Searched refs:vrna_ud_t (Results 1 – 17 of 17) sorted by relevance
106 vrna_ud_t *domains_up; in exp_eval_hp_loop_fake()193 vrna_ud_t *domains_up; in exp_eval_hp_loop()286 vrna_ud_t *domains_up; in exp_eval_ext_hp_loop()
134 vrna_ud_t *domains_up; in vrna_exp_E_ext_fast_init()327 vrna_ud_t *domains_up; in reduce_ext_ext_fast()454 vrna_ud_t *domains_up; in reduce_ext_up_fast()593 vrna_ud_t *domains_up; in exp_E_ext_fast()
226 vrna_ud_t *domains_up; in vrna_eval_hp_loop()317 vrna_ud_t *domains_up; in eval_hp_loop_fake()
118 vrna_ud_t *domains_up; in exp_E_int_loop()574 vrna_ud_t *domains_up; in exp_E_ext_int_loop()747 vrna_ud_t *domains_up; in exp_E_interior_loop()
119 vrna_ud_t *domains_up = fc->domains_up; in vrna_exp_E_ml_fast_init()396 vrna_ud_t *domains_up; in exp_E_ml_fast()
155 vrna_ud_t *domains_up; in eval_int_loop()270 vrna_ud_t *domains_up; in eval_ext_int_loop()373 vrna_ud_t *domains_up; in E_internal_loop()
916 vrna_ud_t *domains_up; in extend_fm_3p()1058 vrna_ud_t *domains_up; in E_ml_stems_fast()
755 vrna_ud_t *domains_up; in reduce_f5_up()807 vrna_ud_t *domains_up; in reduce_f3_up()
183 vrna_ud_t *domains_up; in BT_ext_loop_f5()
519 vrna_ud_t *domains_up; in BT_mb_loop_split()
348 vrna_ud_t *domains_up; in vrna_ud_motifs_centroid()1010 vc->domains_up = (vrna_ud_t *)vrna_alloc(sizeof(vrna_ud_t)); in init_ligands_up()1115 vrna_ud_t *domains_up; in fill_MFE_matrix()1165 vrna_ud_t *domains_up; in backtrack_MFE_matrix()1443 vrna_ud_t *domains_up; in fill_MEA_matrix()1496 vrna_ud_t *domains_up; in backtrack_MEA_matrix()1592 vrna_ud_t *ud; in add_ligand_motif()1824 vrna_ud_t *domains_up; in get_motifs()1922 vrna_ud_t *domains_up; in prepare_matrices()1978 vrna_ud_t *domains_up; in prepare_exp_matrices()[all …]
204 vrna_ud_t *domains_up; /**< @brief Additional unstructured domains */
69 typedef struct vrna_unstructured_domain_s vrna_ud_t; typedef
618 vrna_ud_t *domains_up; in pf_create_bppm()846 vrna_ud_t *domains_up; in get_ml_helper_arrays()1125 vrna_ud_t *domains_up;1434 vrna_ud_t *domains_up;2409 vrna_ud_t *domains_up;2468 vrna_ud_t *domains_up, *ud_bak;2559 vrna_ud_t *domains_up, *ud_bak;2650 vrna_ud_t *domains_up, *ud_bak;2830 vrna_ud_t *domains_up, *ud_bak;3001 vrna_ud_t *domains_up;[all …]
348 vrna_ud_t *domains_up; in fill_arrays()
281 vrna_ud_t *domains_up; in fill_arrays()
1651 vrna_ud_t *domains_up; in wrap_plist()