Searched refs:readAnnotationFile (Results 1 – 6 of 6) sorted by relevance
| /dports/biology/jalview/jalview/test/jalview/io/ |
| H A D | AnnotationFileIOTest.java | 123 new AnnotationFile().readAnnotationFile(al, cs, af, in testAnnotationFileIO()
152 new AnnotationFile().readAnnotationFile(al_new, anfileout, in testAnnotationFileIO()
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| H A D | StockholmFileTest.java | 690 aaf.readAnnotationFile(al, annFile, DataSourceType.PASTE); in roundTripSSForRNA()
754 aaf.readAnnotationFile(newAl, annFileRnaSSAlphaChars, in stockholmFileRnaSSAlphaChars()
769 aaf.readAnnotationFile(newAl, wrongAnnFileRnaSSAlphaChars, in stockholmFileRnaSSAlphaChars()
814 afWithSpaces.readAnnotationFile(alWithSpaces, in stockholmFileRnaSSSpaceChars()
841 afWithoutSpaces.readAnnotationFile(alWithoutSpaces, in stockholmFileRnaSSSpaceChars()
862 wrongAfWithoutSpaces.readAnnotationFile(wrongAlWithoutSpaces, in stockholmFileRnaSSSpaceChars()
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| /dports/biology/jalview/jalview/test/jalview/ws/jabaws/ |
| H A D | DisorderAnnotExportImport.java | 176 new AnnotationFile().readAnnotationFile(al_new, anfileout, in checkAnnotationFileIO()
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| H A D | RNAStructExportImport.java | 243 new AnnotationFile().readAnnotationFile(al_new, anfileout, in verifyAnnotationFileIO()
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| /dports/biology/jalview/jalview/src/jalview/io/ |
| H A D | AnnotationFile.java | 662 boolean rslt = readAnnotationFile(viewport.getAlignment(), hidden, file, in annotateAlignmentView()
673 public boolean readAnnotationFile(AlignmentI al, String file, in readAnnotationFile() method in AnnotationFile
676 return readAnnotationFile(al, null, file, sourceType); in readAnnotationFile()
679 public boolean readAnnotationFile(AlignmentI al, HiddenColumns hidden, in readAnnotationFile() method in AnnotationFile
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| /dports/biology/jalview/jalview/src/jalview/ws/jws1/ |
| H A D | SeqSearchWSThread.java | 210 new jalview.io.AnnotationFile().readAnnotationFile(al, inFile, in getAlignment()
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