Searched refs:q_ext (Results 1 – 5 of 5) sorted by relevance
| /dports/science/octopus/octopus-10.5/src/hamiltonian/ |
| H A D | pcm.F90 | 1074 SAFE_ALLOCATE(pcm%q_ext(1:pcm%n_tesserae))
1077 pcm%q_ext = M_ZERO
1088 pcm%q_ext = M_ZERO
1234 pcm%q_ext = M_ZERO
1254 pcm%qtot_ext = sum(pcm%q_ext)
1257 pcm%q_ext = pcm%q_ext + pcm%q_ext_in
1265 pcm%q_ext = pcm%q_ext + pcm%q_ext_in
1276 pcm%q_ext_in = pcm%q_ext
1338 pcm%q_ext = pcm%q_ext + pcm%q_kick
1341 pcm%q_ext = pcm%q_kick
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | na_ungapped.c | 272 Int4 q_ext, s_ext; in s_NuclUngappedExtend() local
279 q_ext = q_off + len; in s_NuclUngappedExtend()
281 q = q_start + q_ext; in s_NuclUngappedExtend()
283 len = MIN(q_ext, s_ext) / COMPRESSION_RATIO; in s_NuclUngappedExtend()
307 ungapped_data->s_start = s_ext - (q_ext - ungapped_data->q_start); in s_NuclUngappedExtend()
312 q = q_start + q_ext; in s_NuclUngappedExtend()
314 len = MIN(query->length - q_ext, subject->length - s_ext) / in s_NuclUngappedExtend()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | na_ungapped.c | 275 Int4 q_ext, s_ext; in s_NuclUngappedExtend() local
282 q_ext = q_off + len; in s_NuclUngappedExtend()
284 q = q_start + q_ext; in s_NuclUngappedExtend()
286 len = MIN(q_ext, s_ext) / COMPRESSION_RATIO; in s_NuclUngappedExtend()
310 ungapped_data->s_start = s_ext - (q_ext - ungapped_data->q_start); in s_NuclUngappedExtend()
315 q = q_start + q_ext; in s_NuclUngappedExtend()
317 len = MIN(query->length - q_ext, subject->length - s_ext) / in s_NuclUngappedExtend()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | na_ungapped.c | 275 Int4 q_ext, s_ext; in s_NuclUngappedExtend() local
282 q_ext = q_off + len; in s_NuclUngappedExtend()
284 q = q_start + q_ext; in s_NuclUngappedExtend()
286 len = MIN(q_ext, s_ext) / COMPRESSION_RATIO; in s_NuclUngappedExtend()
310 ungapped_data->s_start = s_ext - (q_ext - ungapped_data->q_start); in s_NuclUngappedExtend()
315 q = q_start + q_ext; in s_NuclUngappedExtend()
317 len = MIN(query->length - q_ext, subject->length - s_ext) / in s_NuclUngappedExtend()
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| /dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/ |
| H A D | unstructured_domains.c | 2205 FLT_OR_DBL q_ext, q_hp, q_int, q_mb, q; in default_exp_prod_rule() local
2249 q_ext = exp_energies_ext[idx[i + 1] - j]; in default_exp_prod_rule()
2254 q_ext = 0; in default_exp_prod_rule()
2265 q_ext += q; in default_exp_prod_rule()
2267 q_ext += q * exp_energies_ext[idx[u + 1] - j]; in default_exp_prod_rule()
2308 exp_energies_ext[idx[i] - j] = q_ext; in default_exp_prod_rule()
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