/dports/science/liggghts/LIGGGHTS-PUBLIC-3.8.0-26-g6e873439/doc/Eqs/ |
H A D | min_energy.tex | 6 E(r_1,r_2, \ldots ,r_N) & = & \sum_{i,j} E_{\it pair}(r_i,r_j) + 7 \sum_{ij} E_{\it bond}(r_i,r_j) + 8 \sum_{ijk} E_{\it angle}(r_i,r_j,r_k) + \\ 9 && \sum_{ijkl} E_{\it dihedral}(r_i,r_j,r_k,r_l) + 10 \sum_{ijkl} E_{\it improper}(r_i,r_j,r_k,r_l) +
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H A D | gran_model_hooke_hysteresis_1.tex | 6 \delta^*_{max} = \frac{\hat k_2}{\hat k_2 - k_1} \phi_f \frac{2 r_i r_j}{r_i + r_j}
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H A D | pair_yukawa_colloid.tex | 6 E = \frac{A}{\kappa} e^{- \kappa (r - (r_i + r_j))} \qquad r < r_c
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/dports/science/votca/votca-2021.2-18560-gfbe18d971/csg/src/libcsg/ |
H A D | openbox.cc | 25 const Eigen::Vector3d &r_i, const Eigen::Vector3d &r_j) const { in BCShortestConnection() 26 return r_j - r_i; in BCShortestConnection()
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H A D | orthorhombicbox.cc | 25 const Eigen::Vector3d &r_i, const Eigen::Vector3d &r_j) const { 27 const Eigen::Array3d r_ij = r_j - r_i;
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H A D | triclinicbox.cc | 35 const Eigen::Vector3d &r_i, const Eigen::Vector3d &r_j) const { in BCShortestConnection() 36 Eigen::Vector3d r_tp = r_j - r_i; in BCShortestConnection()
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/dports/science/votca/votca-2021.2-18560-gfbe18d971/csg/csg-da5c1dc/src/libcsg/ |
H A D | openbox.cc | 25 const Eigen::Vector3d &r_i, const Eigen::Vector3d &r_j) const { in BCShortestConnection() 26 return r_j - r_i; in BCShortestConnection()
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H A D | orthorhombicbox.cc | 25 const Eigen::Vector3d &r_i, const Eigen::Vector3d &r_j) const { in BCShortestConnection() 27 const Eigen::Array3d r_ij = r_j - r_i; in BCShortestConnection()
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H A D | triclinicbox.cc | 35 const Eigen::Vector3d &r_i, const Eigen::Vector3d &r_j) const { in BCShortestConnection() 36 Eigen::Vector3d r_tp = r_j - r_i; in BCShortestConnection()
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/dports/science/py-ase/ase-3.22.0/ase/calculators/ |
H A D | tip4p.py | 158 r_j = pos[w + 1] # H1 pos 160 n = (r_j + r_k) / 2 - r_i 166 xatomspos[x + 1] = r_j 187 r_j = pos[w + 1] # H1 pos 189 r_ij = r_j - r_i 190 r_jk = r_k - r_j
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/dports/math/py-libpoly/libpoly-0.1.11/examples/cad/ |
H A D | cad.py | 66 r_i, r_j = itertools.tee(roots) 67 next(r_j) 68 for r1, r2 in zip(r_i, r_j):
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/dports/math/libpoly/libpoly-0.1.11/examples/cad/ |
H A D | cad.py | 66 r_i, r_j = itertools.tee(roots) 67 next(r_j) 68 for r1, r2 in zip(r_i, r_j):
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/bs_tools/ |
H A D | casbar_util.h | 34 long double r_j; in computeGenotypePriors() local 51 r_j = (isTransition((Dna)i, (Dna)j)? (double)(12.0/6.0):(double)(3.0/6.0)); in computeGenotypePriors() 59 methOptions.genPriors[i<<4| j<<2| k] = options.pHetSnp*r_j*(3.0/16.0); in computeGenotypePriors() 61 … methOptions.genPriors[i<<4| j<<2| k] = options.pHomoSnp*r_j*(3.0/16.0); // + pError ? in computeGenotypePriors()
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/dports/science/py-gpaw/gpaw-21.6.0/gpaw/ |
H A D | hyperfine.py | 230 r_j = np.linspace(0, r4, n) 237 d_j = delta(r_j, rT) - (d0 + d1 * r_j) 239 head_j = d_j * np.polyval(a_i, r_j) 240 head_j[1:] *= r_j[1:]**-beta 241 n0 += simps(head_j, r_j)
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/dports/math/cppad/CppAD-20210000.8/include/cppad/core/chkpoint_one/ |
H A D | for_sparse_jac.hpp | 121 const std::set<size_t>& r_j( r[j] ); in for_sparse_jac() local 122 for(itr_j = r_j.begin(); itr_j != r_j.end(); itr_j++) in for_sparse_jac()
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H A D | rev_sparse_hes.hpp | 192 const std::set<size_t>& r_j( r[j] ); in rev_sparse_hes() local 193 for(itr_j = r_j.begin(); itr_j != r_j.end(); itr_j++) in rev_sparse_hes()
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/dports/math/openturns/openturns-1.18/python/src/ |
H A D | EmpiricalBernsteinCopula_doc.i.in | 19 C(\vect{u}) = \dfrac{1}{N}\sum_{i=1}^N\prod_{j=1}^d I_{r_j^i,s_j^i}(u_j) 21 for :math:`\vect{u}\in[0,1]^d`, where :math:`r_j^i=\lceil binNumber U_j^i \rceil`, :math:`binNumber…
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/dports/astro/nightfall/nightfall-1.92/ |
H A D | LightDivide.c | 1169 double r_j=0; in DivideDisk() local 1426 r_j = (r_i_new+r_i_old)/2.0; in DivideDisk() 1430 ring_height = ( (diskAdd + diskProp * pow(r_j, diskExp)) / 2.0); in DivideDisk() 1463 t_temp = t_c * pow(r_j, -0.75); in DivideDisk() 1491 SurfPtr->lambda = (float) r_j * cos_phi; in DivideDisk() 1492 SurfPtr->mu = (float) r_j * sin_phi; in DivideDisk() 1554 if ( (hs_dist <= hs_ext) && (r_j >= (Rout - hs_depth)) ) in DivideDisk() 1816 t_temp = t_c * pow(r_j, -0.75); in DivideDisk() 1837 SurfPtr->lambda = (float) r_j * cos_phi; in DivideDisk() 1838 SurfPtr->mu = (float) r_j * sin_phi; in DivideDisk() [all …]
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/dports/biology/infernal/infernal-1.1.3/easel/ |
H A D | esl_msaweight.md | 25 column $j$; and let $r_j$ be the number of different residues in 30 w_i = \frac{N}{L} \sum_{j=1}^{L} \frac{1}{r_j c_{j}(x_{ij})} 51 eventually every residue will be observed in every column ($r_j 64 \frac{1}{r_j c_{j}(a)} & \mbox{if } a \mbox{ is a residue} \\
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/dports/biology/hmmer/hmmer-3.3/easel/ |
H A D | esl_msaweight.md | 25 column $j$; and let $r_j$ be the number of different residues in 30 w_i = \frac{N}{L} \sum_{j=1}^{L} \frac{1}{r_j c_{j}(x_{ij})} 51 eventually every residue will be observed in every column ($r_j 64 \frac{1}{r_j c_{j}(a)} & \mbox{if } a \mbox{ is a residue} \\
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/dports/math/R/R-4.1.2/m4/ |
H A D | clibs.m4 | 170 for r_j in `echo $r_arg | sed -e 's/-YP,/-L/;s/:/ -L/g'`; do 171 _AC_LIST_MEMBER_IF($r_j, $r_cv_c_libs, , 172 [r_arg="$r_arg $r_j" 173 r_cv_c_libs="$r_cv_c_libs $r_j"])
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/dports/math/libRmath/R-4.1.1/m4/ |
H A D | clibs.m4 | 170 for r_j in `echo $r_arg | sed -e 's/-YP,/-L/;s/:/ -L/g'`; do 171 _AC_LIST_MEMBER_IF($r_j, $r_cv_c_libs, , 172 [r_arg="$r_arg $r_j" 173 r_cv_c_libs="$r_cv_c_libs $r_j"])
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/dports/math/SCIP/scip-7.0.3/src/cppad/core/ |
H A D | checkpoint.hpp | 873 const std::set<size_t>& r_j( r[j] ); in for_sparse_jac() local 874 for(itr_j = r_j.begin(); itr_j != r_j.end(); itr_j++) in for_sparse_jac() 1061 const std::set<size_t>& r_j( r[j] ); in rev_sparse_hes() local 1062 for(itr_j = r_j.begin(); itr_j != r_j.end(); itr_j++) in rev_sparse_hes() 1712 const std::set<size_t>& r_j( r[j] ); 1713 for(itr_j = r_j.begin(); itr_j != r_j.end(); itr_j++) 1900 const std::set<size_t>& r_j( r[j] ); 1901 for(itr_j = r_j.begin(); itr_j != r_j.end(); itr_j++)
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/dports/science/votca/votca-2021.2-18560-gfbe18d971/csg/csg-da5c1dc/include/votca/csg/ |
H A D | openbox.h | 31 const Eigen::Vector3d &r_j) const final;
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/dports/science/votca/votca-2021.2-18560-gfbe18d971/csg/include/votca/csg/ |
H A D | openbox.h | 31 const Eigen::Vector3d &r_j) const final;
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