Searched refs:sampleProb (Results 1 – 7 of 7) sorted by relevance
/dports/biology/mrbayes/MrBayes-3.2.7/src/ |
H A D | bayes.c | 834 …defaultModel.sampleProb = 1.0; /* extant taxon sampling fraction … in InitializeMrBayes()
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H A D | bayes.h | 1107 MrBFlt sampleProb; /* extant taxon sampling fraction (rho) */ member
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H A D | best.c | 809 sF = mp->sampleProb; in LnJointGeneTreeSpeciesTreePr()
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H A D | model.c | 7876 modelParams[i].sampleProb = tempD; in DoPrsetParm() 7878 … MrBayesPrint ("%s Setting Sampleprob to %1.8lf\n", spacer, modelParams[i].sampleProb); in DoPrsetParm() 7880 …t ("%s Setting Sampleprob to %1.8lf for partition %d\n", spacer, modelParams[i].sampleProb, i+1); in DoPrsetParm() 14140 … if (AreDoublesEqual (modelParams[part1].sampleProb, modelParams[part2].sampleProb, 0.00001) == NO) in IsModelSame() 14292 … if (AreDoublesEqual (modelParams[part1].sampleProb, modelParams[part2].sampleProb, 0.00001) == NO) in IsModelSame()
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H A D | mcmc.c | 7372 sF = mp->sampleProb; in LogClockTreePriorRatio() 7391 sF = mp->sampleProb; in LogClockTreePriorRatio() 8037 sF = mp->sampleProb; in LogPrior() 8054 sF = mp->sampleProb; in LogPrior()
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H A D | proposal.c | 1622 sF = mp->sampleProb; in Move_Extinction() 1734 sF = mp->sampleProb; in Move_Fossilization() 15102 sF = mp->sampleProb; in Move_Speciation() 15212 sF = mp->sampleProb; in Move_Speciation_M()
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H A D | command.c | 11584 … MrBayesPrint (" Sampleprob <number> %1.8lf\n", mp->sampleProb); in GetUserHelp()
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