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Searched refs:sampleProb (Results 1 – 7 of 7) sorted by relevance

/dports/biology/mrbayes/MrBayes-3.2.7/src/
H A Dbayes.c834 …defaultModel.sampleProb = 1.0; /* extant taxon sampling fraction … in InitializeMrBayes()
H A Dbayes.h1107 MrBFlt sampleProb; /* extant taxon sampling fraction (rho) */ member
H A Dbest.c809 sF = mp->sampleProb; in LnJointGeneTreeSpeciesTreePr()
H A Dmodel.c7876 modelParams[i].sampleProb = tempD; in DoPrsetParm()
7878 … MrBayesPrint ("%s Setting Sampleprob to %1.8lf\n", spacer, modelParams[i].sampleProb); in DoPrsetParm()
7880 …t ("%s Setting Sampleprob to %1.8lf for partition %d\n", spacer, modelParams[i].sampleProb, i+1); in DoPrsetParm()
14140 … if (AreDoublesEqual (modelParams[part1].sampleProb, modelParams[part2].sampleProb, 0.00001) == NO) in IsModelSame()
14292 … if (AreDoublesEqual (modelParams[part1].sampleProb, modelParams[part2].sampleProb, 0.00001) == NO) in IsModelSame()
H A Dmcmc.c7372 sF = mp->sampleProb; in LogClockTreePriorRatio()
7391 sF = mp->sampleProb; in LogClockTreePriorRatio()
8037 sF = mp->sampleProb; in LogPrior()
8054 sF = mp->sampleProb; in LogPrior()
H A Dproposal.c1622 sF = mp->sampleProb; in Move_Extinction()
1734 sF = mp->sampleProb; in Move_Fossilization()
15102 sF = mp->sampleProb; in Move_Speciation()
15212 sF = mp->sampleProb; in Move_Speciation_M()
H A Dcommand.c11584 … MrBayesPrint (" Sampleprob <number> %1.8lf\n", mp->sampleProb); in GetUserHelp()