1Calculates phi and psi torsion angles from protein coordinates
2Version: EMBOSS:6.6.0.0
3
4   Standard (Mandatory) qualifiers:
5  [-infile]            infile     Clean protein structure coordinates file
6   -chainnumber        integer    [1] Number of the chain for which torsion
7                                  angles should be calculated (Integer 1 or
8                                  more)
9   -startresiduenumber integer    [1] First residue in chain for which torsion
10                                  angles should be calculated (Integer 1 or
11                                  more)
12   -finishresiduenumber integer    [1] Last residue in chain for which torsion
13                                  angles should be calculated (1 = last
14                                  residue) (Any integer value)
15  [-outfile]           report     [*.psiphi] Output report file name (default
16                                  -rformat table)
17
18   Additional (Optional) qualifiers: (none)
19   Advanced (Unprompted) qualifiers: (none)
20   Associated qualifiers:
21
22   "-outfile" associated qualifiers
23   -rformat2           string     Report format
24   -rname2             string     Base file name
25   -rextension2        string     File name extension
26   -rdirectory2        string     Output directory
27   -raccshow2          boolean    Show accession number in the report
28   -rdesshow2          boolean    Show description in the report
29   -rscoreshow2        boolean    Show the score in the report
30   -rstrandshow2       boolean    Show the nucleotide strand in the report
31   -rusashow2          boolean    Show the full USA in the report
32   -rmaxall2           integer    Maximum total hits to report
33   -rmaxseq2           integer    Maximum hits to report for one sequence
34
35   General qualifiers:
36   -auto               boolean    Turn off prompts
37   -stdout             boolean    Write first file to standard output
38   -filter             boolean    Read first file from standard input, write
39                                  first file to standard output
40   -options            boolean    Prompt for standard and additional values
41   -debug              boolean    Write debug output to program.dbg
42   -verbose            boolean    Report some/full command line options
43   -help               boolean    Report command line options and exit. More
44                                  information on associated and general
45                                  qualifiers can be found with -help -verbose
46   -warning            boolean    Report warnings
47   -error              boolean    Report errors
48   -fatal              boolean    Report fatal errors
49   -die                boolean    Report dying program messages
50   -version            boolean    Report version number and exit
51
52