| /dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/ |
| H A D | snoop.h | 15 const int threshloop,
41 const int threshloop,
70 const int threshloop,
101 const int threshloop,
133 const int threshloop,
165 const int threshloop,
195 const int threshloop,
223 const int threshloop,
250 const int threshloop,
275 const int threshloop,
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| H A D | snoop.c | 57 const int threshloop,
87 const int threshloop,
146 const int threshloop,
234 const int threshloop, in alisnoopfold() argument
1264 threshloop, in Lsnoop_subopt()
1506 threshloop, in Lsnoop_subopt_list()
1594 threshloop, in find_max_snoop()
1708 const int threshloop, in snoopfold() argument
2038 const int threshloop, in snoop_subopt() argument
2931 threshloop, in Lsnoop_subopt_list_XS()
[all …]
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| H A D | snofold.c | 67 const int threshloop,
93 const int threshloop,
355 const int threshloop, in snofold() argument
383 energy = fill_arrays(string, max_assym, threshloop, min_s2, max_s2, half_stem, max_half_stem); in snofold()
537 const int threshloop, in alisnofold() argument
565 energy = alifill_arrays(strings, max_assym, threshloop, min_s2, max_s2, half_stem, max_half_stem); in alisnofold()
580 const int threshloop, in alifill_arrays() argument
703 if (mLoop[ij] >= n_seq * threshloop) { in alifill_arrays()
869 const int threshloop, in fill_arrays() argument
1026 if (mLoop[ij] >= threshloop) { in fill_arrays()
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| H A D | snofold.h | 58 const int threshloop,
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| /dports/biology/viennarna/ViennaRNA-2.4.18/src/bin/ |
| H A D | RNAsnoop.c | 113 threshloop, /*energy threshold on loop*/ in main() local
199 threshloop = args_info.minimal_loop_energy_arg; in main()
235 threshloop = MIN2(threshloop, 0); in main()
408 subopt = snoop_subopt(string_t, string_s, delta, 5, penalty, threshloop, in main()
428 Lsnoop_subopt_list(string_t, string_s, delta, 5, penalty, threshloop, in main()
450 … snoop_subopt_XS(string_t, string_s, (const int **)access_s1, delta, 5, penalty, threshloop, in main()
485 … snoop_subopt_XS(string_t, string_s, (const int **)access_s1, delta, 5, penalty, threshloop, in main()
506 … mfe = snoopfold(string_t, string_s, penalty, threshloop, threshLE, threshRE, threshDE, threshD, in main()
574 alisnofold((const char **)AS2, max_asymm, threshloop, min_s2, max_s2, half_stem, max_half_stem); in main()
577 penalty, threshloop, in main()
[all …]
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| /dports/biology/viennarna/ViennaRNA-2.4.18/doc/latex/ |
| H A D | snoop_8h_source.tex | 15 …deLine{00015 \textcolor{keyword}{const} \textcolor{keywordtype}{int} threshloop,}
36 …ne{00041 \textcolor{keyword}{const} \textcolor{keywordtype}{int} threshloop,}
60 …Line{00070 \textcolor{keyword}{const} \textcolor{keywordtype}{int} threshloop,}
86 …0101 \textcolor{keyword}{const} \textcolor{keywordtype}{int} threshloop,}
113 …33 \textcolor{keyword}{const} \textcolor{keywordtype}{int} threshloop,}
140 …ne{00165 \textcolor{keyword}{const} \textcolor{keywordtype}{int} threshloop,}
166 …0195 \textcolor{keyword}{const} \textcolor{keywordtype}{int} threshloop,}
189 … \textcolor{keyword}{const} \textcolor{keywordtype}{int} threshloop,}
211 …ne{00250 \textcolor{keyword}{const} \textcolor{keywordtype}{int} threshloop,}
232 …ne{00275 \textcolor{keyword}{const} \textcolor{keywordtype}{int} threshloop,}
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| H A D | snofold_8h_source.tex | 55 …deLine{00058 \textcolor{keyword}{const} \textcolor{keywordtype}{int} threshloop,}
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