1 /// @file TestGetMultipleObjects.cs 2 /// @brief GetMultipleObjects unit tests 3 /// @author Frank Bergmann (Csharp conversion) 4 /// @author Akiya Jouraku (Csharp conversion) 5 /// @author Sarah Keating 6 7 /// 8 /// ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ====== 9 /// 10 /// DO NOT EDIT THIS FILE. 11 /// 12 /// This file was generated automatically by converting the file located at 13 /// src/sbml/test/TestGetMultipleObjects.cpp 14 /// using the conversion program dev/utilities/translateTests/translateTests.pl. 15 /// Any changes made here will be lost the next time the file is regenerated. 16 /// 17 /// ----------------------------------------------------------------------------- 18 /// This file is part of libSBML. Please visit http://sbml.org for more 19 /// information about SBML, and the latest version of libSBML. 20 /// 21 /// Copyright 2005-2010 California Institute of Technology. 22 /// Copyright 2002-2005 California Institute of Technology and 23 /// Japan Science and Technology Corporation. 24 /// 25 /// This library is free software; you can redistribute it and/or modify it 26 /// under the terms of the GNU Lesser General Public License as published by 27 /// the Free Software Foundation. A copy of the license agreement is provided 28 /// in the file named "LICENSE.txt" included with this software distribution 29 /// and also available online as http://sbml.org/software/libsbml/license.html 30 /// ----------------------------------------------------------------------------- 31 32 33 namespace LibSBMLCSTest.sbml { 34 35 using libsbmlcs; 36 37 using System; 38 39 using System.IO; 40 41 public class TestGetMultipleObjects { 42 public class AssertionError : System.Exception 43 { AssertionError()44 public AssertionError() : base() 45 { 46 47 } 48 } 49 50 assertTrue(bool condition)51 static void assertTrue(bool condition) 52 { 53 if (condition == true) 54 { 55 return; 56 } 57 throw new AssertionError(); 58 } 59 assertEquals(object a, object b)60 static void assertEquals(object a, object b) 61 { 62 if ( (a == null) && (b == null) ) 63 { 64 return; 65 } 66 else if ( (a == null) || (b == null) ) 67 { 68 throw new AssertionError(); 69 } 70 else if (a.Equals(b)) 71 { 72 return; 73 } 74 75 throw new AssertionError(); 76 } 77 assertNotEquals(object a, object b)78 static void assertNotEquals(object a, object b) 79 { 80 if ( (a == null) && (b == null) ) 81 { 82 throw new AssertionError(); 83 } 84 else if ( (a == null) || (b == null) ) 85 { 86 return; 87 } 88 else if (a.Equals(b)) 89 { 90 throw new AssertionError(); 91 } 92 } 93 assertEquals(bool a, bool b)94 static void assertEquals(bool a, bool b) 95 { 96 if ( a == b ) 97 { 98 return; 99 } 100 throw new AssertionError(); 101 } 102 assertNotEquals(bool a, bool b)103 static void assertNotEquals(bool a, bool b) 104 { 105 if ( a != b ) 106 { 107 return; 108 } 109 throw new AssertionError(); 110 } 111 assertEquals(int a, int b)112 static void assertEquals(int a, int b) 113 { 114 if ( a == b ) 115 { 116 return; 117 } 118 throw new AssertionError(); 119 } 120 assertNotEquals(int a, int b)121 static void assertNotEquals(int a, int b) 122 { 123 if ( a != b ) 124 { 125 return; 126 } 127 throw new AssertionError(); 128 } 129 130 test_GetMultipleObjects_allElements()131 public void test_GetMultipleObjects_allElements() 132 { 133 SBMLReader reader = new SBMLReader(); 134 SBMLDocument d; 135 string filename = "../../sbml/test/test-data/"; 136 filename += "multiple-ids.xml"; 137 d = reader.readSBML(filename); 138 if (d == null); 139 { 140 } 141 SBaseList list = d.getListOfAllElements(); 142 assertTrue( list.getSize() == 37 ); 143 d = null; 144 } 145 test_GetMultipleObjects_getId()146 public void test_GetMultipleObjects_getId() 147 { 148 SBMLReader reader = new SBMLReader(); 149 SBMLDocument d; 150 string filename = "../../sbml/test/test-data/"; 151 filename += "multiple-ids.xml"; 152 d = reader.readSBML(filename); 153 if (d == null); 154 { 155 } 156 SBase obj = d.getElementBySId("no_id"); 157 assertTrue( obj == null ); 158 obj = d.getElementBySId(""); 159 assertTrue( obj == null ); 160 obj = d.getElementBySId("find_id"); 161 assertTrue( obj != null ); 162 assertTrue( obj.getTypeCode() == libsbml.SBML_MODEL ); 163 obj = d.getElementBySId("func1"); 164 assertTrue( obj != null ); 165 assertTrue( obj.getTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ); 166 obj = d.getElementBySId("comp"); 167 assertTrue( obj != null ); 168 assertTrue( obj.getTypeCode() == libsbml.SBML_COMPARTMENT ); 169 obj = d.getElementBySId("b"); 170 assertTrue( obj != null ); 171 assertTrue( obj.getTypeCode() == libsbml.SBML_SPECIES ); 172 obj = d.getElementBySId("x"); 173 assertTrue( obj != null ); 174 assertTrue( obj.getTypeCode() == libsbml.SBML_PARAMETER ); 175 obj = d.getElementBySId("J0"); 176 assertTrue( obj != null ); 177 assertTrue( obj.getTypeCode() == libsbml.SBML_REACTION ); 178 obj = d.getElementBySId("E0"); 179 assertTrue( obj != null ); 180 assertTrue( obj.getTypeCode() == libsbml.SBML_EVENT ); 181 d = null; 182 } 183 test_GetMultipleObjects_getMetaId()184 public void test_GetMultipleObjects_getMetaId() 185 { 186 SBMLReader reader = new SBMLReader(); 187 SBMLDocument d; 188 string filename = "../../sbml/test/test-data/"; 189 filename += "multiple-ids.xml"; 190 d = reader.readSBML(filename); 191 if (d == null); 192 { 193 } 194 SBase obj = d.getElementByMetaId("no_id"); 195 assertTrue( obj == null ); 196 obj = d.getElementByMetaId(""); 197 assertTrue( obj == null ); 198 obj = d.getElementByMetaId("meta1"); 199 assertTrue( obj != null ); 200 assertTrue( obj.getTypeCode() == libsbml.SBML_DOCUMENT ); 201 obj = d.getElementByMetaId("meta2"); 202 assertTrue( obj != null ); 203 assertTrue( obj.getTypeCode() == libsbml.SBML_MODEL ); 204 obj = d.getElementByMetaId("meta3"); 205 assertTrue( obj != null ); 206 assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ); 207 assertTrue( ((ListOf) obj).getItemTypeCode() == libsbml.SBML_COMPARTMENT ); 208 obj = d.getElementByMetaId("meta4"); 209 assertTrue( obj != null ); 210 assertTrue( obj.getTypeCode() == libsbml.SBML_COMPARTMENT ); 211 obj = d.getElementByMetaId("meta5"); 212 assertTrue( obj != null ); 213 assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ); 214 assertTrue( ((ListOf) obj).getItemTypeCode() == libsbml.SBML_SPECIES ); 215 obj = d.getElementByMetaId("meta6"); 216 assertTrue( obj != null ); 217 assertTrue( obj.getTypeCode() == libsbml.SBML_SPECIES ); 218 obj = d.getElementByMetaId("meta7"); 219 assertTrue( obj != null ); 220 assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ); 221 assertTrue( ((ListOf) obj).getItemTypeCode() == libsbml.SBML_REACTION ); 222 obj = d.getElementByMetaId("meta8"); 223 assertTrue( obj != null ); 224 assertTrue( obj.getTypeCode() == libsbml.SBML_REACTION ); 225 obj = d.getElementByMetaId("meta9"); 226 assertTrue( obj != null ); 227 assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ); 228 assertTrue( ((ListOf) obj).getItemTypeCode() == libsbml.SBML_SPECIES_REFERENCE ); 229 obj = d.getElementByMetaId("meta10"); 230 assertTrue( obj != null ); 231 assertTrue( obj.getTypeCode() == libsbml.SBML_SPECIES_REFERENCE ); 232 obj = d.getElementByMetaId("meta11"); 233 assertTrue( obj != null ); 234 assertTrue( obj.getTypeCode() == libsbml.SBML_KINETIC_LAW ); 235 obj = d.getElementByMetaId("meta12"); 236 assertTrue( obj != null ); 237 assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ); 238 assertTrue( ((ListOf) obj).getItemTypeCode() == libsbml.SBML_EVENT ); 239 obj = d.getElementByMetaId("meta13"); 240 assertTrue( obj != null ); 241 assertTrue( obj.getTypeCode() == libsbml.SBML_EVENT ); 242 obj = d.getElementByMetaId("meta14"); 243 assertTrue( obj != null ); 244 assertTrue( obj.getTypeCode() == libsbml.SBML_TRIGGER ); 245 obj = d.getElementByMetaId("meta15"); 246 assertTrue( obj != null ); 247 assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ); 248 assertTrue( ((ListOf) obj).getItemTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT ); 249 obj = d.getElementByMetaId("meta16"); 250 assertTrue( obj != null ); 251 assertTrue( obj.getTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT ); 252 obj = d.getElementByMetaId("meta17"); 253 assertTrue( obj != null ); 254 assertTrue( obj.getTypeCode() == libsbml.SBML_DELAY ); 255 obj = d.getElementByMetaId("meta18"); 256 assertTrue( obj != null ); 257 assertTrue( obj.getTypeCode() == libsbml.SBML_PARAMETER ); 258 obj = d.getElementByMetaId("meta19"); 259 assertTrue( obj != null ); 260 assertTrue( obj.getTypeCode() == libsbml.SBML_PRIORITY ); 261 obj = d.getElementByMetaId("meta20"); 262 assertTrue( obj != null ); 263 assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ); 264 assertTrue( ((ListOf) obj).getItemTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ); 265 obj = d.getElementByMetaId("meta21"); 266 assertTrue( obj != null ); 267 assertTrue( obj.getTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ); 268 obj = d.getElementByMetaId("meta22"); 269 assertTrue( obj != null ); 270 assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ); 271 assertTrue( ((ListOf) obj).getItemTypeCode() == libsbml.SBML_INITIAL_ASSIGNMENT ); 272 obj = d.getElementByMetaId("meta23"); 273 assertTrue( obj != null ); 274 assertTrue( obj.getTypeCode() == libsbml.SBML_INITIAL_ASSIGNMENT ); 275 obj = d.getElementByMetaId("meta24"); 276 assertTrue( obj != null ); 277 assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ); 278 assertTrue( ((ListOf) obj).getItemTypeCode() == libsbml.SBML_RULE ); 279 obj = d.getElementByMetaId("meta25"); 280 assertTrue( obj != null ); 281 assertTrue( obj.getTypeCode() == libsbml.SBML_RATE_RULE ); 282 obj = d.getElementByMetaId("meta26"); 283 assertTrue( obj != null ); 284 assertTrue( obj.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ); 285 obj = d.getElementByMetaId("meta27"); 286 assertTrue( obj != null ); 287 assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ); 288 assertTrue( ((ListOf) obj).getItemTypeCode() == libsbml.SBML_LOCAL_PARAMETER ); 289 obj = d.getElementByMetaId("meta28"); 290 assertTrue( obj != null ); 291 assertTrue( obj.getTypeCode() == libsbml.SBML_LOCAL_PARAMETER ); 292 obj = d.getElementByMetaId("meta29"); 293 assertTrue( obj != null ); 294 assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ); 295 assertTrue( ((ListOf) obj).getItemTypeCode() == libsbml.SBML_UNIT_DEFINITION ); 296 obj = d.getElementByMetaId("meta30"); 297 assertTrue( obj != null ); 298 assertTrue( obj.getTypeCode() == libsbml.SBML_UNIT_DEFINITION ); 299 obj = d.getElementByMetaId("meta31"); 300 assertTrue( obj != null ); 301 assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ); 302 assertTrue( ((ListOf) obj).getItemTypeCode() == libsbml.SBML_UNIT ); 303 obj = d.getElementByMetaId("meta32"); 304 assertTrue( obj != null ); 305 assertTrue( obj.getTypeCode() == libsbml.SBML_UNIT ); 306 obj = d.getElementByMetaId("meta33"); 307 assertTrue( obj != null ); 308 assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ); 309 assertTrue( ((ListOf) obj).getItemTypeCode() == libsbml.SBML_PARAMETER ); 310 obj = d.getElementByMetaId("meta34"); 311 assertTrue( obj != null ); 312 assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ); 313 assertTrue( ((ListOf) obj).getItemTypeCode() == libsbml.SBML_MODIFIER_SPECIES_REFERENCE ); 314 obj = d.getElementByMetaId("meta35"); 315 assertTrue( obj != null ); 316 assertTrue( obj.getTypeCode() == libsbml.SBML_MODIFIER_SPECIES_REFERENCE ); 317 d = null; 318 } 319 test_GetMultipleObjects_noAssignments()320 public void test_GetMultipleObjects_noAssignments() 321 { 322 SBMLReader reader = new SBMLReader(); 323 SBMLDocument d; 324 string filename = "../../sbml/test/test-data/"; 325 filename += "assignments-invalid.xml"; 326 d = reader.readSBML(filename); 327 if (d.getModel() == null); 328 { 329 } 330 SBase obj = d.getElementBySId("ia"); 331 assertTrue( obj == null ); 332 obj = d.getElementByMetaId("ia_meta"); 333 assertTrue( obj != null ); 334 assertTrue( obj.getTypeCode() == libsbml.SBML_INITIAL_ASSIGNMENT ); 335 obj = d.getElementBySId("ar"); 336 assertTrue( obj == null ); 337 obj = d.getElementByMetaId("ar_meta"); 338 assertTrue( obj != null ); 339 assertTrue( obj.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ); 340 obj = d.getElementBySId("rr"); 341 assertTrue( obj == null ); 342 obj = d.getElementByMetaId("rr_meta"); 343 assertTrue( obj != null ); 344 assertTrue( obj.getTypeCode() == libsbml.SBML_RATE_RULE ); 345 obj = d.getElementBySId("ea"); 346 assertTrue( obj == null ); 347 obj = d.getElementByMetaId("ea_meta"); 348 assertTrue( obj != null ); 349 assertTrue( obj.getTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT ); 350 d = null; 351 } 352 test_GetMultipleObjects_noLocalParameters()353 public void test_GetMultipleObjects_noLocalParameters() 354 { 355 SBMLReader reader = new SBMLReader(); 356 SBMLDocument d; 357 string filename = "../../sbml/test/test-data/"; 358 filename += "multiple-ids.xml"; 359 d = reader.readSBML(filename); 360 if (d == null); 361 { 362 } 363 SBase rxn = d.getElementBySId("J0"); 364 assertTrue( rxn != null ); 365 SBase obj = rxn.getElementBySId("x"); 366 assertTrue( obj == null ); 367 obj = rxn.getElementByMetaId("meta28"); 368 assertTrue( obj != null ); 369 assertTrue( obj.getTypeCode() == libsbml.SBML_LOCAL_PARAMETER ); 370 d = null; 371 } 372 test_GetMultipleObjects_noUnits()373 public void test_GetMultipleObjects_noUnits() 374 { 375 SBMLReader reader = new SBMLReader(); 376 SBMLDocument d; 377 string filename = "../../sbml/test/test-data/"; 378 filename += "multiple-ids.xml"; 379 d = reader.readSBML(filename); 380 if (d == null); 381 { 382 } 383 SBase obj = d.getElementBySId("volume"); 384 assertTrue( obj == null ); 385 obj = d.getElementByMetaId("meta30"); 386 assertTrue( obj != null ); 387 assertTrue( obj.getTypeCode() == libsbml.SBML_UNIT_DEFINITION ); 388 d = null; 389 } 390 391 } 392 } 393