Searched refs:qNumber (Results 1 – 9 of 9) sorted by relevance
/dports/biology/iqtree/IQ-TREE-2.0.6/pll/ |
H A D | evaluatePartialGenericSpecial.c | 131 qNumber = ti->qNumber; in computeVectorCAT_FLEX() local 318 assert(0 <= (trav->qNumber - mxtips) && (trav->qNumber - mxtips) < mxtips); in evaluatePartialCAT_FLEX() 503 qNumber = ti->qNumber; in computeVectorGTRCAT_BINARY() local 595 assert(0 <= (trav->qNumber - mxtips) && (trav->qNumber - mxtips) < mxtips); in evaluatePartialGTRCAT_BINARY() 631 qNumber = ti->qNumber, in computeVectorGTRGAMMAPROT() local 778 qNumber = ti->qNumber, in computeVectorGTRGAMMA() local 964 assert(0 <= (trav->qNumber - mxtips) && (trav->qNumber - mxtips) < mxtips); in evaluatePartialGTRGAMMAPROT() 1045 assert(0 <= (trav->qNumber - mxtips) && (trav->qNumber - mxtips) < mxtips); in evaluatePartialGTRGAMMA() 1087 qNumber = ti->qNumber; in computeVectorGTRCAT() local 1197 assert(0 <= (trav->qNumber - mxtips) && (trav->qNumber - mxtips) < mxtips); in evaluatePartialGTRCAT() [all …]
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H A D | fastDNAparsimony.c | 319 qNumber = (size_t)ti[index + 1], in newviewParsimonyIterativeFast() local 533 qNumber = (size_t)tr->ti[2]; in evaluateParsimonyIterativeFast() local 545 sum = tr->parsimonyScore[pNumber] + tr->parsimonyScore[qNumber]; in evaluateParsimonyIterativeFast() 565 … left[k] = &(pr->partitionData[model]->parsVect[(width * 2 * qNumber) + width * k]); in evaluateParsimonyIterativeFast() 711 qNumber = (size_t)ti[index + 1], in newviewParsimonyIterativeFast() local 905 qNumber = (size_t)tr->ti[2]; in evaluateParsimonyIterativeFast() local 917 sum = tr->parsimonyScore[pNumber] + tr->parsimonyScore[qNumber]; in evaluateParsimonyIterativeFast() 1186 qNumber = tr->constraintVector[q->number], in testInsertParsimony() local 1197 if(qNumber == -9) in testInsertParsimony() 1198 qNumber = checkerPars(tr, q); in testInsertParsimony() [all …]
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H A D | parsimony.c | 456 qNumber = (size_t)ti[index + 1], in newviewParsimonyIterativeFast() local 480 … left[k] = &(pr->partitionData[model]->parsVect[(width * 2 * qNumber) + width * k]); in newviewParsimonyIterativeFast() 524 … left[k] = &(pr->partitionData[model]->parsVect[(width * 4 * qNumber) + width * k]); in newviewParsimonyIterativeFast() 580 … left[k] = &(pr->partitionData[model]->parsVect[(width * 20 * qNumber) + width * k]); in newviewParsimonyIterativeFast() 628 … left[k] = &(pr->partitionData[model]->parsVect[(width * states * qNumber) + width * k]); in newviewParsimonyIterativeFast() 677 qNumber = (size_t)tr->ti[2]; in evaluateParsimonyIterativeFast() local 689 sum = tr->parsimonyScore[pNumber] + tr->parsimonyScore[qNumber]; in evaluateParsimonyIterativeFast() 709 … left[k] = &(pr->partitionData[model]->parsVect[(width * 2 * qNumber) + width * k]); in evaluateParsimonyIterativeFast() 736 … left[k] = &(pr->partitionData[model]->parsVect[(width * 4 * qNumber) + width * k]); in evaluateParsimonyIterativeFast() 765 … left[k] = &(pr->partitionData[model]->parsVect[(width * 20 * qNumber) + width * k]); in evaluateParsimonyIterativeFast() [all …]
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H A D | evaluateGenericSpecial.c | 1206 qNumber = tr->td[0].ti[0].qNumber, in pllEvaluateIterative() local 1223 q_slot = qNumber - tr->mxtips - 1; in pllEvaluateIterative() 1336 if(isTip(pNumber, tr->mxtips) || isTip(qNumber, tr->mxtips)) in pllEvaluateIterative() 1340 if(isTip(qNumber, tr->mxtips)) in pllEvaluateIterative() 1350 tip = pr->partitionData[model]->yVector[qNumber]; in pllEvaluateIterative() 1392 … ex2_asc = &pr->partitionData[model]->ascExpVector[(qNumber - tr->mxtips - 1) * ascWidth]; in pllEvaluateIterative() 1399 …x2_gapColumn = &(pr->partitionData[model]->gapColumn[(qNumber - tr->mxtips - 1) * states * rateH… in pllEvaluateIterative() 1424 …x2_gap = &(pr->partitionData[model]->gapVector[qNumber * pr->partitionData[model]->gapVectorLength… in pllEvaluateIterative() 1426 …x2_gapColumn = &pr->partitionData[model]->gapColumn[(qNumber - tr->mxtips - 1) * states * rateHe… in pllEvaluateIterative() 1448 … ex2_asc = &pr->partitionData[model]->ascExpVector[(qNumber - tr->mxtips - 1) * ascWidth]; in pllEvaluateIterative() [all …]
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H A D | makenewzGenericSpecial.c | 107 qNumber; in getVects() local 112 qNumber = tr->td[0].ti[0].qNumber; in getVects() 124 q_slot = qNumber - tr->mxtips - 1; in getVects() 141 if(isTip(pNumber, tr->mxtips) || isTip(qNumber, tr->mxtips)) in getVects() 143 if(!( isTip(pNumber, tr->mxtips) && isTip(qNumber, tr->mxtips)) ) in getVects() 146 if(isTip(qNumber, tr->mxtips)) in getVects() 148 *tipX1 = pr->partitionData[model]->yVector[qNumber]; in getVects() 195 *tipX2 = pr->partitionData[model]->yVector[qNumber]; in getVects() 1119 int pNumber = tr->td[0].ti[0].pNumber, qNumber = in makenewzIterative() local 1120 tr->td[0].ti[0].qNumber, i, *ex1_asc = in makenewzIterative() [all …]
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H A D | pll.h | 412 int qNumber; /**< should exist in some nodeptr q->number */ member
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H A D | newviewGenericSpecial.c | 2349 ti[*counter].qNumber = q->number; in computeTraversalInfo() 2412 ti[*counter].qNumber = q->number; in computeTraversalInfo() 2498 ti[*counter].qNumber = q->number; in computeTraversalInfo() 2613 q_slot = tInfo->qNumber - tr->mxtips - 1; in pllNewviewIterative() 2726 …x1_gap = &(pr->partitionData[model]->gapVector[tInfo->qNumber * pr->partitionData[model]->gapVecto… in pllNewviewIterative() 2806 tipX1 = pr->partitionData[model]->yVector[tInfo->qNumber]; in pllNewviewIterative() 2846 tipX1 = pr->partitionData[model]->yVector[tInfo->qNumber]; in pllNewviewIterative() 2906 …x1_gapColumn = &pr->partitionData[model]->gapColumn[(tInfo->qNumber - tr->mxtips - 1) * states *… in pllNewviewIterative() 2925 …x1_ascColumn = &pr->partitionData[model]->ascVector[(tInfo->qNumber - tr->mxtips - 1) * pr->partit… in pllNewviewIterative() 2929 … ex1_asc = &pr->partitionData[model]->ascExpVector[(tInfo->qNumber - tr->mxtips - 1) * ascWidth]; in pllNewviewIterative() [all …]
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H A D | genericParallelization.c | 287 MPI_Get_address( &(desc[0].qNumber), disp + 2 ); in defineTraversalInfoMPI()
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/dports/science/jmol/jmol-14.32.7/src/javajs/img/ |
H A D | JpgEncoder.java | 142 int qNumber = jpegObj.qtableNumber[comp]; in writeCompressedData() local 168 dctArray3 = DCT.quantizeBlock(dctArray2, dct.divisors[qNumber]); in writeCompressedData()
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