Searched refs:stackEnergy (Results 1 – 4 of 4) sorted by relevance
| /dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/ |
| H A D | snofold.c | 613 int new_c = 0, stackEnergy = INF; /* seems that new_c immer den minimum von cij enthaelt */ in alifill_arrays() local
651 stackEnergy = energy; /* remember stack energy */ in alifill_arrays()
657 new_c = MIN2(new_c, cc1[j - 1] + stackEnergy); in alifill_arrays()
913 int new_c = 0, stackEnergy = INF; /* seems that new_c immer den minimum von cij enthaelt */ in fill_arrays() local
953 stackEnergy = energy; /* remember stack energy */ in fill_arrays()
961 new_c = MIN2(new_c, cc1[j - 1] + stackEnergy); in fill_arrays()
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| H A D | mfe_window.c | 1894 int e, new_c, energy, stackEnergy, dangle_model, noLP, in decompose_pair() local
1930 stackEnergy = vrna_E_stack(fc, i, j); in decompose_pair()
1931 new_c = MIN2(new_c, cc1[j - 1 - (i + 1)] + stackEnergy); in decompose_pair()
1937 e = cc1[j - 1 - (i + 1)] + stackEnergy; in decompose_pair()
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| H A D | cofold.c | 298 int stackEnergy = vrna_E_stack(vc, i, j); in fill_arrays() local
299 new_c = MIN2(new_c, cc1[j - 1] + stackEnergy); in fill_arrays()
300 my_c[ij] = cc1[j - 1] + stackEnergy; in fill_arrays()
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| H A D | mfe.c | 1737 int e, new_c, energy, stackEnergy, ij, dangle_model, noLP, in decompose_pair() local
1775 stackEnergy = vrna_E_stack(fc, i, j); in decompose_pair()
1776 new_c = MIN2(new_c, cc1[j - 1] + stackEnergy); in decompose_pair()
1782 e = cc1[j - 1] + stackEnergy; in decompose_pair()
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