1#!/usr/bin/env ruby
2#
3##
4## \file    addModelHistory.py
5## \brief   adds Model History to a model
6## \author  Sarah Keating
7##
8## <!--------------------------------------------------------------------------
9## This sample program is distributed under a different license than the rest
10## of libSBML.  This program uses the open-source MIT license, as follows:
11##
12## Copyright (c) 2013-2018 by the California Institute of Technology
13## (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
14## and the University of Heidelberg (Germany), with support from the National
15## Institutes of Health (USA) under grant R01GM070923.  All rights reserved.
16##
17## Permission is hereby granted, free of charge, to any person obtaining a
18## copy of this software and associated documentation files (the "Software"),
19## to deal in the Software without restriction, including without limitation
20## the rights to use, copy, modify, merge, publish, distribute, sublicense,
21## and/or sell copies of the Software, and to permit persons to whom the
22## Software is furnished to do so, subject to the following conditions:
23##
24## The above copyright notice and this permission notice shall be included in
25## all copies or substantial portions of the Software.
26##
27## THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
28## IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
29## FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
30## THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
31## LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
32## FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
33## DEALINGS IN THE SOFTWARE.
34##
35## Neither the name of the California Institute of Technology (Caltech), nor
36## of the European Bioinformatics Institute (EMBL-EBI), nor of the University
37## of Heidelberg, nor the names of any contributors, may be used to endorse
38## or promote products derived from this software without specific prior
39## written permission.
40## ------------------------------------------------------------------------ -->
41##
42
43
44
45require 'libSBML'
46
47
48def printStatus(message, status)
49  statusString = "";
50  if status == LibSBML::LIBSBML_OPERATION_SUCCESS
51    statusString = "succeeded";
52  elsif status == LibSBML::LIBSBML_INVALID_OBJECT
53    statusString = "invalid object";
54  elsif status == LibSBML::LIBSBML_OPERATION_FAILED
55    statusString = "operation failed";
56  else
57    statusString = "unknown";
58  end
59  puts "#{message} #{statusString}"
60end
61
62
63if ARGV.size != 2:
64  puts "usage: addModelHistory <input-filename> <output-filename>"
65  puts "Adds a model history to the model"
66  exit(2)
67end
68
69d = LibSBML::readSBML(ARGV[0]);
70errors = d.getNumErrors
71
72if errors > 0
73    print("Read Error(s):" + "\n");
74    d.printErrors();
75    print("Correct the above and re-run." + "\n");
76    exit(errors);
77end
78
79h = LibSBML::ModelHistory.new
80
81c = LibSBML::ModelCreator.new
82c.setFamilyName("Keating");
83c.setGivenName("Sarah");
84c.setEmail("sbml-team@caltech.edu");
85c.setOrganization("University of Hertfordshire");
86
87status = h.addCreator(c);
88printStatus("Status for addCreator: ", status);
89
90
91date = LibSBML::Date.new("1999-11-13T06:54:32");
92date2 = LibSBML::Date.new("2007-11-30T06:54:00-02:00");
93
94status = h.setCreatedDate(date);
95printStatus("Set created date:      ", status);
96
97status = h.setModifiedDate(date2);
98printStatus("Set modified date:     ", status);
99
100status = d.getModel().setModelHistory(h);
101printStatus("Set model history:     ", status);
102
103
104LibSBML::writeSBML(d, ARGV[1]);
105
106exit(errors);
107
108
109
110