Searched refs:queryAlign (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/mothur/mothur-1.46.1/source/chimera/ |
| H A D | maligner.cpp | 507 float Maligner::computePercentID(string queryAlign, string chimera) { in computePercentID() argument
510 if (queryAlign.length() != chimera.length()) { in computePercentID()
512 m->mothurOut(toString(queryAlign.length())+ "\n"); in computePercentID()
521 for (int i = 0; i < queryAlign.length(); i++) { in computePercentID()
522 …if (((queryAlign[i] != 'G') && (queryAlign[i] != 'T') && (queryAlign[i] != 'A') && (queryAlign[i] … in computePercentID()
527 …if ((queryAlign[i] == 'G') || (queryAlign[i] == 'T') || (queryAlign[i] == 'A') || (queryAlign[i] =… in computePercentID()
536 if (queryAlign[i] == chimera[i]) { in computePercentID()
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| H A D | slayer.cpp | 379 float Slayer::computePercentID(string queryAlign, string chimera, int left, int right) { in computePercentID() argument
386 …if (((queryAlign[i] != 'G') && (queryAlign[i] != 'T') && (queryAlign[i] != 'A') && (queryAlign[i] … in computePercentID()
391 …if ((queryAlign[i] == 'G') || (queryAlign[i] == 'T') || (queryAlign[i] == 'A') || (queryAlign[i] =… in computePercentID()
399 if (queryAlign[i] == chimera[i]) { in computePercentID()
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| /dports/biology/mothur/mothur-1.46.1/source/ |
| H A D | refchimeratest.cpp | 119 vector<string> queryAlign; queryAlign.resize(numRefSeqs); in analyzeUnalignedQuery() local
136 …double diffs = alignQueryToReferences(querySeq, referenceSeqs[i], queryAlign[i], refAlign[i], leng… in analyzeUnalignedQuery()
155 …getUnalignedDiffs(queryAlign[i], refAlign[i], leftDiffs[i], leftMaps[i], rightDiffs[i], rightMaps[… in analyzeUnalignedQuery()
246 bestQueryAlignment = queryAlign[bestRefIndex]; in analyzeUnalignedQuery()
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