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/dports/biology/viennarna/ViennaRNA-2.4.18/src/ViennaRNA/
H A Deval.c754 int num_elem, num_g, elem_i, elem_j, up_mis; in en_corr_of_loop_gquad() local
791 up_mis = q - p + 1; in en_corr_of_loop_gquad()
842 up_mis += pos; in en_corr_of_loop_gquad()
910 + (s - r - 1 - up_mis) * P->MLbase; in en_corr_of_loop_gquad()
963 e_minus = (up_mis) * P->MLbase; in en_corr_of_loop_gquad()
1996 up_mis = q - p + 1; in en_corr_of_loop_gquad_ali()
2053 up_mis += pos; in en_corr_of_loop_gquad_ali()
2193 e_minus = (up_mis) * P->MLbase * n_seq; in en_corr_of_loop_gquad_ali()
2233 int num_elem, num_g, up_mis; in covar_en_corr_of_loop_gquad() local
2260 up_mis = q - p + 1; in covar_en_corr_of_loop_gquad()
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