Searched refs:sentinelOcc (Results 1 – 8 of 8) sorted by relevance
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/index/ |
| H A D | index_wotd.h | 209 TSize sentinelOcc; variable
235 sentinelOcc(other.sentinelOcc), in Index()
246 sentinelOcc(other.sentinelOcc), in Index()
253 sentinelOcc(0), in Index()
260 sentinelOcc(0), in Index()
1201 index.sentinelOcc = 0;
1254 index.sentinelOcc = 0;
1295 index.sentinelOcc =
1687 if (index.sentinelOcc != 0)
1747 if (index.sentinelOcc != 0)
[all …]
|
| H A D | index_dfi.h | 376 index.sentinelOcc = 0; in _sortFirstWotdBucket()
428 index.sentinelOcc = 0; in _sortWotdBucket()
473 if (textLength == getSeqOffset(lPos)) ++index.sentinelOcc; in _sortWotdBucket()
480 if (index.sentinelOcc != 0) in _sortWotdBucket()
481 … requiredSize = (index.sentinelOcc > 1)? 2: 1; // insert *one* $-edge for all $_i suffices in _sortWotdBucket()
483 … requiredSize = index.sentinelOcc; // insert each $_i suffix one-by-one in _sortWotdBucket()
485 requiredSize += _wotdCummulativeSum(bound, occ, left + index.sentinelOcc); in _sortWotdBucket()
562 if (index.sentinelOcc != 0) in _storeWotdChildren()
567 if (index.sentinelOcc > 1 && index.interSentinelNodes) // occurs on multiseqs in _storeWotdChildren()
570 *itDir = (index.sentinelBound - index.sentinelOcc) | orMask; ++itDir; in _storeWotdChildren()
[all …]
|
| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/index/ |
| H A D | index_wotd.h | 209 TSize sentinelOcc; variable
235 sentinelOcc(other.sentinelOcc), in Index()
246 sentinelOcc(other.sentinelOcc), in Index()
253 sentinelOcc(0), in Index()
260 sentinelOcc(0), in Index()
1201 index.sentinelOcc = 0;
1254 index.sentinelOcc = 0;
1295 index.sentinelOcc =
1687 if (index.sentinelOcc != 0)
1747 if (index.sentinelOcc != 0)
[all …]
|
| H A D | index_dfi.h | 376 index.sentinelOcc = 0; in _sortFirstWotdBucket()
428 index.sentinelOcc = 0; in _sortWotdBucket()
473 if (textLength == getSeqOffset(lPos)) ++index.sentinelOcc; in _sortWotdBucket()
480 if (index.sentinelOcc != 0) in _sortWotdBucket()
481 … requiredSize = (index.sentinelOcc > 1)? 2: 1; // insert *one* $-edge for all $_i suffices in _sortWotdBucket()
483 … requiredSize = index.sentinelOcc; // insert each $_i suffix one-by-one in _sortWotdBucket()
485 requiredSize += _wotdCummulativeSum(bound, occ, left + index.sentinelOcc); in _sortWotdBucket()
562 if (index.sentinelOcc != 0) in _storeWotdChildren()
567 if (index.sentinelOcc > 1 && index.interSentinelNodes) // occurs on multiseqs in _storeWotdChildren()
570 *itDir = (index.sentinelBound - index.sentinelOcc) | orMask; ++itDir; in _storeWotdChildren()
[all …]
|
| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/index/ |
| H A D | index_wotd.h | 209 TSize sentinelOcc; variable
223 sentinelOcc(other.sentinelOcc), in Index()
234 sentinelOcc(other.sentinelOcc), in Index()
241 sentinelOcc(0), in Index()
248 sentinelOcc(0), in Index()
1189 index.sentinelOcc = 0;
1242 index.sentinelOcc = 0;
1283 index.sentinelOcc =
1675 if (index.sentinelOcc != 0)
1735 if (index.sentinelOcc != 0)
[all …]
|
| H A D | index_dfi.h | 363 index.sentinelOcc = 0; in _sortFirstWotdBucket()
416 index.sentinelOcc = 0; in _sortWotdBucket()
461 if (textLength == getSeqOffset(lPos)) ++index.sentinelOcc; in _sortWotdBucket()
468 if (index.sentinelOcc != 0) in _sortWotdBucket()
469 … requiredSize = (index.sentinelOcc > 1)? 2: 1; // insert *one* $-edge for all $_i suffices in _sortWotdBucket()
471 … requiredSize = index.sentinelOcc; // insert each $_i suffix one-by-one in _sortWotdBucket()
473 requiredSize += _wotdCummulativeSum(bound, occ, left + index.sentinelOcc); in _sortWotdBucket()
551 if (index.sentinelOcc != 0) in _storeWotdChildren()
556 if (index.sentinelOcc > 1 && index.interSentinelNodes) // occurs on multiseqs in _storeWotdChildren()
559 *itDir = (index.sentinelBound - index.sentinelOcc) | orMask; ++itDir; in _storeWotdChildren()
[all …]
|
| /dports/biology/seqan1/seqan-1.3.1/seqan/index/ |
| H A D | index_wotd.h | 149 TSize sentinelOcc; variable
163 sentinelOcc(other.sentinelOcc), in Index()
174 sentinelOcc(other.sentinelOcc), in Index()
1109 index.sentinelOcc = 0;
1164 index.sentinelOcc = 0;
1205 index.sentinelOcc =
1600 if (index.sentinelOcc != 0)
1661 if (index.sentinelOcc != 0)
1726 if (index.sentinelOcc > 1)
1771 if (index.sentinelOcc > 1)
[all …]
|
| H A D | index_dfi.h | 284 index.sentinelOcc = 0; in _sortFirstWotdBucket()
337 index.sentinelOcc = 0; in _sortWotdBucket()
382 if (textLength == getSeqOffset(lPos)) ++index.sentinelOcc; in _sortWotdBucket()
389 if (index.sentinelOcc != 0) in _sortWotdBucket()
390 requiredSize = (index.sentinelOcc > 1)? 2: 1; // insert *one* $-edge for all $_i suffices in _sortWotdBucket()
392 requiredSize = index.sentinelOcc; // insert each $_i suffix one-by-one in _sortWotdBucket()
394 requiredSize += _wotdCummulativeSum(bound, occ, left + index.sentinelOcc); in _sortWotdBucket()
472 if (index.sentinelOcc != 0) in _storeWotdChildren()
477 if (index.sentinelOcc > 1 && index.interSentinelNodes) // occurs on multiseqs in _storeWotdChildren()
480 *itDir = (index.sentinelBound - index.sentinelOcc) | orMask; ++itDir; in _storeWotdChildren()
[all …]
|