| /dports/biology/infernal/infernal-1.1.3/easel/ |
| H A D | esl_msafile_afa.c | 441 FILE *afafp, *stkfp; in read_test_msas_digital() local
460 if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg); in read_test_msas_digital()
462 if ( esl_msafile_stockholm_Write(stkfp, msa1, eslMSAFILE_STOCKHOLM) != eslOK) esl_fatal(msg); in read_test_msas_digital()
464 fclose(stkfp); in read_test_msas_digital()
490 FILE *afafp, *stkfp; in read_test_msas_text() local
506 if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg); in read_test_msas_text()
510 fclose(stkfp); in read_test_msas_text()
564 FILE *afafp, *stkfp; in main() local
575 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main()
576 write_test_msas(afafp, stkfp); in main()
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| H A D | esl_msafile_psiblast.c | 529 FILE *pbfp, *stkfp; in read_test_msas_digital() local
548 …if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg); in read_test_msas_digital()
550 …if ( esl_msafile_stockholm_Write(stkfp, msa1, eslMSAFILE_STOCKHOLM) != eslOK) esl_fatal(msg); in read_test_msas_digital()
552 fclose(stkfp); in read_test_msas_digital()
578 FILE *pbfp, *stkfp; in read_test_msas_text() local
594 …if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg… in read_test_msas_text()
598 fclose(stkfp); in read_test_msas_text()
652 FILE *pbfp, *stkfp; in main() local
662 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main()
663 write_test_msas(pbfp, stkfp); in main()
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| H A D | esl_msafile_clustal.c | 774 FILE *alnfp, *stkfp; in read_test_msas_digital() local
793 …if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg); in read_test_msas_digital()
795 …if ( esl_msafile_stockholm_Write(stkfp, msa1, eslMSAFILE_STOCKHOLM) != eslOK) esl_fatal(msg); in read_test_msas_digital()
797 fclose(stkfp); in read_test_msas_digital()
823 FILE *alnfp, *stkfp; in read_test_msas_text() local
839 …if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg… in read_test_msas_text()
843 fclose(stkfp); in read_test_msas_text()
897 FILE *alnfp, *stkfp; in main() local
908 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main()
909 write_test_msas(alnfp, stkfp); in main()
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| H A D | esl_msafile_a2m.c | 785 FILE *a2mfp, *stkfp; in read_test_msas_digital() local
804 if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg); in read_test_msas_digital()
806 if ( esl_msafile_stockholm_Write(stkfp, msa1, eslMSAFILE_PFAM) != eslOK) esl_fatal(msg); in read_test_msas_digital()
808 fclose(stkfp); in read_test_msas_digital()
834 FILE *a2mfp, *stkfp; in read_test_msas_text() local
850 if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg); in read_test_msas_text()
854 fclose(stkfp); in read_test_msas_text()
946 FILE *a2mfp, *stkfp; in main() local
959 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main()
960 write_test_msas(a2mfp, stkfp); in main()
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| H A D | esl_msafile_selex.c | 956 FILE *slxfp, *stkfp; in read_test_msas_digital() local
975 …if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg); in read_test_msas_digital()
979 fclose(stkfp); in read_test_msas_digital()
1005 FILE *slxfp, *stkfp; in read_test_msas_text() local
1021 if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg); in read_test_msas_text()
1023 if ( esl_msafile_stockholm_Write(stkfp, msa1, eslMSAFILE_STOCKHOLM) != eslOK) esl_fatal(msg); in read_test_msas_text()
1025 fclose(stkfp); in read_test_msas_text()
1079 FILE *slxfp, *stkfp; in main() local
1089 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main()
1090 write_test_msas(slxfp, stkfp); in main()
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| /dports/biology/hmmer/hmmer-3.3/easel/ |
| H A D | esl_msafile_afa.c | 441 FILE *afafp, *stkfp; in read_test_msas_digital() local
460 if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg); in read_test_msas_digital()
462 if ( esl_msafile_stockholm_Write(stkfp, msa1, eslMSAFILE_STOCKHOLM) != eslOK) esl_fatal(msg); in read_test_msas_digital()
464 fclose(stkfp); in read_test_msas_digital()
490 FILE *afafp, *stkfp; in read_test_msas_text() local
506 if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg); in read_test_msas_text()
510 fclose(stkfp); in read_test_msas_text()
564 FILE *afafp, *stkfp; in main() local
575 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main()
576 write_test_msas(afafp, stkfp); in main()
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| H A D | esl_msafile_psiblast.c | 529 FILE *pbfp, *stkfp; in read_test_msas_digital() local
548 …if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg); in read_test_msas_digital()
550 …if ( esl_msafile_stockholm_Write(stkfp, msa1, eslMSAFILE_STOCKHOLM) != eslOK) esl_fatal(msg); in read_test_msas_digital()
552 fclose(stkfp); in read_test_msas_digital()
578 FILE *pbfp, *stkfp; in read_test_msas_text() local
594 …if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg… in read_test_msas_text()
598 fclose(stkfp); in read_test_msas_text()
652 FILE *pbfp, *stkfp; in main() local
662 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main()
663 write_test_msas(pbfp, stkfp); in main()
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| H A D | esl_msafile_clustal.c | 774 FILE *alnfp, *stkfp; in read_test_msas_digital() local
793 …if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg); in read_test_msas_digital()
795 …if ( esl_msafile_stockholm_Write(stkfp, msa1, eslMSAFILE_STOCKHOLM) != eslOK) esl_fatal(msg); in read_test_msas_digital()
797 fclose(stkfp); in read_test_msas_digital()
823 FILE *alnfp, *stkfp; in read_test_msas_text() local
839 …if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg… in read_test_msas_text()
843 fclose(stkfp); in read_test_msas_text()
897 FILE *alnfp, *stkfp; in main() local
908 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main()
909 write_test_msas(alnfp, stkfp); in main()
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| H A D | esl_msafile_a2m.c | 785 FILE *a2mfp, *stkfp; in read_test_msas_digital() local
804 if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg); in read_test_msas_digital()
806 if ( esl_msafile_stockholm_Write(stkfp, msa1, eslMSAFILE_PFAM) != eslOK) esl_fatal(msg); in read_test_msas_digital()
808 fclose(stkfp); in read_test_msas_digital()
834 FILE *a2mfp, *stkfp; in read_test_msas_text() local
850 if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg); in read_test_msas_text()
854 fclose(stkfp); in read_test_msas_text()
946 FILE *a2mfp, *stkfp; in main() local
959 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main()
960 write_test_msas(a2mfp, stkfp); in main()
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| H A D | esl_msafile_selex.c | 956 FILE *slxfp, *stkfp; in read_test_msas_digital() local
975 …if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg); in read_test_msas_digital()
979 fclose(stkfp); in read_test_msas_digital()
1005 FILE *slxfp, *stkfp; in read_test_msas_text() local
1021 if ( esl_tmpfile_named(stkfile2, &stkfp) != eslOK) esl_fatal(msg); in read_test_msas_text()
1023 if ( esl_msafile_stockholm_Write(stkfp, msa1, eslMSAFILE_STOCKHOLM) != eslOK) esl_fatal(msg); in read_test_msas_text()
1025 fclose(stkfp); in read_test_msas_text()
1079 FILE *slxfp, *stkfp; in main() local
1089 if ( esl_tmpfile_named(stkfile, &stkfp) != eslOK) esl_fatal(msg); in main()
1090 write_test_msas(slxfp, stkfp); in main()
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