MrBFlt priorParams[3]; member 715 MrBFlt* priorParams; /* pointer to the prior parameters */ member
|
H A D | bayes.c | 804 defaultModel.treeAgePr.priorParams[0] = 1.0; in InitializeMrBayes() 805 defaultModel.treeAgePr.priorParams[1] = 1.0; in InitializeMrBayes() 806 defaultModel.treeAgePr.priorParams[2] = -1.0; in InitializeMrBayes()
|
H A D | model.c | 18311 p->priorParams = NULL; in SetModelParams() 19498 p->priorParams = mp->popSizeUni; in SetModelParams() 19505 p->priorParams = mp->popSizeNormal; in SetModelParams() 19519 p->priorParams = mp->popSizeGamma; in SetModelParams() 19526 p->priorParams = &mp->popSizeFix; in SetModelParams() 19555 p->priorParams = mp->growthUni; in SetModelParams() 19564 p->priorParams = &mp->growthExp; in SetModelParams() 19573 p->priorParams = mp->growthNorm; in SetModelParams() 19582 p->priorParams = &mp->growthFix; in SetModelParams() 19898 p->priorParams = &mp->clockRateExp; in SetModelParams() [all …]
|
H A D | mcmc.c | 7435 … (*lnPriorRatio) += p->calibration->LnPriorRatio(p->age, q->age, p->calibration->priorParams); in LogClockTreePriorRatio() 8078 … lnPrior += q->calibration->LnPriorProb(q->age, q->calibration->priorParams); in LogPrior() 8173 lnPrior += p->LnPriorProb(st[i], p->priorParams); in LogPrior() 8309 lnPrior += p->LnPriorProb(st[0], p->priorParams); in LogPrior() 8440 (*prob) += mp->treeAgePr.LnPriorProb(tmrca, mp->treeAgePr.priorParams); in LnBirthDeathPriorPrRandom() 8515 (*prob) += mp->treeAgePr.LnPriorProb(tmrca, mp->treeAgePr.priorParams); in LnBirthDeathPriorPrDiversity() 8590 (*prob) += mp->treeAgePr.LnPriorProb(tmrca, mp->treeAgePr.priorParams); in LnBirthDeathPriorPrCluster() 8842 (*prob) += mp->treeAgePr.LnPriorProb(tmrca, mp->treeAgePr.priorParams); in LnFossilizedBDPriorFossilTip() 9088 (*prob) += mp->treeAgePr.LnPriorProb(tmrca, mp->treeAgePr.priorParams); in LnFossilizedBDPriorRandom() 9301 (*prob) += mp->treeAgePr.LnPriorProb(tmrca, mp->treeAgePr.priorParams); in LnFossilizedBDPriorDiversity() [all …]
|
H A D | proposal.c | 5207 (*lnPriorRatio) = newLnPrior - oldLnPrior + param->LnPriorRatio(newG, oldG, param->priorParams); in Move_Growth_M() 8739 …richletParameters[3], *newSubVals, *oldSubVals, *newFreqs, *oldFreqs, *priorParams, sum, alpha, x,… in Move_OmegaCat() local 8761 priorParams = newSubVals + (numBetaAndGammaCats + 2); in Move_OmegaCat() 8767 priorParams = newFreqs + 3; in Move_OmegaCat() 8821 x += (priorParams[i]-1.0)*log(newFreqs[i]); in Move_OmegaCat() 8823 y += (priorParams[i]-1.0)*log(oldFreqs[i]); in Move_OmegaCat() 13656 (*lnPriorRatio) = param->LnPriorRatio(newN, oldN, param->priorParams); in Move_PopSize_M() 13695 (*lnPriorRatio) = param->LnPriorRatio(newX, oldX, param->priorParams); in Move_PosRealLognormal() 13748 (*lnPriorRatio) = param->LnPriorRatio(newX, oldX, param->priorParams); in Move_PosRealMultiplier() 16245 (*lnPriorRatio) = param->LnPriorRatio(newX, oldX, param->priorParams); in Move_RealNormal() [all …]
|
H A D | utils.c | 4203 p->nodeDepth = p->age = p->calibration->priorParams[0]; in InitCalibratedBrlens() 4856 …if (p->calibration->prior == fixed && fabs((p->age - p->calibration->priorParams[0])/p->age) > 0.0… in IsTreeConsistent() 4859 p->index, p->age, p->calibration->priorParams[0]); in IsTreeConsistent() 7306 …if (p->calibration->prior == fixed && fabs((p->age - p->calibration->priorParams[0])/p->age) > 0.0… in SetTreeNodeAges() 7309 p->index, p->age, p->calibration->priorParams[0]); in SetTreeNodeAges()
|
/dports/x11-toolkits/open-motif/motif-2.3.8/lib/Xm/ |
H A D | SpinB.c | 102 String *priorParams, Cardinal *priorCount ); 1362 String *priorParams, /* unused */ in SpinBPrior() argument
|