1##fileformat=VCFv4.2 2##FILTER=<ID=PASS,Description="All filters passed"> 3##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> 4##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases"> 5##INFO=<ID=STR,Number=A,Type=String,Description="Testing string and Number=A in INFO"> 6##INFO=<ID=TXT,Number=.,Type=String,Description="Testing in INFO"> 7##INFO=<ID=XRF,Number=R,Type=Float,Description="Test Number=AGR in INFO"> 8##INFO=<ID=XAF,Number=A,Type=Float,Description="Test Number=AGR in INFO"> 9##INFO=<ID=XGF,Number=G,Type=Float,Description="Test Number=AGR in INFO"> 10##INFO=<ID=XRI,Number=R,Type=Integer,Description="Test Number=AGR in INFO"> 11##INFO=<ID=XAI,Number=A,Type=Integer,Description="Test Number=AGR in INFO"> 12##INFO=<ID=XGI,Number=G,Type=Integer,Description="Test Number=AGR in INFO"> 13##INFO=<ID=XRS,Number=R,Type=String,Description="Test Number=AGR in INFO"> 14##INFO=<ID=XAS,Number=A,Type=String,Description="Test Number=AGR in INFO"> 15##INFO=<ID=XGS,Number=G,Type=String,Description="Test Number=AGR in INFO"> 16##SAMPLE=<ID=NORMAL,SampleName=B,Description="Less-than (\"<\") and greater-than (\">\") quoting nonsense where double brackets would do just fine",softwareName=<Nonsense,Software>,softwareVer=<119,65>,softwareParam=<.>,MetadataResource=http://somewhere.com/path> 17##INFO=<ID=CIGAR,Number=A,Type=String,Description="test"> 18##INFO=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observations, with partial observations recorded fractionally"> 19##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> 20##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> 21##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> 22##FORMAT=<ID=FGS,Number=G,Type=String,Description="Test Number=AGR in FORMAT"> 23##FORMAT=<ID=FGI,Number=G,Type=Integer,Description="Test Number=AGR in FORMAT"> 24##FORMAT=<ID=FGF,Number=G,Type=Float,Description="Test Number=AGR in FORMAT"> 25##FORMAT=<ID=FAS,Number=A,Type=String,Description="Test Number=AGR in FORMAT"> 26##FORMAT=<ID=FAI,Number=A,Type=Integer,Description="Test Number=AGR in FORMAT"> 27##FORMAT=<ID=FAF,Number=A,Type=Float,Description="Test Number=AGR in FORMAT"> 28##FORMAT=<ID=FRS,Number=R,Type=String,Description="Test Number=AGR in FORMAT"> 29##FORMAT=<ID=FRI,Number=R,Type=Integer,Description="Test Number=AGR in FORMAT"> 30##FORMAT=<ID=FRF,Number=R,Type=Float,Description="Test Number=AGR in FORMAT"> 31##FILTER=<ID=q20,Description="Mapping quality below 20"> 32##contig=<ID=1,assembly=b37,length=249250621> 33##contig=<ID=2,assembly=b37,length=243199373> 34##contig=<ID=3,assembly=b37,length=198022430> 35##contig=<ID=4,assembly=b37,length=191154276> 36##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta 37##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes"> 38##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> 39##INFO=<ID=IA8,Number=.,Type=Integer,Description="test"> 40##INFO=<ID=IA16,Number=.,Type=Integer,Description="test"> 41##INFO=<ID=IA32,Number=.,Type=Integer,Description="test"> 42##INFO=<ID=IAF,Number=.,Type=Float,Description="test"> 43##INFO=<ID=I8,Number=1,Type=Integer,Description="test"> 44##INFO=<ID=I16,Number=1,Type=Integer,Description="test"> 45##INFO=<ID=I32,Number=1,Type=Integer,Description="test"> 46##INFO=<ID=IF,Number=1,Type=Float,Description="test"> 47##FORMAT=<ID=F8,Number=1,Type=Integer,Description="test"> 48##FORMAT=<ID=F16,Number=1,Type=Integer,Description="test"> 49##FORMAT=<ID=F32,Number=1,Type=Integer,Description="test"> 50##FORMAT=<ID=FF,Number=1,Type=Float,Description="test"> 51#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A 521 3162006 . GAA G 238 PASS DP=19;AN=2;AC=1;XRF=1e+06,2e+06;XRI=1111,2222;XRS=ABC,DEF;XAF=1e+06;XAI=1111;XAS=ABC;XGF=1e+06,2e+06,3e+06;XGI=11,22,33;XGS=ABC,DEF,GHI;TXT=ABC,DEF,GHI GT:GQ:DP 0/1:589:19 531 3162007 . TAGGG CAGGG 238 PASS AO=52101;CIGAR=1X4M;AC=1;AN=2 GT:FGS:FGI:FGF:FAS:FAI:FAF:FRS:FRI:FRF 0/1:AAAAAA,BBBBB,CCCC:1,2,3:0.1,0.02,0.003:AAA:1:0.1:A,BB:1,2:0.1,0.02 541 3162008 . TAGGG CAGGG 238 PASS IA8=10,.;IA16=1000,.;IA32=100000,.;IAF=0.003,.;CIGAR=1X4M;AC=1;AN=2 GT:F8:F16:F32:FF 0/1:10:1000:100000:0.003 551 3162009 . TAGGG CAGGG 238 PASS IA8=.;IA16=.;IA32=.;IAF=.;CIGAR=1X4M;AC=1;AN=2 GT:F8:F16:F32:FF 0/1:10:1000:100000:0.003 561 3162010 . TAGGG CAGGG 238 PASS I8=.;I16=.;I32=.;IF=.;CIGAR=1X4M;AC=1;AN=2 GT:F8:F16:F32:FF 0/1:10:1000:100000:0.003 57