11.0.18 2- fix to CLI of bin_qa_plot (thanks to Finesim97 for PR) 3 41.0.17 5- fixed bug with CLI of plotting methods introduced in 1.0.16 6 71.0.16 8- made ~/.checkm the default directory for CheckM reference data 9- "checkm data setRoot <directory>" is no longer interactive and the directory must be given on the command line 10 111.0.15 12- fixed CheckM data setRoot command to work from command line (thanks to cbt for PR) 13- added logging to files 14- improved reporting of CheckM results to include timestamp 15- removed "--force-overwrite" option and now allow output directories to already exist 16 171.0.14 18- fixed bug with test command missing "--force-overwrite" option 19 201.0.13 21- failed commands not exit with error code 1 22- added "--force-overwrite" option 23 241.0.12 25- removed bVerbose option for all commands 26 271.0.11 28- fix to lineage_wf CLI regarding missing coverage_file argument 291.0.10 30- updated version number for pypi 311.0.9 32- removed ScreamingBackpack as a dependency and modified CheckM to never removes user files 33- added "life" as an acceptable rank for the taxonomy_wf so the universal Prokaryotic marker set can be used 34- fixed bug with processing empty gene files 35- fixed bug with processing identical user genomes which cause pplacer to create polytomies 36 37