1 /**
2  * \file    addModelHistory.cpp
3  * \brief   adds Model History to a model
4  * \author  Sarah Keating
5  *
6  * <!--------------------------------------------------------------------------
7  * This sample program is distributed under a different license than the rest
8  * of libSBML.  This program uses the open-source MIT license, as follows:
9  *
10  * Copyright (c) 2013-2018 by the California Institute of Technology
11  * (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
12  * and the University of Heidelberg (Germany), with support from the National
13  * Institutes of Health (USA) under grant R01GM070923.  All rights reserved.
14  *
15  * Permission is hereby granted, free of charge, to any person obtaining a
16  * copy of this software and associated documentation files (the "Software"),
17  * to deal in the Software without restriction, including without limitation
18  * the rights to use, copy, modify, merge, publish, distribute, sublicense,
19  * and/or sell copies of the Software, and to permit persons to whom the
20  * Software is furnished to do so, subject to the following conditions:
21  *
22  * The above copyright notice and this permission notice shall be included in
23  * all copies or substantial portions of the Software.
24  *
25  * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
26  * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
27  * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
28  * THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
29  * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
30  * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
31  * DEALINGS IN THE SOFTWARE.
32  *
33  * Neither the name of the California Institute of Technology (Caltech), nor
34  * of the European Bioinformatics Institute (EMBL-EBI), nor of the University
35  * of Heidelberg, nor the names of any contributors, may be used to endorse
36  * or promote products derived from this software without specific prior
37  * written permission.
38  * ------------------------------------------------------------------------ -->
39  */
40 
41 using System;
42 using System.Collections.Generic;
43 using System.IO;
44 using System.Text;
45 using libsbmlcs;
46 
47 public class AddModelHistory
48 {
printStatus(string message, long status)49     private static void printStatus(string message, long status)
50     {
51         string statusString;
52         switch (status)
53         {
54             case libsbml.LIBSBML_OPERATION_SUCCESS:
55                 statusString = "succeeded";
56                 break;
57             case libsbml.LIBSBML_INVALID_OBJECT:
58                 statusString = "invalid object";
59                 break;
60             case libsbml.LIBSBML_OPERATION_FAILED:
61                 statusString = "operation failed";
62                 break;
63             default:
64                 statusString = "unknown";
65                 break;
66         }
67 
68         Console.Write(message + statusString + Environment.NewLine);
69 
70     }
71 
Main(string[] args)72     public static int Main(string[] args)
73     {
74 
75 
76         SBMLDocument d;
77         int errors;
78 
79         if (args.Length != 2)
80         {
81             Console.Write(Environment.NewLine
82                                       + "  usage: addModelHistory <input-filename> <output-filename>" + Environment.NewLine
83                                       + Environment.NewLine);
84             return 2;
85         }
86 
87 
88         d = libsbml.readSBML(args[0]);
89         errors = (int)d.getNumErrors();
90 
91         if (errors > 0)
92         {
93             Console.Write("Read Error(s):" + Environment.NewLine);
94             d.printErrors();
95 
96             Console.Write("Correct the above and re-run." + Environment.NewLine);
97         }
98         else
99         {
100             ModelHistory h = new ModelHistory();
101 
102             ModelCreator c = new ModelCreator();
103             c.setFamilyName("Keating");
104             c.setGivenName("Sarah");
105             c.setEmail("sbml-team@caltech.edu");
106             c.setOrganization("University of Hertfordshire");
107 
108             long status = h.addCreator(c);
109             printStatus("Status for addCreator: ", status);
110 
111 
112             Date date = new Date("1999-11-13T06:54:32");
113             Date date2 = new Date("2007-11-30T06:54:00-02:00");
114 
115             status = h.setCreatedDate(date);
116             printStatus("Set created date:      ", status);
117 
118             status = h.setModifiedDate(date2);
119             printStatus("Set modified date:     ", status);
120 
121             status = d.getModel().setModelHistory(h);
122             printStatus("Set model history:     ", status);
123 
124 
125             libsbml.writeSBML(d, args[1]);
126         }
127 
128         return errors;
129     }
130 
131 }
132