/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/ |
H A D | queryinfo_unit_test.cpp | 65 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 67 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 90 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 92 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 114 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 116 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 138 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 140 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 162 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 164 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() [all …]
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H A D | scoreblk_unit_test.cpp | 77 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 79 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 81 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 122 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 124 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 126 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 175 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 177 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 179 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 250 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local [all …]
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H A D | blastoptions_unit_test.cpp | 348 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 351 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 517 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 520 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 608 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 881 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 958 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 1029 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 1097 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 1185 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() [all …]
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H A D | blastextend_unit_test.cpp | 273 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_FIXTURE_TEST_SUITE() local 276 SetupQueryInfo(queries, prog, strand_opt, &m_iclsQueryInfo); in BOOST_FIXTURE_TEST_SUITE() 278 prog, strand_opt, blast_msg); in BOOST_FIXTURE_TEST_SUITE() 360 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 363 SetupQueryInfo(queries, prog, strand_opt, &m_iclsQueryInfo); in BOOST_AUTO_TEST_CASE() 365 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 473 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 476 SetupQueryInfo(queries, prog, strand_opt, &m_iclsQueryInfo); in BOOST_AUTO_TEST_CASE() 478 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
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H A D | traceback_unit_test.cpp | 225 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 228 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 360 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 363 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 493 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 496 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 620 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 623 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 863 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 866 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() [all …]
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H A D | rmblast_traceback_unit_test.cpp | 216 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_FIXTURE_TEST_SUITE() local 219 prog, strand_opt, &query_info); in BOOST_FIXTURE_TEST_SUITE() 221 query_info, &query_blk, prog, strand_opt, blast_msg); in BOOST_FIXTURE_TEST_SUITE()
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H A D | linkhsp_unit_test.cpp | 254 ENa_strand strand_opt = options.GetStrandOption(); in setupLinkHspInputTblastn() local 256 SetupQueryInfo(query_v, m_ProgramType, strand_opt, &m_QueryInfo); in setupLinkHspInputTblastn() 258 m_ProgramType, strand_opt, blast_msg); in setupLinkHspInputTblastn() 452 ENa_strand strand_opt = options.GetStrandOption(); in setupCutoffScores() local 454 SetupQueryInfo(qv, m_ProgramType, strand_opt, &m_QueryInfo); in setupCutoffScores() 456 m_ProgramType, strand_opt, blast_msg); in setupCutoffScores()
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H A D | blastsetup_unit_test.cpp | 888 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 890 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 892 prog, strand_opt, msgs); in BOOST_AUTO_TEST_CASE() 1336 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 1338 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 1340 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 1375 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 1377 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 1379 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
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H A D | redoalignment_unit_test.cpp | 246 ENa_strand strand_opt = kOpts.GetStrandOption(); in runRedoAlignmentCoreUnitTest() local 249 core_prog, strand_opt,&query_info); in runRedoAlignmentCoreUnitTest() 251 query_info, &query_blk, core_prog, strand_opt, blast_msg); in runRedoAlignmentCoreUnitTest()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/ |
H A D | queryinfo_unit_test.cpp | 65 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 67 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 90 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 92 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 114 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 116 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 138 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 140 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 162 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 164 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() [all …]
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H A D | scoreblk_unit_test.cpp | 77 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 79 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 81 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 122 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 124 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 126 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 175 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 177 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 179 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 250 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local [all …]
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H A D | blastoptions_unit_test.cpp | 348 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 351 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 517 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 520 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 608 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 881 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 958 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 1029 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 1097 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 1185 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() [all …]
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H A D | blastextend_unit_test.cpp | 273 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_FIXTURE_TEST_SUITE() local 276 SetupQueryInfo(queries, prog, strand_opt, &m_iclsQueryInfo); in BOOST_FIXTURE_TEST_SUITE() 278 prog, strand_opt, blast_msg); in BOOST_FIXTURE_TEST_SUITE() 360 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 363 SetupQueryInfo(queries, prog, strand_opt, &m_iclsQueryInfo); in BOOST_AUTO_TEST_CASE() 365 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 473 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 476 SetupQueryInfo(queries, prog, strand_opt, &m_iclsQueryInfo); in BOOST_AUTO_TEST_CASE() 478 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
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H A D | traceback_unit_test.cpp | 225 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 228 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 360 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 363 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 493 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 496 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 620 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 623 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 863 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 866 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() [all …]
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H A D | rmblast_traceback_unit_test.cpp | 216 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_FIXTURE_TEST_SUITE() local 219 prog, strand_opt, &query_info); in BOOST_FIXTURE_TEST_SUITE() 221 query_info, &query_blk, prog, strand_opt, blast_msg); in BOOST_FIXTURE_TEST_SUITE()
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H A D | linkhsp_unit_test.cpp | 254 ENa_strand strand_opt = options.GetStrandOption(); in setupLinkHspInputTblastn() local 256 SetupQueryInfo(query_v, m_ProgramType, strand_opt, &m_QueryInfo); in setupLinkHspInputTblastn() 258 m_ProgramType, strand_opt, blast_msg); in setupLinkHspInputTblastn() 452 ENa_strand strand_opt = options.GetStrandOption(); in setupCutoffScores() local 454 SetupQueryInfo(qv, m_ProgramType, strand_opt, &m_QueryInfo); in setupCutoffScores() 456 m_ProgramType, strand_opt, blast_msg); in setupCutoffScores()
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H A D | blastsetup_unit_test.cpp | 888 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 890 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 892 prog, strand_opt, msgs); in BOOST_AUTO_TEST_CASE() 1336 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 1338 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 1340 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE() 1375 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local 1377 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE() 1379 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/ |
H A D | blast_objmgr_priv.hpp | 211 objects::ENa_strand strand_opt, 230 objects::ENa_strand strand_opt, 251 objects::ENa_strand strand_opt,
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H A D | blast_setup_cxx.cpp | 99 objects::ENa_strand strand_opt) in s_BlastSetup_GetStrand() argument 107 ENa_strand retval = (strand_opt == eNa_strand_both || in s_BlastSetup_GetStrand() 108 strand_opt == eNa_strand_unknown) in s_BlastSetup_GetStrand() 109 ? seqloc_strand : strand_opt; in s_BlastSetup_GetStrand() 119 objects::ENa_strand strand_opt) in BlastSetup_GetStrand() argument 122 strand_opt); in BlastSetup_GetStrand() 129 ENa_strand strand_opt, in s_AdjustFirstContext() argument 143 strand_opt); in s_AdjustFirstContext() 155 objects::ENa_strand strand_opt, in SetupQueryInfo_OMF() argument 489 objects::ENa_strand strand_opt, in SetupQueries_OMF() argument [all …]
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H A D | blast_objmgr_tools.cpp | 394 objects::ENa_strand strand_opt, in SetupQueryInfo() argument 397 SetupQueryInfo_OMF(CBlastQuerySourceOM(queries, prog), prog, strand_opt, qinfo); in SetupQueryInfo() 405 objects::ENa_strand strand_opt, in SetupQueries() argument 410 strand_opt, messages); in SetupQueries()
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H A D | blast_setup.hpp | 269 objects::ENa_strand strand_opt, 288 objects::ENa_strand strand_opt,
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/ |
H A D | blast_objmgr_priv.hpp | 211 objects::ENa_strand strand_opt, 230 objects::ENa_strand strand_opt, 251 objects::ENa_strand strand_opt,
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H A D | blast_setup_cxx.cpp | 99 objects::ENa_strand strand_opt) in s_BlastSetup_GetStrand() argument 107 ENa_strand retval = (strand_opt == eNa_strand_both || in s_BlastSetup_GetStrand() 108 strand_opt == eNa_strand_unknown) in s_BlastSetup_GetStrand() 109 ? seqloc_strand : strand_opt; in s_BlastSetup_GetStrand() 119 objects::ENa_strand strand_opt) in BlastSetup_GetStrand() argument 122 strand_opt); in BlastSetup_GetStrand() 129 ENa_strand strand_opt, in s_AdjustFirstContext() argument 143 strand_opt); in s_AdjustFirstContext() 155 objects::ENa_strand strand_opt, in SetupQueryInfo_OMF() argument 489 objects::ENa_strand strand_opt, in SetupQueries_OMF() argument [all …]
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H A D | blast_objmgr_tools.cpp | 394 objects::ENa_strand strand_opt, in SetupQueryInfo() argument 397 SetupQueryInfo_OMF(CBlastQuerySourceOM(queries, prog), prog, strand_opt, qinfo); in SetupQueryInfo() 405 objects::ENa_strand strand_opt, in SetupQueries() argument 410 strand_opt, messages); in SetupQueries()
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H A D | blast_setup.hpp | 269 objects::ENa_strand strand_opt, 288 objects::ENa_strand strand_opt,
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