1top_srcdir = @top_srcdir@ 2srcdir = @srcdir@ 3VPATH = @srcdir@ 4SHELL = /bin/sh 5 6prefix = @prefix@ 7exec_prefix = @exec_prefix@ 8datarootdir = @datarootdir@ 9bindir = @bindir@ 10libdir = @libdir@ 11includedir = @includedir@ 12 13CC = @CC@ 14CFLAGS = @CFLAGS@ 15PTHREAD_CFLAGS = @PTHREAD_CFLAGS@ 16VMX_CFLAGS = @VMX_CFLAGS@ 17CPPFLAGS = @CPPFLAGS@ 18LDFLAGS = @LDFLAGS@ 19DEFS = @DEFS@ 20LIBS = -lhmmer -leasel @LIBS@ -lm 21 22AR = @AR@ 23RANLIB = @RANLIB@ 24 25ESLDIR = @HMMER_ESLDIR@ 26MYLIBDIRS = -L../../${ESLDIR} -L.. 27MYINCDIRS = -I../../${ESLDIR} \ 28 -I${top_srcdir}/easel \ 29 -I. \ 30 -I.. \ 31 -I${srcdir} \ 32 -I${top_srcdir}/src \ 33 -I${srcdir}/.. 34 35OBJS = decoding.o\ 36 fwdback.o\ 37 io.o\ 38 msvfilter.o\ 39 null2.o\ 40 optacc.o\ 41 stotrace.o\ 42 vitfilter.o\ 43 p7_omx.o\ 44 p7_oprofile.o\ 45 mpi.o 46 47HDRS = impl_vmx.h 48 49UTESTS = @MPI_UTESTS@\ 50 decoding_utest\ 51 fwdback_utest\ 52 io_utest\ 53 msvfilter_utest\ 54 null2_utest\ 55 optacc_utest\ 56 stotrace_utest\ 57 vitfilter_utest 58 59BENCHMARKS = @MPI_BENCHMARKS@\ 60 decoding_benchmark\ 61 fwdback_benchmark\ 62 msvfilter_benchmark\ 63 null2_benchmark\ 64 optacc_benchmark\ 65 stotrace_benchmark\ 66 vitfilter_benchmark 67 68EXAMPLES =\ 69 fwdback_example\ 70 io_example\ 71 msvfilter_example\ 72 optacc_example\ 73 p7_oprofile_example\ 74 stotrace_example\ 75 vitfilter_example 76 77# beautification magic stolen from git 78QUIET_SUBDIR0 = +${MAKE} -C #space separator after -c 79QUIET_SUBDIR1 = 80ifndef V 81 QUIET_CC = @echo ' ' CC $@; 82 QUIET_GEN = @echo ' ' GEN $@; 83 QUIET_AR = @echo ' ' AR $@; 84 QUIET_SUBDIR0 = +@subdir= 85 QUIET_SUBDIR1 = ; echo ' ' SUBDIR $$subdir; \ 86 ${MAKE} -s -C $$subdir 87endif 88 89.PHONY: all dev check tests distclean clean 90 91all: libhmmer-impl.stamp 92dev: ${UTESTS} ${BENCHMARKS} ${EXAMPLES} 93check: ${UTESTS} 94tests: ${UTESTS} 95 96libhmmer-impl.stamp: ${OBJS} 97 ${QUIET_AR}${AR} -r ../libhmmer.a $? > /dev/null 2>&1 98 @${RANLIB} ../libhmmer.a 99 @echo "impl_lib objects compiled:\c" > $@ 100 @date >> $@ 101 102.FORCE: 103 104${OBJS}: ${HDRS} ../hmmer.h 105 106.c.o: 107 ${QUIET_CC}${CC} ${CFLAGS} ${PTHREAD_CFLAGS} ${VMX_CFLAGS} ${CPPFLAGS} ${DEFS} ${MYINCDIRS} -c $< 108 109${UTESTS}: libhmmer-impl.stamp ../libhmmer.a ${HDRS} ../hmmer.h 110 @BASENAME=`echo $@ | sed -e 's/_utest//'| sed -e 's/^p7_//'` ;\ 111 DFLAG=`echo $${BASENAME} | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`;\ 112 DFLAG=p7$${DFLAG}_TESTDRIVE ;\ 113 if test -e ${srcdir}/p7_$${BASENAME}.c; then \ 114 DFILE=${srcdir}/p7_$${BASENAME}.c ;\ 115 else \ 116 DFILE=${srcdir}/$${BASENAME}.c ;\ 117 fi;\ 118 if test ${V} ;\ 119 then echo "${CC} ${CFLAGS} ${PTHREAD_CFLAGS} ${VMX_CFLAGS} ${CPPFLAGS} ${LDFLAGS} ${DEFS} ${MYLIBDIRS} ${MYINCDIRS} -D$${DFLAG} -o $@ $${DFILE} ${LIBS}" ;\ 120 else echo ' ' GEN $@ ;\ 121 fi ;\ 122 ${CC} ${CFLAGS} ${PTHREAD_CFLAGS} ${VMX_CFLAGS} ${CPPFLAGS} ${LDFLAGS} ${DEFS} ${MYLIBDIRS} ${MYINCDIRS} -D$${DFLAG} -o $@ $${DFILE} ${LIBS} 123 124${BENCHMARKS}: libhmmer-impl.stamp ../libhmmer.a ${HDRS} ../hmmer.h 125 @BASENAME=`echo $@ | sed -e 's/_benchmark//' | sed -e 's/^p7_//'`;\ 126 DFLAG=`echo $${BASENAME} | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`;\ 127 DFLAG=p7$${DFLAG}_BENCHMARK ;\ 128 if test -e ${srcdir}/p7_$${BASENAME}.c; then \ 129 DFILE=${srcdir}/p7_$${BASENAME}.c ;\ 130 else \ 131 DFILE=${srcdir}/$${BASENAME}.c ;\ 132 fi;\ 133 if test ${V} ;\ 134 then echo "${CC} ${CFLAGS} ${PTHREAD_CFLAGS} ${VMX_CFLAGS} ${CPPFLAGS} ${LDFLAGS} ${DEFS} ${MYLIBDIRS} ${MYINCDIRS} -D$${DFLAG} -o $@ $${DFILE} ${LIBS}" ;\ 135 else echo ' ' GEN $@ ;\ 136 fi ;\ 137 ${CC} ${CFLAGS} ${PTHREAD_CFLAGS} ${VMX_CFLAGS} ${CPPFLAGS} ${LDFLAGS} ${DEFS} ${MYLIBDIRS} ${MYINCDIRS} -D$${DFLAG} -o $@ $${DFILE} ${LIBS} 138 139${EXAMPLES}: libhmmer-impl.stamp ../libhmmer.a ${HDRS} ../hmmer.h 140 @BASENAME=`echo $@ | sed -e 's/_example//'| sed -e 's/^p7_//'` ;\ 141 DFLAG=`echo $${BASENAME} | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`;\ 142 DFLAG=p7$${DFLAG}_EXAMPLE ;\ 143 if test -e ${srcdir}/p7_$${BASENAME}.c; then \ 144 DFILE=${srcdir}/p7_$${BASENAME}.c ;\ 145 else \ 146 DFILE=${srcdir}/$${BASENAME}.c ;\ 147 fi;\ 148 if test ${V} ;\ 149 then echo "${CC} ${CFLAGS} ${PTHREAD_CFLAGS} ${VMX_CFLAGS} ${CPPFLAGS} ${LDFLAGS} ${DEFS} ${MYLIBDIRS} ${MYINCDIRS} -D$${DFLAG} -o $@ $${DFILE} ${LIBS}" ;\ 150 else echo ' ' GEN $@ ;\ 151 fi ;\ 152 ${CC} ${CFLAGS} ${PTHREAD_CFLAGS} ${VMX_CFLAGS} ${CPPFLAGS} ${LDFLAGS} ${DEFS} ${MYLIBDIRS} ${MYINCDIRS} -D$${DFLAG} -o $@ $${DFILE} ${LIBS} 153 154clean: 155 -rm -f impl_lib.stamp 156 -rm -f ${UTESTS} 157 -rm -f ${BENCHMARKS} 158 -rm -f ${EXAMPLES} 159 -rm -f *.o *~ Makefile.bak core TAGS gmon.out cscope.out 160 -rm -f *.gcno 161 for prog in ${UTESTS} ${BENCHMARKS} ${EXAMPLES}; do \ 162 if test -d $$prog.dSYM; then rm -rf $$prog.dSYM ; fi ;\ 163 done 164ifndef V 165 @echo ' ' CLEAN impl_vmx 166endif 167 168 169distclean: clean 170 -rm -f Makefile 171 172