Home
last modified time | relevance | path

Searched refs:treelen (Results 1 – 25 of 29) sorted by relevance

12

/dports/biology/iqtree/IQ-TREE-2.0.6/model/
H A Dmodelfactorymixlen.cpp71 double treelen[tree->mixlen]; in sortClassesByTreeLength() local
73 memset(treelen, 0, sizeof(double)*tree->mixlen); in sortClassesByTreeLength()
79 treelen[j] += brlen[i]; in sortClassesByTreeLength()
83 quicksort(treelen, 0, tree->mixlen-1, index); in sortClassesByTreeLength()
/dports/net/liveMedia/live/liveMedia/
H A DMP3InternalsHuffman.cpp332 unsigned int treelen; /*length of decoder tree */ member
354 &rsf_ht[n].treelen, &rsf_ht[n].xlen, &rsf_ht[n].ylen, &rsf_ht[n].linbits); in read_decoder_table()
380 rsf_ht[n].treelen = rsf_ht[t].treelen; in read_decoder_table()
395 new unsigned char[2*(rsf_ht[n].treelen)]; in read_decoder_table()
396 if ((rsf_ht[n].val == NULL) && ( rsf_ht[n].treelen != 0 )){ in read_decoder_table()
402 for (i=0;(unsigned)i<rsf_ht[n].treelen; i++) { in read_decoder_table()
625 if (h->treelen == 0) return 0; in rsf_huffman_decoder()
646 } while (level || (point < h->treelen) ); in rsf_huffman_decoder()
794 } while (mask || (point < h->treelen)); in lookupHuffmanTableEntry()
851 if (h->treelen == 0) return; in rsf_huffman_encoder()
/dports/biology/mafft/mafft-7.267-without-extensions/core/
H A Dnewick2mafft.rb82 treelen = tree.length
83 tree = zenhan + "(" + tree[poskakko+1..treelen]
H A Dregionalrealignment.rb78 treelen = tree.length
79 tree = zenhan + "(" + tree[poskakko+1..treelen]
H A Dsplittbfast.c1158 int treelen = 0; // by Mathog, a guess in splitseq_mq() local
1254 treelen = 0; in splitseq_mq()
1258 treelen += sprintf( tmptree, "%d", scores[j].numinseq+1 ); in splitseq_mq()
1262 *tree = (char *)calloc( treelen + nin + 15, sizeof( char ) ); in splitseq_mq()
2374 treelen = 0; in splitseq_mq()
2376 treelen += strlen( children[i] ); in splitseq_mq()
2377 *tree = calloc( treelen + nin * 3, sizeof ( char ) ); in splitseq_mq()
2405 parttree[i] = calloc( treelen + nin * 5, sizeof ( char ) ); in splitseq_mq()
/dports/ports-mgmt/pkg/pkg-1.17.5/libpkg/
H A Dpacking.c287 size_t treelen; in packing_append_tree() local
291 treelen = strlen(treepath); in packing_append_tree()
305 if (fts_e->fts_pathlen <= treelen) in packing_append_tree()
312 fputs(fts_e->fts_path + treelen + 1, sb->fp); in packing_append_tree()
/dports/security/gnutls/gnutls-3.6.16/lib/x509/
H A Dname_constraints.c697 unsigned int treelen; in ends_with() local
703 treelen = suffix->size; in ends_with()
704 if((treelen > 0) && (tree[0] == '.')) { in ends_with()
706 treelen--; in ends_with()
709 if (memcmp(str->data + str->size - treelen, tree, treelen) == 0 && in ends_with()
710 str->data[str->size - treelen -1] == '.') in ends_with()
/dports/audio/Maaate/Maaate-0.3.1/src/mpeg/
H A Dlayer3.cc614 int treelen; // 3rd col member
668 unsigned int treelen; // length of decoder tree member
709 ht[n].treelen = hufftab[n].treelen; in read_decoder_table()
727 ht[n].treelen = ht[t].treelen; in read_decoder_table()
735 calloc(2 * (ht[n].treelen)+1, sizeof(unsigned char)); in read_decoder_table()
739 << 2 * (ht[n].treelen) << "\t" in read_decoder_table()
744 for (i = 0; i < ht[n].treelen; i++) { in read_decoder_table()
1562 if ( h->treelen == 0) { in huffman_decoder()
1586 } while (level || (point < ht->treelen) ); in huffman_decoder()
/dports/biology/migrate/migrate-3.6.11/src/
H A Dtree.h70 void calc_treelength (node * p, MYREAL *treelen);
H A Dworld.c4245 MYREAL treelen; in chance_swap_tree() local
4292 treelen = tthis->treelen; in chance_swap_tree()
4293 tthis->treelen = that->treelen; in chance_swap_tree()
4294 that->treelen = treelen; in chance_swap_tree()
4330 world->treelen = 0.0; in polish_world()
4331 calc_treelength (world->root->next->back, &world->treelen); in polish_world()
4335 world->treelen = 0.0; in polish_world()
4385 MYREAL treelen; in chance_swap_tree_unreadable_obsolete() local
4473 treelen = tthis->treelen; in chance_swap_tree_unreadable_obsolete()
4474 tthis->treelen = that->treelen; in chance_swap_tree_unreadable_obsolete()
[all …]
H A Dmcmc1.c371 world->treelen = 0.0; in tree_update()
372 calc_treelength (world->root->next->back, &world->treelen); in tree_update()
381 world->treelen = 0.0; in tree_update()
382 calc_treelength (world->root->next->back, &world->treelen); in tree_update()
1580 (*proposal)->treelen = 0.0; in reset_simple_proposal_variables()
H A Duep.c1046 (proposal->world->options->ueprate * proposal->treelen); in sum_ueplike()
1348 proposal->treelen = in pseudo_ueplikelihood()
1349 calc_pseudotreelength (proposal, proposal->world->treelen); in pseudo_ueplikelihood()
1470 return LOG (like) - (world->options->ueprate * world->treelen); in ueplikelihood()
H A Dmigration.h1118 MYREAL treelen; member
1417 MYREAL treelen; member
H A Dmain.c1756 world->treelen = 0.0; in setup_locus()
1757 calc_treelength (world->root->next->back, &world->treelen); in setup_locus()
1762 world->treelen = 0.0; in setup_locus()
1764 calc_treelength (world->root->next->back, &world->treelen); in setup_locus()
H A Dtree.c5359 calc_treelength (node * p, MYREAL *treelen) in calc_treelength() argument
5371 calc_treelength (pn, treelen); in calc_treelength()
5373 calc_treelength (pnn, treelen); in calc_treelength()
5380 *treelen += pn->tyme - p->tyme; in calc_treelength()
5384 calc_pseudotreelength (proposal_fmt * proposal, MYREAL treelen) in calc_pseudotreelength() argument
5397 len = treelen - (obt - ot) + (proposal->time - ot); in calc_pseudotreelength()
5403 len = treelen - (obt - ot) - (rt - tt) + in calc_pseudotreelength()
5414 len = treelen - (obt - ot) + (proposal->time - ot) - (rt - tt) + in calc_pseudotreelength()
5421 len = treelen - (obt - ot) - (obt - tt) + (proposal->time - ot) in calc_pseudotreelength()
/dports/multimedia/smpeg/smpeg-0.4.4/
H A DMPEGaudio.h111 unsigned int treelen; member
/dports/multimedia/smpeg2/smpeg2-2.0.0/
H A DMPEGaudio.h115 unsigned int treelen; member
/dports/audio/sdl_mixer/SDL_mixer-1.2.12/Xcode/Frameworks/smpeg.framework/Versions/A/Headers/
H A DMPEGaudio.h115 unsigned int treelen;
/dports/audio/splay/splay-0.9.5.2/libs/
H A Dmpegsound.h139 unsigned int treelen; member
/dports/biology/iqtree/IQ-TREE-2.0.6/tree/
H A Dphylotreemixlen.cpp267 double treelen = treeLength(); in initializeMixlen() local
272 relative_treelen[i] = treelen * relative_rate->getRate(i); in initializeMixlen()
/dports/chinese/tin/tin-2.4.5/src/
H A Dsave.c1833 int len, namelen, tagged, treelen; in build_attachment_line() local
1867 treelen = cCOLS - 13 - info_len - namelen; in build_attachment_line()
1868 tree = build_tree(part->depth, treelen, i); in build_attachment_line()
/dports/news/tin/tin-2.4.5/src/
H A Dsave.c1833 int len, namelen, tagged, treelen; in build_attachment_line() local
1867 treelen = cCOLS - 13 - info_len - namelen; in build_attachment_line()
1868 tree = build_tree(part->depth, treelen, i); in build_attachment_line()
/dports/multimedia/smpeg2/smpeg2-2.0.0/audio/
H A Dmpeglayer3.cpp649 if(!(level || ((unsigned)point<ht->treelen))) in huffmandecoder_1()
690 if(!(level || ((unsigned)point<ht->treelen))) in huffmandecoder_2()
770 if(h->treelen) in layer3huffmandecode()
/dports/multimedia/smpeg/smpeg-0.4.4/audio/
H A Dmpeglayer3.cpp649 if(!(level || ((unsigned)point<ht->treelen))) in huffmandecoder_1()
690 if(!(level || ((unsigned)point<ht->treelen))) in huffmandecoder_2()
770 if(h->treelen) in layer3huffmandecode()
/dports/audio/mp3blaster/mp3blaster-3.2.6/mpegsound/
H A Dmpeglayer3.cc661 if(!(level || ((unsigned)point<ht->treelen))) in huffmandecoder_1()
702 if(!(level || ((unsigned)point<ht->treelen))) in huffmandecoder_2()
782 if(h->treelen) in layer3huffmandecode()

12