1 #ifndef _CORRELATION_ 2 #define _CORRELATION_ 3 /* Correlation table of all parameters for Bayesian inference 4 and using the profile likelihood tables 5 (1) Bayesian inference: read parameter list and calculate correlation table 6 (2) ML inference: read profile table and construct correlation table 7 [uses print_cov .... already present, but needs testing] 8 9 10 (c) Peter Beerli 2012 11 12 Permission is hereby granted, free of charge, to any person obtaining 13 a copy of this software and associated documentation files (the 14 "Software"), to deal in the Software without restriction, including 15 without limitation the rights to use, copy, modify, merge, publish, 16 distribute, sublicense, and/or sell copies of the Software, and to 17 permit persons to whom the Software is furnished to do so, subject 18 to the following conditions: 19 20 The above copyright notice and this permission notice shall be 21 included in all copies or substantial portions of the Software. 22 23 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, 24 EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF 25 MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. 26 IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR 27 ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF 28 CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION 29 WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. 30 */ 31 #include "definitions.h" 32 #include "migration.h" 33 34 void covariance_bayes(world_fmt *world, long locus); 35 void covariance_bayes2(world_fmt *world, long locus, MYREAL *params); 36 void covariance_summary(world_fmt *world); 37 void adjust_covariance(MYREAL **cov, long size, long n); 38 #endif 39