1 /* 2 * Jalview - A Sequence Alignment Editor and Viewer (2.11.1.4) 3 * Copyright (C) 2021 The Jalview Authors 4 * 5 * This file is part of Jalview. 6 * 7 * Jalview is free software: you can redistribute it and/or 8 * modify it under the terms of the GNU General Public License 9 * as published by the Free Software Foundation, either version 3 10 * of the License, or (at your option) any later version. 11 * 12 * Jalview is distributed in the hope that it will be useful, but 13 * WITHOUT ANY WARRANTY; without even the implied warranty 14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 15 * PURPOSE. See the GNU General Public License for more details. 16 * 17 * You should have received a copy of the GNU General Public License 18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>. 19 * The Jalview Authors are detailed in the 'AUTHORS' file. 20 */ 21 package jalview.io; 22 23 import jalview.datamodel.SequenceI; 24 25 import java.io.IOException; 26 27 /** 28 * jalview flatfile for io of sequence ID mapping data 29 * DATABASE\t<nickname>\t<name>\t<version>... properties?jdbc, url, handler 30 * DBREF 31 * <seqID>\tDBID\taccno\t|seqstart,seqend,start,end...|\t|dbstart,dbend,...| 32 * 33 */ 34 public class DBRefFile extends AlignFile 35 { 36 37 @Override parse()38 public void parse() throws IOException 39 { 40 // TODO Auto-generated method stub 41 42 } 43 44 @Override print(SequenceI[] sqs, boolean jvsuffix)45 public String print(SequenceI[] sqs, boolean jvsuffix) 46 { 47 // TODO Auto-generated method stub 48 return null; 49 } 50 51 } 52