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Searched refs:strand_opt (Results 1 – 25 of 30) sorted by relevance

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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/
H A Dqueryinfo_unit_test.cpp65 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
67 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
90 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
92 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
114 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
116 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
138 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
140 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
162 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
164 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
[all …]
H A Dscoreblk_unit_test.cpp77 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
79 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
81 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
122 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
124 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
126 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
175 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
177 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
179 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
250 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
[all …]
H A Dblastoptions_unit_test.cpp348 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
351 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
517 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
520 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
608 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
881 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
958 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
1029 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
1097 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
1185 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
[all …]
H A Dblastextend_unit_test.cpp273 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_FIXTURE_TEST_SUITE() local
276 SetupQueryInfo(queries, prog, strand_opt, &m_iclsQueryInfo); in BOOST_FIXTURE_TEST_SUITE()
278 prog, strand_opt, blast_msg); in BOOST_FIXTURE_TEST_SUITE()
360 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
363 SetupQueryInfo(queries, prog, strand_opt, &m_iclsQueryInfo); in BOOST_AUTO_TEST_CASE()
365 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
473 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
476 SetupQueryInfo(queries, prog, strand_opt, &m_iclsQueryInfo); in BOOST_AUTO_TEST_CASE()
478 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
H A Dtraceback_unit_test.cpp225 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
228 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
360 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
363 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
493 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
496 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
620 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
623 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
863 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
866 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
[all …]
H A Drmblast_traceback_unit_test.cpp216 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_FIXTURE_TEST_SUITE() local
219 prog, strand_opt, &query_info); in BOOST_FIXTURE_TEST_SUITE()
221 query_info, &query_blk, prog, strand_opt, blast_msg); in BOOST_FIXTURE_TEST_SUITE()
H A Dlinkhsp_unit_test.cpp254 ENa_strand strand_opt = options.GetStrandOption(); in setupLinkHspInputTblastn() local
256 SetupQueryInfo(query_v, m_ProgramType, strand_opt, &m_QueryInfo); in setupLinkHspInputTblastn()
258 m_ProgramType, strand_opt, blast_msg); in setupLinkHspInputTblastn()
452 ENa_strand strand_opt = options.GetStrandOption(); in setupCutoffScores() local
454 SetupQueryInfo(qv, m_ProgramType, strand_opt, &m_QueryInfo); in setupCutoffScores()
456 m_ProgramType, strand_opt, blast_msg); in setupCutoffScores()
H A Dblastsetup_unit_test.cpp888 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
890 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
892 prog, strand_opt, msgs); in BOOST_AUTO_TEST_CASE()
1336 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
1338 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
1340 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
1375 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
1377 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
1379 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
H A Dredoalignment_unit_test.cpp246 ENa_strand strand_opt = kOpts.GetStrandOption(); in runRedoAlignmentCoreUnitTest() local
249 core_prog, strand_opt,&query_info); in runRedoAlignmentCoreUnitTest()
251 query_info, &query_blk, core_prog, strand_opt, blast_msg); in runRedoAlignmentCoreUnitTest()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/
H A Dqueryinfo_unit_test.cpp65 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
67 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
90 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
92 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
114 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
116 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
138 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
140 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
162 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
164 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
[all …]
H A Dscoreblk_unit_test.cpp77 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
79 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
81 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
122 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
124 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
126 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
175 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
177 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
179 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
250 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
[all …]
H A Dblastoptions_unit_test.cpp348 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
351 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
517 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
520 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
608 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
881 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
958 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
1029 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
1097 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
1185 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
[all …]
H A Dblastextend_unit_test.cpp273 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_FIXTURE_TEST_SUITE() local
276 SetupQueryInfo(queries, prog, strand_opt, &m_iclsQueryInfo); in BOOST_FIXTURE_TEST_SUITE()
278 prog, strand_opt, blast_msg); in BOOST_FIXTURE_TEST_SUITE()
360 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
363 SetupQueryInfo(queries, prog, strand_opt, &m_iclsQueryInfo); in BOOST_AUTO_TEST_CASE()
365 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
473 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
476 SetupQueryInfo(queries, prog, strand_opt, &m_iclsQueryInfo); in BOOST_AUTO_TEST_CASE()
478 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
H A Dtraceback_unit_test.cpp225 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
228 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
360 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
363 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
493 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
496 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
620 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
623 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
863 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
866 prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
[all …]
H A Drmblast_traceback_unit_test.cpp216 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_FIXTURE_TEST_SUITE() local
219 prog, strand_opt, &query_info); in BOOST_FIXTURE_TEST_SUITE()
221 query_info, &query_blk, prog, strand_opt, blast_msg); in BOOST_FIXTURE_TEST_SUITE()
H A Dlinkhsp_unit_test.cpp254 ENa_strand strand_opt = options.GetStrandOption(); in setupLinkHspInputTblastn() local
256 SetupQueryInfo(query_v, m_ProgramType, strand_opt, &m_QueryInfo); in setupLinkHspInputTblastn()
258 m_ProgramType, strand_opt, blast_msg); in setupLinkHspInputTblastn()
452 ENa_strand strand_opt = options.GetStrandOption(); in setupCutoffScores() local
454 SetupQueryInfo(qv, m_ProgramType, strand_opt, &m_QueryInfo); in setupCutoffScores()
456 m_ProgramType, strand_opt, blast_msg); in setupCutoffScores()
H A Dblastsetup_unit_test.cpp888 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
890 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
892 prog, strand_opt, msgs); in BOOST_AUTO_TEST_CASE()
1336 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
1338 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
1340 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
1375 ENa_strand strand_opt = kOpts.GetStrandOption(); in BOOST_AUTO_TEST_CASE() local
1377 SetupQueryInfo(query_v, prog, strand_opt, &query_info); in BOOST_AUTO_TEST_CASE()
1379 prog, strand_opt, blast_msg); in BOOST_AUTO_TEST_CASE()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/
H A Dblast_objmgr_priv.hpp211 objects::ENa_strand strand_opt,
230 objects::ENa_strand strand_opt,
251 objects::ENa_strand strand_opt,
H A Dblast_setup_cxx.cpp99 objects::ENa_strand strand_opt) in s_BlastSetup_GetStrand() argument
107 ENa_strand retval = (strand_opt == eNa_strand_both || in s_BlastSetup_GetStrand()
108 strand_opt == eNa_strand_unknown) in s_BlastSetup_GetStrand()
109 ? seqloc_strand : strand_opt; in s_BlastSetup_GetStrand()
119 objects::ENa_strand strand_opt) in BlastSetup_GetStrand() argument
122 strand_opt); in BlastSetup_GetStrand()
129 ENa_strand strand_opt, in s_AdjustFirstContext() argument
143 strand_opt); in s_AdjustFirstContext()
155 objects::ENa_strand strand_opt, in SetupQueryInfo_OMF() argument
489 objects::ENa_strand strand_opt, in SetupQueries_OMF() argument
[all …]
H A Dblast_objmgr_tools.cpp394 objects::ENa_strand strand_opt, in SetupQueryInfo() argument
397 SetupQueryInfo_OMF(CBlastQuerySourceOM(queries, prog), prog, strand_opt, qinfo); in SetupQueryInfo()
405 objects::ENa_strand strand_opt, in SetupQueries() argument
410 strand_opt, messages); in SetupQueries()
H A Dblast_setup.hpp269 objects::ENa_strand strand_opt,
288 objects::ENa_strand strand_opt,
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/
H A Dblast_objmgr_priv.hpp211 objects::ENa_strand strand_opt,
230 objects::ENa_strand strand_opt,
251 objects::ENa_strand strand_opt,
H A Dblast_setup_cxx.cpp99 objects::ENa_strand strand_opt) in s_BlastSetup_GetStrand() argument
107 ENa_strand retval = (strand_opt == eNa_strand_both || in s_BlastSetup_GetStrand()
108 strand_opt == eNa_strand_unknown) in s_BlastSetup_GetStrand()
109 ? seqloc_strand : strand_opt; in s_BlastSetup_GetStrand()
119 objects::ENa_strand strand_opt) in BlastSetup_GetStrand() argument
122 strand_opt); in BlastSetup_GetStrand()
129 ENa_strand strand_opt, in s_AdjustFirstContext() argument
143 strand_opt); in s_AdjustFirstContext()
155 objects::ENa_strand strand_opt, in SetupQueryInfo_OMF() argument
489 objects::ENa_strand strand_opt, in SetupQueries_OMF() argument
[all …]
H A Dblast_objmgr_tools.cpp394 objects::ENa_strand strand_opt, in SetupQueryInfo() argument
397 SetupQueryInfo_OMF(CBlastQuerySourceOM(queries, prog), prog, strand_opt, qinfo); in SetupQueryInfo()
405 objects::ENa_strand strand_opt, in SetupQueries() argument
410 strand_opt, messages); in SetupQueries()
H A Dblast_setup.hpp269 objects::ENa_strand strand_opt,
288 objects::ENa_strand strand_opt,

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