1Calculates phi and psi torsion angles from protein coordinates 2Version: EMBOSS:6.6.0.0 3 4 Standard (Mandatory) qualifiers: 5 [-infile] infile Clean protein structure coordinates file 6 -chainnumber integer [1] Number of the chain for which torsion 7 angles should be calculated (Integer 1 or 8 more) 9 -startresiduenumber integer [1] First residue in chain for which torsion 10 angles should be calculated (Integer 1 or 11 more) 12 -finishresiduenumber integer [1] Last residue in chain for which torsion 13 angles should be calculated (1 = last 14 residue) (Any integer value) 15 [-outfile] report [*.psiphi] Output report file name (default 16 -rformat table) 17 18 Additional (Optional) qualifiers: (none) 19 Advanced (Unprompted) qualifiers: (none) 20 Associated qualifiers: 21 22 "-outfile" associated qualifiers 23 -rformat2 string Report format 24 -rname2 string Base file name 25 -rextension2 string File name extension 26 -rdirectory2 string Output directory 27 -raccshow2 boolean Show accession number in the report 28 -rdesshow2 boolean Show description in the report 29 -rscoreshow2 boolean Show the score in the report 30 -rstrandshow2 boolean Show the nucleotide strand in the report 31 -rusashow2 boolean Show the full USA in the report 32 -rmaxall2 integer Maximum total hits to report 33 -rmaxseq2 integer Maximum hits to report for one sequence 34 35 General qualifiers: 36 -auto boolean Turn off prompts 37 -stdout boolean Write first file to standard output 38 -filter boolean Read first file from standard input, write 39 first file to standard output 40 -options boolean Prompt for standard and additional values 41 -debug boolean Write debug output to program.dbg 42 -verbose boolean Report some/full command line options 43 -help boolean Report command line options and exit. More 44 information on associated and general 45 qualifiers can be found with -help -verbose 46 -warning boolean Report warnings 47 -error boolean Report errors 48 -fatal boolean Report fatal errors 49 -die boolean Report dying program messages 50 -version boolean Report version number and exit 51 52