1##fileformat=VCFv4.2 2##FILTER=<ID=PASS,Description="All filters passed"> 3##contig=<ID=11,length=150> 4##ALT=<ID=*,Description="Represents allele(s) other than observed."> 5##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL."> 6##INFO=<ID=IDV,Number=1,Type=Integer,Description="Maximum number of raw reads supporting an indel"> 7##INFO=<ID=IMF,Number=1,Type=Float,Description="Maximum fraction of raw reads supporting an indel"> 8##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth"> 9##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias for filtering splice-site artefacts in RNA-seq data (bigger is better)",Version="3"> 10##INFO=<ID=RPBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Read Position Bias (closer to 0 is better)"> 11##INFO=<ID=MQBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Mapping Quality Bias (closer to 0 is better)"> 12##INFO=<ID=BQBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Base Quality Bias (closer to 0 is better)"> 13##INFO=<ID=MQSBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Mapping Quality vs Strand Bias (closer to 0 is better)"> 14##INFO=<ID=SCBZ,Number=1,Type=Float,Description="Mann-Whitney U-z test of Soft-Clip Length Bias (closer to 0 is better)"> 15##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias"> 16##INFO=<ID=SGB,Number=1,Type=Float,Description="Segregation based metric."> 17##INFO=<ID=MQ0F,Number=1,Type=Float,Description="Fraction of MQ0 reads (smaller is better)"> 18##INFO=<ID=I16,Number=16,Type=Float,Description="Auxiliary tag used for calling, see description of bcf_callret1_t in bam2bcf.h"> 19##INFO=<ID=QS,Number=R,Type=Float,Description="Auxiliary tag used for calling"> 20##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods"> 21##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths (high-quality bases)"> 22#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT sample 2311 75 . G <*> 0 . DP=68;I16=6,62,0,0,2437,87909,0,0,3770,217210,0,0,838,15940,0,0;QS=1,0;MQSBZ=0.140975;FS=0;MQ0F=0 PL:AD 0,205,255:68,0 2411 75 . GTAAAATAAAATAAAATAAAATAAA GTAAAATAAAATAAAATAAAATAAAATAAA 0 . INDEL;IDV=6;IMF=0.0882353;DP=68;I16=5,9,1,5,1680,201600,720,86400,840,50400,174,5046,244,5778,147,3609;QS=0.730233,0.269767;VDB=0.00674908;SGB=-0.616816;RPBZ=-3.24592;MQBZ=-6.13241;MQSBZ=0.140975;SCBZ=-0.546919;FS=0;MQ0F=0 PL:AD 83,0,244:45,23 25