1; Configuration file for split_query-cppunit.cpp 2[QuerySplitter_BlastnMultiQueryMultiChunk_BothStrands] 3NumChunks = 24 4Chunk0Queries = 0 5Chunk1Queries = 0 6Chunk2Queries = 0 7Chunk3Queries = 0 8Chunk4Queries = 0 9Chunk5Queries = 0 10Chunk6Queries = 0 11Chunk7Queries = 0 12Chunk8Queries = 0, 1 13Chunk9Queries = 1 14Chunk10Queries = 1 15Chunk11Queries = 1 16Chunk12Queries = 1 17Chunk13Queries = 1 18Chunk14Queries = 1, 2 19Chunk15Queries = 2 20Chunk16Queries = 2 21Chunk17Queries = 2 22Chunk18Queries = 2 23Chunk19Queries = 2, 3 24Chunk20Queries = 3 25Chunk21Queries = 3 26Chunk22Queries = 3 27Chunk23Queries = 3 28 29Chunk0Contexts = 0, 1 30Chunk1Contexts = 0, 1 31Chunk2Contexts = 0, 1 32Chunk3Contexts = 0, 1 33Chunk4Contexts = 0, 1 34Chunk5Contexts = 0, 1 35Chunk6Contexts = 0, 1 36Chunk7Contexts = 0, 1 37Chunk8Contexts = 0, 1, 2, 3 38Chunk9Contexts = 2, 3 39Chunk10Contexts = 2, 3 40Chunk11Contexts = 2, 3 41Chunk12Contexts = 2, 3 42Chunk13Contexts = 2, 3 43Chunk14Contexts = 2, 3, 4, 5 44Chunk15Contexts = 4, 5 45Chunk16Contexts = 4, 5 46Chunk17Contexts = 4, 5 47Chunk18Contexts = 4, 5 48Chunk19Contexts = 4, 5, 6, 7 49Chunk20Contexts = 6, 7 50Chunk21Contexts = 6, 7 51Chunk22Contexts = 6, 7 52Chunk23Contexts = 6, 7 53 54Chunk0ContextOffsets = 0, 321844 55Chunk1ContextOffsets = 41015, 280829 56Chunk2ContextOffsets = 82030, 239814 57Chunk3ContextOffsets = 123045, 198799 58Chunk4ContextOffsets = 164060, 157784 59Chunk5ContextOffsets = 205075, 116769 60Chunk6ContextOffsets = 246090, 75754 61Chunk7ContextOffsets = 287105, 34739 62Chunk8ContextOffsets = 328120, 0, 0, 215577 63Chunk9ContextOffsets = 6176, 174562 64Chunk10ContextOffsets = 47191, 133547 65Chunk11ContextOffsets = 88206, 92532 66Chunk12ContextOffsets = 129221, 51517 67Chunk13ContextOffsets = 170236, 10502 68Chunk14ContextOffsets = 211251, 0, 0, 164324 69Chunk15ContextOffsets = 30413, 123309 70Chunk16ContextOffsets = 71428, 82294 71Chunk17ContextOffsets = 112443, 41279 72Chunk18ContextOffsets = 153458, 264 73Chunk19ContextOffsets = 194473, 0, 0, 164045 74Chunk20ContextOffsets = 40651, 123030 75Chunk21ContextOffsets = 81666, 82015 76Chunk22ContextOffsets = 122681, 41000 77Chunk23ContextOffsets = 163696, 0 78 79; This is read by x_ReadQueryBoundsPerChunk 80; Format: query start, query end, strand 81Chunk0Query0 = 0, 41115, 3 82Chunk1Query0 = 41015, 82130, 3 83Chunk2Query0 = 82030, 123145, 3 84Chunk3Query0 = 123045, 164160, 3 85Chunk4Query0 = 164060, 205175, 3 86Chunk5Query0 = 205075, 246190, 3 87Chunk6Query0 = 246090, 287205, 3 88Chunk7Query0 = 287105, 328220, 3 89Chunk8Query0 = 328120, 362959, 3 90 91 92Chunk8Query1 = 0, 6276, 3 93Chunk9Query1 = 6176, 47291, 3 94Chunk10Query1 = 47191, 88306, 3 95Chunk11Query1 = 88206, 129321, 3 96Chunk12Query1 = 129221, 170336, 3 97Chunk13Query1 = 170236, 211351, 3 98Chunk14Query1 = 211251, 221853, 3 99 100Chunk14Query2 = 0, 30513, 3 101Chunk15Query2 = 30413, 71528, 3 102Chunk16Query2 = 71428, 112543, 3 103Chunk17Query2 = 112443, 153558, 3 104Chunk18Query2 = 153458, 194573, 3 105Chunk19Query2 = 194473, 194837, 3 106 107Chunk19Query3 = 0, 40751, 3 108Chunk20Query3 = 40651, 81766, 3 109Chunk21Query3 = 81666, 122781, 3 110Chunk22Query3 = 122681, 163796, 3 111Chunk23Query3 = 163696, 204796, 3 112 113[QuerySplitter_BlastnMultiQueryMultiChunk_PlusStrand] 114NumChunks = 24 115Chunk0Queries = 0 116Chunk1Queries = 0 117Chunk2Queries = 0 118Chunk3Queries = 0 119Chunk4Queries = 0 120Chunk5Queries = 0 121Chunk6Queries = 0 122Chunk7Queries = 0 123Chunk8Queries = 0, 1 124Chunk9Queries = 1 125Chunk10Queries = 1 126Chunk11Queries = 1 127Chunk12Queries = 1 128Chunk13Queries = 1 129Chunk14Queries = 1, 2 130Chunk15Queries = 2 131Chunk16Queries = 2 132Chunk17Queries = 2 133Chunk18Queries = 2 134Chunk19Queries = 2, 3 135Chunk20Queries = 3 136Chunk21Queries = 3 137Chunk22Queries = 3 138Chunk23Queries = 3 139 140Chunk0Contexts = 0, -1 141Chunk1Contexts = 0, -1 142Chunk2Contexts = 0, -1 143Chunk3Contexts = 0, -1 144Chunk4Contexts = 0, -1 145Chunk5Contexts = 0, -1 146Chunk6Contexts = 0, -1 147Chunk7Contexts = 0, -1 148Chunk8Contexts = 0, -1, 2, -1 149Chunk9Contexts = 2, -1 150Chunk10Contexts = 2, -1 151Chunk11Contexts = 2, -1 152Chunk12Contexts = 2, -1 153Chunk13Contexts = 2, -1 154Chunk14Contexts = 2, -1, 4, -1 155Chunk15Contexts = 4, -1 156Chunk16Contexts = 4, -1 157Chunk17Contexts = 4, -1 158Chunk18Contexts = 4, -1 159Chunk19Contexts = 4, -1, 6, -1 160Chunk20Contexts = 6, -1 161Chunk21Contexts = 6, -1 162Chunk22Contexts = 6, -1 163Chunk23Contexts = 6, -1 164 165Chunk0ContextOffsets = 0, 2147483647 166Chunk1ContextOffsets = 41015, 2147483647 167Chunk2ContextOffsets = 82030, 2147483647 168Chunk3ContextOffsets = 123045, 2147483647 169Chunk4ContextOffsets = 164060, 2147483647 170Chunk5ContextOffsets = 205075, 2147483647 171Chunk6ContextOffsets = 246090, 2147483647 172Chunk7ContextOffsets = 287105, 2147483647 173Chunk8ContextOffsets = 328120, 2147483647, 0, 2147483647 174Chunk9ContextOffsets = 6176, 2147483647 175Chunk10ContextOffsets = 47191, 2147483647 176Chunk11ContextOffsets = 88206, 2147483647 177Chunk12ContextOffsets = 129221, 2147483647 178Chunk13ContextOffsets = 170236, 2147483647 179Chunk14ContextOffsets = 211251, 2147483647, 0, 2147483647 180Chunk15ContextOffsets = 30413, 2147483647 181Chunk16ContextOffsets = 71428, 2147483647 182Chunk17ContextOffsets = 112443, 2147483647 183Chunk18ContextOffsets = 153458, 2147483647 184Chunk19ContextOffsets = 194473, 2147483647, 0, 2147483647 185Chunk20ContextOffsets = 40651, 2147483647 186Chunk21ContextOffsets = 81666, 2147483647 187Chunk22ContextOffsets = 122681, 2147483647 188Chunk23ContextOffsets = 163696, 2147483647 189 190; This is read by x_ReadQueryBoundsPerChunk 191; Format: query start, query end, strand 192Chunk0Query0 = 0, 41115, 1 193Chunk1Query0 = 41015, 82130, 1 194Chunk2Query0 = 82030, 123145, 1 195Chunk3Query0 = 123045, 164160, 1 196Chunk4Query0 = 164060, 205175, 1 197Chunk5Query0 = 205075, 246190, 1 198Chunk6Query0 = 246090, 287205, 1 199Chunk7Query0 = 287105, 328220, 1 200Chunk8Query0 = 328120, 362959, 1 201 202Chunk8Query1 = 0, 6276, 1 203Chunk9Query1 = 6176, 47291, 1 204Chunk10Query1 = 47191, 88306, 1 205Chunk11Query1 = 88206, 129321, 1 206Chunk12Query1 = 129221, 170336, 1 207Chunk13Query1 = 170236, 211351, 1 208Chunk14Query1 = 211251, 221853, 1 209 210Chunk14Query2 = 0, 30513, 1 211Chunk15Query2 = 30413, 71528, 1 212Chunk16Query2 = 71428, 112543, 1 213Chunk17Query2 = 112443, 153558, 1 214Chunk18Query2 = 153458, 194573, 1 215Chunk19Query2 = 194473, 194837, 1 216 217Chunk19Query3 = 0, 40751, 1 218Chunk20Query3 = 40651, 81766, 1 219Chunk21Query3 = 81666, 122781, 1 220Chunk22Query3 = 122681, 163796, 1 221Chunk23Query3 = 163696, 204796, 1 222 223[QuerySplitter_BlastnMultiQueryMultiChunk_MinusStrand] 224NumChunks = 24 225Chunk0Queries = 0 226Chunk1Queries = 0 227Chunk2Queries = 0 228Chunk3Queries = 0 229Chunk4Queries = 0 230Chunk5Queries = 0 231Chunk6Queries = 0 232Chunk7Queries = 0 233Chunk8Queries = 0, 1 234Chunk9Queries = 1 235Chunk10Queries = 1 236Chunk11Queries = 1 237Chunk12Queries = 1 238Chunk13Queries = 1 239Chunk14Queries = 1, 2 240Chunk15Queries = 2 241Chunk16Queries = 2 242Chunk17Queries = 2 243Chunk18Queries = 2 244Chunk19Queries = 2, 3 245Chunk20Queries = 3 246Chunk21Queries = 3 247Chunk22Queries = 3 248Chunk23Queries = 3 249Chunk24Queries = 3 250 251Chunk0Contexts = -1, 1 252Chunk1Contexts = -1, 1 253Chunk2Contexts = -1, 1 254Chunk3Contexts = -1, 1 255Chunk4Contexts = -1, 1 256Chunk5Contexts = -1, 1 257Chunk6Contexts = -1, 1 258Chunk7Contexts = -1, 1 259Chunk8Contexts = -1, 1, -1, 3 260Chunk9Contexts = -1, 3 261Chunk10Contexts = -1, 3 262Chunk11Contexts = -1, 3 263Chunk12Contexts = -1, 3 264Chunk13Contexts = -1, 3 265Chunk14Contexts = -1, 3, -1, 5 266Chunk15Contexts = -1, 5 267Chunk16Contexts = -1, 5 268Chunk17Contexts = -1, 5 269Chunk18Contexts = -1, 5 270Chunk19Contexts = -1, 5, -1, 7 271Chunk20Contexts = -1, 7 272Chunk21Contexts = -1, 7 273Chunk22Contexts = -1, 7 274Chunk23Contexts = -1, 7 275Chunk24Contexts = -1, 7 276 277Chunk0ContextOffsets = 2147483647, 321844 278Chunk1ContextOffsets = 2147483647, 280829 279Chunk2ContextOffsets = 2147483647, 239814 280Chunk3ContextOffsets = 2147483647, 198799 281Chunk4ContextOffsets = 2147483647, 157784 282Chunk5ContextOffsets = 2147483647, 116769 283Chunk6ContextOffsets = 2147483647, 75754 284Chunk7ContextOffsets = 2147483647, 34739 285Chunk8ContextOffsets = 2147483647, 0, 2147483647, 215577 286Chunk9ContextOffsets = 2147483647, 174562 287Chunk10ContextOffsets = 2147483647, 133547 288Chunk11ContextOffsets = 2147483647, 92532 289Chunk12ContextOffsets = 2147483647, 51517 290Chunk13ContextOffsets = 2147483647, 10502 291Chunk14ContextOffsets = 2147483647, 0, 2147483647, 164324 292Chunk15ContextOffsets = 2147483647, 123309 293Chunk16ContextOffsets = 2147483647, 82294 294Chunk17ContextOffsets = 2147483647, 41279 295Chunk18ContextOffsets = 2147483647, 264 296Chunk19ContextOffsets = 2147483647, 0, 2147483647, 164045 297Chunk20ContextOffsets = 2147483647, 123030 298Chunk21ContextOffsets = 2147483647, 82015 299Chunk22ContextOffsets = 2147483647, 41000 300Chunk23ContextOffsets = 2147483647, 0 301 302; This is read by x_ReadQueryBoundsPerChunk 303; Format: query start, query end, strand 304Chunk0Query0 = 0, 41115, 2 305Chunk1Query0 = 41015, 82130, 2 306Chunk2Query0 = 82030, 123145, 2 307Chunk3Query0 = 123045, 164160, 2 308Chunk4Query0 = 164060, 205175, 2 309Chunk5Query0 = 205075, 246190, 2 310Chunk6Query0 = 246090, 287205, 2 311Chunk7Query0 = 287105, 328220, 2 312Chunk8Query0 = 328120, 362959, 2 313 314Chunk8Query1 = 0, 6276, 2 315Chunk9Query1 = 6176, 47291, 2 316Chunk10Query1 = 47191, 88306, 2 317Chunk11Query1 = 88206, 129321, 2 318Chunk12Query1 = 129221, 170336, 2 319Chunk13Query1 = 170236, 211351, 2 320Chunk14Query1 = 211251, 221853, 2 321 322Chunk14Query2 = 0, 30513, 2 323Chunk15Query2 = 30413, 71528, 2 324Chunk16Query2 = 71428, 112543, 2 325Chunk17Query2 = 112443, 153558, 2 326Chunk18Query2 = 153458, 194573, 2 327Chunk19Query2 = 194473, 194837, 2 328 329Chunk19Query3 = 0, 40751, 2 330Chunk20Query3 = 40651, 81766, 2 331Chunk21Query3 = 81666, 122781, 2 332Chunk22Query3 = 122681, 163796, 2 333Chunk23Query3 = 163696, 204796, 2 334 335[QuerySplitter_BlastnMultiQueryMultiChunk_MixedStrands] 336NumChunks = 24 337Chunk0Queries = 0 338Chunk1Queries = 0 339Chunk2Queries = 0 340Chunk3Queries = 0 341Chunk4Queries = 0 342Chunk5Queries = 0 343Chunk6Queries = 0 344Chunk7Queries = 0 345Chunk8Queries = 0, 1 346Chunk9Queries = 1 347Chunk10Queries = 1 348Chunk11Queries = 1 349Chunk12Queries = 1 350Chunk13Queries = 1 351Chunk14Queries = 1, 2 352Chunk15Queries = 2 353Chunk16Queries = 2 354Chunk17Queries = 2 355Chunk18Queries = 2 356Chunk19Queries = 2, 3 357Chunk20Queries = 3 358Chunk21Queries = 3 359Chunk22Queries = 3 360Chunk23Queries = 3 361 362Chunk0Contexts = 0, -1 363Chunk1Contexts = 0, -1 364Chunk2Contexts = 0, -1 365Chunk3Contexts = 0, -1 366Chunk4Contexts = 0, -1 367Chunk5Contexts = 0, -1 368Chunk6Contexts = 0, -1 369Chunk7Contexts = 0, -1 370Chunk8Contexts = 0, -1, 2, 3 371Chunk9Contexts = 2, 3 372Chunk10Contexts = 2, 3 373Chunk11Contexts = 2, 3 374Chunk12Contexts = 2, 3 375Chunk13Contexts = 2, 3 376Chunk14Contexts = 2, 3, -1, 5 377Chunk15Contexts = -1, 5 378Chunk16Contexts = -1, 5 379Chunk17Contexts = -1, 5 380Chunk18Contexts = -1, 5 381Chunk19Contexts = -1, 5, 6, 7 382Chunk20Contexts = 6, 7 383Chunk21Contexts = 6, 7 384Chunk22Contexts = 6, 7 385Chunk23Contexts = 6, 7 386 387Chunk0ContextOffsets = 0, 2147483647 388Chunk1ContextOffsets = 41015, 2147483647 389Chunk2ContextOffsets = 82030, 2147483647 390Chunk3ContextOffsets = 123045, 2147483647 391Chunk4ContextOffsets = 164060, 2147483647 392Chunk5ContextOffsets = 205075, 2147483647 393Chunk6ContextOffsets = 246090, 2147483647 394Chunk7ContextOffsets = 287105, 2147483647 395Chunk8ContextOffsets = 328120, 2147483647, 0, 215577 396Chunk9ContextOffsets = 6176, 174562 397Chunk10ContextOffsets = 47191, 133547 398Chunk11ContextOffsets = 88206, 92532 399Chunk12ContextOffsets = 129221, 51517 400Chunk13ContextOffsets = 170236, 10502 401Chunk14ContextOffsets = 211251, 0, 2147483647, 164324 402Chunk15ContextOffsets = 2147483647, 123309 403Chunk16ContextOffsets = 2147483647, 82294 404Chunk17ContextOffsets = 2147483647, 41279 405Chunk18ContextOffsets = 2147483647, 264 406Chunk19ContextOffsets = 2147483647, 0, 0, 164045 407Chunk20ContextOffsets = 40651, 123030 408Chunk21ContextOffsets = 81666, 82015 409Chunk22ContextOffsets = 122681, 41000 410Chunk23ContextOffsets = 163696, 0 411 412; This is read by x_ReadQueryBoundsPerChunk 413; Format: query start, query end, strand 414Chunk0Query0 = 0, 41115, 1 415Chunk1Query0 = 41015, 82130, 1 416Chunk2Query0 = 82030, 123145, 1 417Chunk3Query0 = 123045, 164160, 1 418Chunk4Query0 = 164060, 205175, 1 419Chunk5Query0 = 205075, 246190, 1 420Chunk6Query0 = 246090, 287205, 1 421Chunk7Query0 = 287105, 328220, 1 422Chunk8Query0 = 328120, 362959, 1 423 424 425Chunk8Query1 = 0, 6276, 3 426Chunk9Query1 = 6176, 47291, 3 427Chunk10Query1 = 47191, 88306, 3 428Chunk11Query1 = 88206, 129321, 3 429Chunk12Query1 = 129221, 170336, 3 430Chunk13Query1 = 170236, 211351, 3 431Chunk14Query1 = 211251, 221853, 3 432 433Chunk14Query2 = 0, 30513, 2 434Chunk15Query2 = 30413, 71528, 2 435Chunk16Query2 = 71428, 112543, 2 436Chunk17Query2 = 112443, 153558, 2 437Chunk18Query2 = 153458, 194573, 2 438Chunk19Query2 = 194473, 194837, 2 439 440Chunk19Query3 = 0, 40751, 3 441Chunk20Query3 = 40651, 81766, 3 442Chunk21Query3 = 81666, 122781, 3 443Chunk22Query3 = 122681, 163796, 3 444Chunk23Query3 = 163696, 204796, 3 445 446[QuerySplitter_NoSplit] 447NumChunks = 1 448ChunkSize = 624 449Chunk0Queries = 0 450 451[QuerySplitter_BlastnSingleQueryMultiChunk_BothStrands] 452NumChunks = 3 453Chunk0Queries = 0 454Chunk1Queries = 0 455Chunk2Queries = 0 456 457Chunk0Contexts = 0, 1 458Chunk1Contexts = 0, 1 459Chunk2Contexts = 0, 1 460 461Chunk0ContextOffsets = 0, 81497 462Chunk1ContextOffsets = 40750, 40747 463Chunk2ContextOffsets = 81500, 0 464 465; This is read by x_ReadQueryBoundsPerChunk 466; Format: query start, query end, strand 467Chunk0Query0 = 0, 40850, 3 468Chunk1Query0 = 40750, 81600, 3 469Chunk2Query0 = 81500, 122347, 3 470 471[QuerySplitter_BlastnSingleQueryMultiChunk_PlusStrand] 472NumChunks = 3 473Chunk0Queries = 0 474Chunk1Queries = 0 475Chunk2Queries = 0 476 477Chunk0Contexts = 0, -1 478Chunk1Contexts = 0, -1 479Chunk2Contexts = 0, -1 480 481Chunk0ContextOffsets = 0, 2147483647 482Chunk1ContextOffsets = 40750, 2147483647 483Chunk2ContextOffsets = 81500, 2147483647 484 485; This is read by x_ReadQueryBoundsPerChunk 486; Format: query start, query end, strand 487Chunk0Query0 = 0, 40850, 1 488Chunk1Query0 = 40750, 81600, 1 489Chunk2Query0 = 81500, 122347, 1 490 491[QuerySplitter_BlastnSingleQueryMultiChunk_MinusStrand] 492NumChunks = 3 493Chunk0Queries = 0 494Chunk1Queries = 0 495Chunk2Queries = 0 496 497Chunk0Contexts = -1, 1 498Chunk1Contexts = -1, 1 499Chunk2Contexts = -1, 1 500 501Chunk0ContextOffsets = 2147483647, 81497 502Chunk1ContextOffsets = 2147483647, 40747 503Chunk2ContextOffsets = 2147483647, 0 504 505; This is read by x_ReadQueryBoundsPerChunk 506; Format: query start, query end, strand 507Chunk0Query0 = 0, 40850, 2 508Chunk1Query0 = 40750, 81600, 2 509Chunk2Query0 = 81500, 122347, 2 510 511;[QuerySplitter_BlastxSingleQueryMultiChunk_BothStrands] 512;NumChunks = 26 513;ChunkSize = 5001 514;Chunk0Queries = 0 515;Chunk1Queries = 0 516;Chunk2Queries = 0 517;Chunk3Queries = 0 518;Chunk4Queries = 0 519;Chunk5Queries = 0 520;Chunk6Queries = 0 521;Chunk7Queries = 0 522;Chunk8Queries = 0 523;Chunk9Queries = 0 524;Chunk10Queries = 0 525;Chunk11Queries = 0 526;Chunk12Queries = 0 527;Chunk13Queries = 0 528;Chunk14Queries = 0 529;Chunk15Queries = 0 530;Chunk16Queries = 0 531;Chunk17Queries = 0 532;Chunk18Queries = 0 533;Chunk19Queries = 0 534;Chunk20Queries = 0 535;Chunk21Queries = 0 536;Chunk22Queries = 0 537;Chunk23Queries = 0 538;Chunk24Queries = 0 539;Chunk25Queries = 0 540; 541;Chunk0Contexts = 0, 1, 2, 3, 4, 5 542;Chunk1Contexts = 0, 1, 2, 3, 4, 5 543;Chunk2Contexts = 0, 1, 2, 3, 4, 5 544;Chunk3Contexts = 0, 1, 2, 3, 4, 5 545;Chunk4Contexts = 0, 1, 2, 3, 4, 5 546;Chunk5Contexts = 0, 1, 2, 3, 4, 5 547;Chunk6Contexts = 0, 1, 2, 3, 4, 5 548;Chunk7Contexts = 0, 1, 2, 3, 4, 5 549;Chunk8Contexts = 0, 1, 2, 3, 4, 5 550;Chunk9Contexts = 0, 1, 2, 3, 4, 5 551;Chunk10Contexts = 0, 1, 2, 3, 4, 5 552;Chunk11Contexts = 0, 1, 2, 3, 4, 5 553;Chunk12Contexts = 0, 1, 2, 3, 4, 5 554;Chunk13Contexts = 0, 1, 2, 3, 4, 5 555;Chunk14Contexts = 0, 1, 2, 3, 4, 5 556;Chunk15Contexts = 0, 1, 2, 3, 4, 5 557;Chunk16Contexts = 0, 1, 2, 3, 4, 5 558;Chunk17Contexts = 0, 1, 2, 3, 4, 5 559;Chunk18Contexts = 0, 1, 2, 3, 4, 5 560;Chunk19Contexts = 0, 1, 2, 3, 4, 5 561;Chunk20Contexts = 0, 1, 2, 3, 4, 5 562;Chunk21Contexts = 0, 1, 2, 3, 4, 5 563;Chunk22Contexts = 0, 1, 2, 3, 4, 5 564;Chunk23Contexts = 0, 1, 2, 3, 4, 5 565;Chunk24Contexts = 0, 1, 2, 3, 4, 5 566;Chunk25Contexts = 0, 1, 2, 3, 4, 5 567; 568;Chunk0ContextOffsets = 0, 0, 0, 0, 0, 0 569;Chunk1ContextOffsets = 0, 1, 2, 3, 4, 5 570;Chunk2ContextOffsets = 0, 1, 2, 3, 4, 5 571;Chunk3ContextOffsets = 0, 1, 2, 3, 4, 5 572;Chunk4ContextOffsets = 0, 1, 2, 3, 4, 5 573;Chunk5ContextOffsets = 0, 1, 2, 3, 4, 5 574;Chunk6ContextOffsets = 0, 1, 2, 3, 4, 5 575;Chunk7ContextOffsets = 0, 1, 2, 3, 4, 5 576;Chunk8ContextOffsets = 0, 1, 2, 3, 4, 5 577;Chunk9ContextOffsets = 0, 1, 2, 3, 4, 5 578;Chunk10ContextOffsets = 0, 1, 2, 3, 4, 5 579;Chunk11ContextOffsets = 0, 1, 2, 3, 4, 5 580;Chunk12ContextOffsets = 0, 1, 2, 3, 4, 5 581;Chunk13ContextOffsets = 0, 1, 2, 3, 4, 5 582;Chunk14ContextOffsets = 0, 1, 2, 3, 4, 5 583;Chunk15ContextOffsets = 0, 1, 2, 3, 4, 5 584;Chunk16ContextOffsets = 0, 1, 2, 3, 4, 5 585;Chunk17ContextOffsets = 0, 1, 2, 3, 4, 5 586;Chunk18ContextOffsets = 0, 1, 2, 3, 4, 5 587;Chunk19ContextOffsets = 0, 1, 2, 3, 4, 5 588;Chunk20ContextOffsets = 0, 1, 2, 3, 4, 5 589;Chunk21ContextOffsets = 0, 1, 2, 3, 4, 5 590;Chunk22ContextOffsets = 0, 1, 2, 3, 4, 5 591;Chunk23ContextOffsets = 0, 1, 2, 3, 4, 5 592;Chunk24ContextOffsets = 0, 1, 2, 3, 4, 5 593;Chunk25ContextOffsets = 0, 1, 2, 3, 4, 5 594; 595;; This is read by x_ReadQueryBoundsPerChunk 596;; Format: query start, query end, strand 597;Chunk0Query0 = 0, 5001, 3 598;Chunk1Query0 = 4901, 9902, 3 599;Chunk2Query0 = 9802, 14803, 3 600;Chunk3Query0 = 14703, 19704, 3 601;Chunk4Query0 = 19604, 24605, 3 602;Chunk5Query0 = 24505, 29506, 3 603;Chunk6Query0 = 29406, 34407, 3 604;Chunk7Query0 = 34307, 39308, 3 605;Chunk8Query0 = 39208, 44209, 3 606;Chunk9Query0 = 44109, 49110, 3 607;Chunk10Query0 = 49010, 54011, 3 608;Chunk11Query0 = 53911, 58912, 3 609;Chunk12Query0 = 58812, 63813, 3 610;Chunk13Query0 = 63713, 68714, 3 611;Chunk14Query0 = 68614, 73615, 3 612;Chunk15Query0 = 73515, 78516, 3 613;Chunk16Query0 = 78416, 83417, 3 614;Chunk17Query0 = 83317, 88318, 3 615;Chunk18Query0 = 88218, 93219, 3 616;Chunk19Query0 = 93119, 98120, 3 617;Chunk20Query0 = 98020, 103021, 3 618;Chunk21Query0 = 102921, 107922, 3 619;Chunk22Query0 = 107822, 112823, 3 620;Chunk23Query0 = 112723, 117724, 3 621;Chunk24Query0 = 117624, 122347, 3 622;Chunk25Query0 = 117624, 122347, 3 623; 624;[QuerySplitter_BlastxSingleQueryMultiChunk_PlusStrand] 625;NumChunks = 26 626;ChunkSize = 5001 627;Chunk0Queries = 0 628;Chunk1Queries = 0 629;Chunk2Queries = 0 630;Chunk3Queries = 0 631;Chunk4Queries = 0 632;Chunk5Queries = 0 633;Chunk6Queries = 0 634;Chunk7Queries = 0 635;Chunk8Queries = 0 636;Chunk9Queries = 0 637;Chunk10Queries = 0 638;Chunk11Queries = 0 639;Chunk12Queries = 0 640;Chunk13Queries = 0 641;Chunk14Queries = 0 642;Chunk15Queries = 0 643;Chunk16Queries = 0 644;Chunk17Queries = 0 645;Chunk18Queries = 0 646;Chunk19Queries = 0 647;Chunk20Queries = 0 648;Chunk21Queries = 0 649;Chunk22Queries = 0 650;Chunk23Queries = 0 651;Chunk24Queries = 0 652;Chunk25Queries = 0 653; 654;Chunk0Contexts = 0, 1, 2 655;Chunk1Contexts = 0, 1, 2 656;Chunk2Contexts = 0, 1, 2 657;Chunk3Contexts = 0, 1, 2 658;Chunk4Contexts = 0, 1, 2 659;Chunk5Contexts = 0, 1, 2 660;Chunk6Contexts = 0, 1, 2 661;Chunk7Contexts = 0, 1, 2 662;Chunk8Contexts = 0, 1, 2 663;Chunk9Contexts = 0, 1, 2 664;Chunk10Contexts = 0, 1, 2 665;Chunk11Contexts = 0, 1, 2 666;Chunk12Contexts = 0, 1, 2 667;Chunk13Contexts = 0, 1, 2 668;Chunk14Contexts = 0, 1, 2 669;Chunk15Contexts = 0, 1, 2 670;Chunk16Contexts = 0, 1, 2 671;Chunk17Contexts = 0, 1, 2 672;Chunk18Contexts = 0, 1, 2 673;Chunk19Contexts = 0, 1, 2 674;Chunk20Contexts = 0, 1, 2 675;Chunk21Contexts = 0, 1, 2 676;Chunk22Contexts = 0, 1, 2 677;Chunk23Contexts = 0, 1, 2 678;Chunk24Contexts = 0, 1, 2 679;Chunk25Contexts = 0, 1, 2 680; 681;; This is read by x_ReadQueryBoundsPerChunk 682;; Format: query start, query end, strand 683;Chunk0Query0 = 0, 5001, 1 684;Chunk1Query0 = 4901, 9902, 1 685;Chunk2Query0 = 9802, 14803, 1 686;Chunk3Query0 = 14703, 19704, 1 687;Chunk4Query0 = 19604, 24605, 1 688;Chunk5Query0 = 24505, 29506, 1 689;Chunk6Query0 = 29406, 34407, 1 690;Chunk7Query0 = 34307, 39308, 1 691;Chunk8Query0 = 39208, 44209, 1 692;Chunk9Query0 = 44109, 49110, 1 693;Chunk10Query0 = 49010, 54011, 1 694;Chunk11Query0 = 53911, 58912, 1 695;Chunk12Query0 = 58812, 63813, 1 696;Chunk13Query0 = 63713, 68714, 1 697;Chunk14Query0 = 68614, 73615, 1 698;Chunk15Query0 = 73515, 78516, 1 699;Chunk16Query0 = 78416, 83417, 1 700;Chunk17Query0 = 83317, 88318, 1 701;Chunk18Query0 = 88218, 93219, 1 702;Chunk19Query0 = 93119, 98120, 1 703;Chunk20Query0 = 98020, 103021, 1 704;Chunk21Query0 = 102921, 107922, 1 705;Chunk22Query0 = 107822, 112823, 1 706;Chunk23Query0 = 112723, 117724, 1 707;Chunk24Query0 = 117624, 122347, 1 708;Chunk25Query0 = 117624, 122347, 1 709; 710;[QuerySplitter_BlastxSingleQueryMultiChunk_MinusStrand] 711;NumChunks = 26 712;ChunkSize = 5001 713;Chunk0Queries = 0 714;Chunk1Queries = 0 715;Chunk2Queries = 0 716;Chunk3Queries = 0 717;Chunk4Queries = 0 718;Chunk5Queries = 0 719;Chunk6Queries = 0 720;Chunk7Queries = 0 721;Chunk8Queries = 0 722;Chunk9Queries = 0 723;Chunk10Queries = 0 724;Chunk11Queries = 0 725;Chunk12Queries = 0 726;Chunk13Queries = 0 727;Chunk14Queries = 0 728;Chunk15Queries = 0 729;Chunk16Queries = 0 730;Chunk17Queries = 0 731;Chunk18Queries = 0 732;Chunk19Queries = 0 733;Chunk20Queries = 0 734;Chunk21Queries = 0 735;Chunk22Queries = 0 736;Chunk23Queries = 0 737;Chunk24Queries = 0 738;Chunk25Queries = 0 739; 740;Chunk0Contexts = 3, 4, 5 741;Chunk1Contexts = 3, 4, 5 742;Chunk2Contexts = 3, 4, 5 743;Chunk3Contexts = 3, 4, 5 744;Chunk4Contexts = 3, 4, 5 745;Chunk5Contexts = 3, 4, 5 746;Chunk6Contexts = 3, 4, 5 747;Chunk7Contexts = 3, 4, 5 748;Chunk8Contexts = 3, 4, 5 749;Chunk9Contexts = 3, 4, 5 750;Chunk10Contexts = 3, 4, 5 751;Chunk11Contexts = 3, 4, 5 752;Chunk12Contexts = 3, 4, 5 753;Chunk13Contexts = 3, 4, 5 754;Chunk14Contexts = 3, 4, 5 755;Chunk15Contexts = 3, 4, 5 756;Chunk16Contexts = 3, 4, 5 757;Chunk17Contexts = 3, 4, 5 758;Chunk18Contexts = 3, 4, 5 759;Chunk19Contexts = 3, 4, 5 760;Chunk20Contexts = 3, 4, 5 761;Chunk21Contexts = 3, 4, 5 762;Chunk22Contexts = 3, 4, 5 763;Chunk23Contexts = 3, 4, 5 764;Chunk24Contexts = 3, 4, 5 765;Chunk25Contexts = 3, 4, 5 766; 767;; This is read by x_ReadQueryBoundsPerChunk 768;; Format: query start, query end, strand 769;Chunk0Query0 = 0, 5001, 2 770;Chunk1Query0 = 4901, 9902, 2 771;Chunk2Query0 = 9802, 14803, 2 772;Chunk3Query0 = 14703, 19704, 2 773;Chunk4Query0 = 19604, 24605, 2 774;Chunk5Query0 = 24505, 29506, 2 775;Chunk6Query0 = 29406, 34407, 2 776;Chunk7Query0 = 34307, 39308, 2 777;Chunk8Query0 = 39208, 44209, 2 778;Chunk9Query0 = 44109, 49110, 2 779;Chunk10Query0 = 49010, 54011, 2 780;Chunk11Query0 = 53911, 58912, 2 781;Chunk12Query0 = 58812, 63813, 2 782;Chunk13Query0 = 63713, 68714, 2 783;Chunk14Query0 = 68614, 73615, 2 784;Chunk15Query0 = 73515, 78516, 2 785;Chunk16Query0 = 78416, 83417, 2 786;Chunk17Query0 = 83317, 88318, 2 787;Chunk18Query0 = 88218, 93219, 2 788;Chunk19Query0 = 93119, 98120, 2 789;Chunk20Query0 = 98020, 103021, 2 790;Chunk21Query0 = 102921, 107922, 2 791;Chunk22Query0 = 107822, 112823, 2 792;Chunk23Query0 = 112723, 117724, 2 793;Chunk24Query0 = 117624, 122347, 2 794;Chunk25Query0 = 117624, 122347, 2 795; 796; /********* This functionality has not been implemented **************/ 797;[QuerySplitter_BlastxMultiQueryMultiChunk_MixedStrands] 798;NumChunks = 5 799;ChunkSize = 5001 800;Chunk0Queries = 0 801;Chunk1Queries = 0, 1 802;Chunk2Queries = 1, 2 803;Chunk3Queries = 2, 3 804;Chunk4Queries = 3 805;Chunk0Contexts = 0, 1, 2, 3, 4, 5 806;Chunk1Contexts = 0, 1, 2, 3, 4, 5, 6, 7, 8 807;Chunk2Contexts = 0, 1, 2, 6, 7, 8, 9, 10, 11 808;Chunk3Contexts = 0, 1, 2, 3, 4, 5, 9, 10, 11 809;Chunk4Contexts = 3, 4, 5 810; 811;; This is read by x_ReadQueryBoundsPerChunk 812;; Format: query start, query end, strand 813;Chunk0Query0 = 0, 5001, 3 814; 815;Chunk1Query0 = 4901, 5567, 3 816;Chunk1Query1 = 0, 4335, 1 817; 818;Chunk2Query1 = 4235, 5987, 1 819;Chunk2Query2 = 0, 3249, 3 820; 821;Chunk3Query2 = 3149, 5531, 3 822;Chunk3Query3 = 0, 2382, 2 823; 824;Chunk4Query3 = 2282, 5046, 2 825; 826;[QuerySplitter_BlastxMultiQueryMultiChunk_BothStrands] 827;NumChunks = 5 828;ChunkSize = 5001 829;Chunk0Queries = 0 830;Chunk1Queries = 0, 1 831;Chunk2Queries = 1, 2 832;Chunk3Queries = 2, 3 833;Chunk4Queries = 3 834;Chunk0Contexts = 0, 1, 2, 3, 4, 5 835;Chunk1Contexts = 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 836;Chunk2Contexts = 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 837;Chunk3Contexts = 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 838;Chunk4Contexts = 0, 1, 2, 3, 4, 5 839; 840;; This is read by x_ReadQueryBoundsPerChunk 841;; Format: query start, query end, strand 842;Chunk0Query0 = 0, 5001, 3 843; 844;Chunk1Query0 = 4901, 5567, 3 845;Chunk1Query1 = 0, 4335, 3 846; 847;Chunk2Query1 = 4235, 5987, 3 848;Chunk2Query2 = 0, 3249, 3 849; 850;Chunk3Query2 = 3149, 5531, 3 851;Chunk3Query3 = 0, 2382, 3 852; 853;Chunk4Query3 = 2282, 5046, 3 854; 855;[QuerySplitter_BlastxMultiQueryMultiChunk_PlusStrand] 856;NumChunks = 5 857;ChunkSize = 5001 858;Chunk0Queries = 0 859;Chunk1Queries = 0, 1 860;Chunk2Queries = 1, 2 861;Chunk3Queries = 2, 3 862;Chunk4Queries = 3 863;Chunk0Contexts = 0, 1, 2 864;Chunk1Contexts = 0, 1, 2, 6, 7, 8 865;Chunk2Contexts = 0, 1, 2, 6, 7, 8 866;Chunk3Contexts = 0, 1, 2, 6, 7, 8 867;Chunk4Contexts = 0, 1, 2 868; 869;; This is read by x_ReadQueryBoundsPerChunk 870;; Format: query start, query end, strand 871;Chunk0Query0 = 0, 5001, 1 872; 873;Chunk1Query0 = 4901, 5567, 1 874;Chunk1Query1 = 0, 4335, 1 875; 876;Chunk2Query1 = 4235, 5987, 1 877;Chunk2Query2 = 0, 3249, 1 878; 879;Chunk3Query2 = 3149, 5531, 1 880;Chunk3Query3 = 0, 2382, 1 881; 882;Chunk4Query3 = 2282, 5046, 1 883; 884;[QuerySplitter_BlastxMultiQueryMultiChunk_MinusStrand] 885;NumChunks = 5 886;ChunkSize = 5001 887;Chunk0Queries = 0 888;Chunk1Queries = 0, 1 889;Chunk2Queries = 1, 2 890;Chunk3Queries = 2, 3 891;Chunk4Queries = 3 892;Chunk0Contexts = 3, 4, 5 893;Chunk1Contexts = 3, 4, 5, 9, 10, 11 894;Chunk2Contexts = 3, 4, 5, 9, 10, 11 895;Chunk3Contexts = 3, 4, 5, 9, 10, 11 896;Chunk4Contexts = 3, 4, 5 897; 898;; This is read by x_ReadQueryBoundsPerChunk 899;; Format: query start, query end, strand 900;Chunk0Query0 = 0, 5001, 2 901; 902;Chunk1Query0 = 4901, 5567, 2 903;Chunk1Query1 = 0, 4335, 2 904; 905;Chunk2Query1 = 4235, 5987, 2 906;Chunk2Query2 = 0, 3249, 2 907; 908;Chunk3Query2 = 3149, 5531, 2 909;Chunk3Query3 = 0, 2382, 2 910; 911;Chunk4Query3 = 2282, 5046, 2 912 913[QuerySplitter_BlastpSingleQueryMultiChunk] 914NumChunks = 3 915ChunkSize = 11208 916Chunk0Queries = 0 917Chunk1Queries = 0 918Chunk2Queries = 0 919 920; This is read by x_ReadQueryBoundsPerChunk 921; Format: query start, query end, strand 922Chunk0Query0 = 0, 11208, 0 923Chunk1Query0 = 11108, 22316, 0 924Chunk2Query0 = 22216, 33423, 0 925 926Chunk0Contexts = 0 927Chunk1Contexts = 0 928Chunk2Contexts = 0 929 930Chunk0ContextOffsets = 0 931Chunk1ContextOffsets = 11108 932Chunk2ContextOffsets = 22216 933 934; This is read by x_ReadSplitQueryInfoForTest. For format description see 935; the comment of this method 936BlastQueryInfo0.first_context = 0 937BlastQueryInfo0.last_context = 0 938BlastQueryInfo0.num_queries = 1 939BlastQueryInfo0.context0.query_offset = 0 940BlastQueryInfo0.context0.query_length = 10000 941BlastQueryInfo0.context0.eff_searchsp = 0 942BlastQueryInfo0.context0.length_adjustment = 0 943BlastQueryInfo0.context0.query_index = 0 944BlastQueryInfo0.context0.frame = 0 945BlastQueryInfo0.context0.is_valid = TRUE 946 947BlastQueryInfo1.first_context = 0 948BlastQueryInfo1.last_context = 0 949BlastQueryInfo1.num_queries = 1 950BlastQueryInfo1.context0.query_offset = 0 951BlastQueryInfo1.context0.query_length = 10000 952BlastQueryInfo1.context0.eff_searchsp = 0 953BlastQueryInfo1.context0.length_adjustment = 0 954BlastQueryInfo1.context0.query_index = 0 955BlastQueryInfo1.context0.frame = 0 956BlastQueryInfo1.context0.is_valid = TRUE 957 958BlastQueryInfo2.first_context = 0 959BlastQueryInfo2.last_context = 0 960BlastQueryInfo2.num_queries = 1 961BlastQueryInfo2.context0.query_offset = 0 962BlastQueryInfo2.context0.query_length = 10000 963BlastQueryInfo2.context0.eff_searchsp = 0 964BlastQueryInfo2.context0.length_adjustment = 0 965BlastQueryInfo2.context0.query_index = 0 966BlastQueryInfo2.context0.frame = 0 967BlastQueryInfo2.context0.is_valid = TRUE 968 969BlastQueryInfo3.first_context = 0 970BlastQueryInfo3.last_context = 0 971BlastQueryInfo3.num_queries = 1 972BlastQueryInfo3.context0.query_offset = 0 973BlastQueryInfo3.context0.query_length = 3723 974BlastQueryInfo3.context0.eff_searchsp = 0 975BlastQueryInfo3.context0.length_adjustment = 0 976BlastQueryInfo3.context0.query_index = 0 977BlastQueryInfo3.context0.frame = 0 978BlastQueryInfo3.context0.is_valid = TRUE 979 980[QuerySplitter_BlastpMultiQueryMultiChunk] 981NumChunks = 2 982ChunkSize = 12361 983Chunk0Queries = 0, 1 984Chunk1Queries = 1, 2, 3 985 986Chunk0ContextOffsets = 0, 0 987Chunk1ContextOffsets = 5378, 0, 0 988 989; This is read by x_ReadQueryBoundsPerChunk 990; Format: query start, query end, strand 991Chunk0Query0 = 0, 6883, 0 992 993Chunk0Query1 = 0, 5478, 0 994Chunk1Query1 = 5378, 6669, 0 995 996Chunk1Query2 = 0, 6061, 0 997 998Chunk1Query3 = 0, 5007, 0 999 1000Chunk0Contexts = 0, 1 1001Chunk1Contexts = 1, 2, 3 1002 1003[TestCContextTranslator_BlastnMultiQuery_BothStrands] 1004NumChunks = 9 1005Chunk0StartingChunks = 0, 0 1006Chunk1StartingChunks = 0, 0 1007Chunk2StartingChunks = 0, 0, 2, 2, 2, 2 1008Chunk3StartingChunks = 2, 2, 2, 2 1009Chunk4StartingChunks = 2, 2 1010Chunk5StartingChunks = 2, 2 1011Chunk6StartingChunks = 2, 2 1012Chunk7StartingChunks = 2, 2 1013Chunk8StartingChunks = 2, 2 1014Chunk9StartingChunks = 2, 2 1015 1016Chunk0AbsoluteContexts = 0, 1 1017Chunk1AbsoluteContexts = 0, 1 1018Chunk2AbsoluteContexts = 0, 1, 2, 3, 4, 5 1019Chunk3AbsoluteContexts = 2, 3, 4, 5 1020Chunk4AbsoluteContexts = 4, 5 1021Chunk5AbsoluteContexts = 4, 5 1022Chunk6AbsoluteContexts = 4, 5 1023Chunk7AbsoluteContexts = 4, 5 1024Chunk8AbsoluteContexts = 4, 5 1025Chunk9AbsoluteContexts = 4, 5 1026 1027Chunk0ContextOffsets = 0, 488 1028Chunk1ContextOffsets = 412, 76 1029Chunk2ContextOffsets = 824, 0, 0, 0, 0, 2465 1030Chunk3ContextOffsets = 236, 0, 0, 2053 1031Chunk4ContextOffsets = 398, 1641 1032Chunk5ContextOffsets = 810, 1229 1033Chunk6ContextOffsets = 1222, 817 1034Chunk7ContextOffsets = 1634, 405 1035Chunk8ContextOffsets = 2046, 0 1036 1037[TestCContextTranslator_BlastnMultiQuery_PlusStrand] 1038NumChunks = 9 1039Chunk0StartingChunks = 0, -1 1040Chunk1StartingChunks = 0, -1 1041Chunk2StartingChunks = 0, -1, 2, -1, 2, -1 1042Chunk3StartingChunks = 2, -1, 2, -1 1043Chunk4StartingChunks = 2, -1 1044Chunk5StartingChunks = 2, -1 1045Chunk6StartingChunks = 2, -1 1046Chunk7StartingChunks = 2, -1 1047Chunk8StartingChunks = 2, -1 1048Chunk9StartingChunks = 2, -1 1049 1050Chunk0AbsoluteContexts = 0, -1 1051Chunk1AbsoluteContexts = 0, -1 1052Chunk2AbsoluteContexts = 0, -1, 2, -1, 4, -1 1053Chunk3AbsoluteContexts = 2, -1, 4, -1 1054Chunk4AbsoluteContexts = 4, -1 1055Chunk5AbsoluteContexts = 4, -1 1056Chunk6AbsoluteContexts = 4, -1 1057Chunk7AbsoluteContexts = 4, -1 1058Chunk8AbsoluteContexts = 4, -1 1059Chunk9AbsoluteContexts = 4, -1 1060 1061Chunk0ContextOffsets = 0, 2147483647 1062Chunk1ContextOffsets = 412, 2147483647 1063Chunk2ContextOffsets = 824, 2147483647, 0, 2147483647, 0, 2147483647 1064Chunk3ContextOffsets = 236, 2147483647, 0, 2147483647 1065Chunk4ContextOffsets = 398, 2147483647 1066Chunk5ContextOffsets = 810, 2147483647 1067Chunk6ContextOffsets = 1222, 2147483647 1068Chunk7ContextOffsets = 1634, 2147483647 1069Chunk8ContextOffsets = 2046, 2147483647 1070Chunk9ContextOffsets = 2350, 2147483647 1071 1072[TestCContextTranslator_BlastnMultiQuery_MinusStrand] 1073NumChunks = 9 1074Chunk0StartingChunks = -1, 0 1075Chunk1StartingChunks = -1, 0 1076Chunk2StartingChunks = -1, 0, -1, 2, -1, 2 1077Chunk3StartingChunks = -1, 2, -1, 2 1078Chunk4StartingChunks = -1, 2 1079Chunk5StartingChunks = -1, 2 1080Chunk6StartingChunks = -1, 2 1081Chunk7StartingChunks = -1, 2 1082Chunk8StartingChunks = -1, 2 1083Chunk9StartingChunks = -1, 2 1084 1085Chunk0AbsoluteContexts = -1, 1 1086Chunk1AbsoluteContexts = -1, 1 1087Chunk2AbsoluteContexts = -1, 1, -1, 3, -1, 5 1088Chunk3AbsoluteContexts = -1, 3, -1, 5 1089Chunk4AbsoluteContexts = -1, 5 1090Chunk5AbsoluteContexts = -1, 5 1091Chunk6AbsoluteContexts = -1, 5 1092Chunk7AbsoluteContexts = -1, 5 1093Chunk8AbsoluteContexts = -1, 5 1094Chunk9AbsoluteContexts = -1, 5 1095 1096Chunk0ContextOffsets = 2147483647, 488 1097Chunk1ContextOffsets = 2147483647, 76 1098Chunk2ContextOffsets = 2147483647, 0, 2147483647, 0, 2147483647, 2465 1099Chunk3ContextOffsets = 2147483647, 0, 2147483647, 2053 1100Chunk4ContextOffsets = 2147483647, 1641 1101Chunk5ContextOffsets = 2147483647, 1229 1102Chunk6ContextOffsets = 2147483647, 817 1103Chunk7ContextOffsets = 2147483647, 405 1104Chunk8ContextOffsets = 2147483647, 0 1105Chunk9ContextOffsets = 2147483647, 0 1106 1107[TestCContextTranslator_BlastxSingleQuery_BothStrands_0] 1108NumChunks = 3 1109Chunk0StartingChunks = 0, 0, 0, 0, 0, 0 1110Chunk1StartingChunks = 0, 0, 0, 0, 0, 0 1111Chunk2StartingChunks = 0, 0, 0, 0, 0, 0 1112 1113Chunk0AbsoluteContexts = 0, 1, 2, 3, 4, 5 1114Chunk1AbsoluteContexts = 0, 1, 2, 3, 4, 5 1115Chunk2AbsoluteContexts = 0, 1, 2, 3, 4, 5 1116 1117Chunk0ContextOffsets = 0, 0, 0, 6, 6, 6 1118Chunk1ContextOffsets = 3, 3, 3, 3, 3, 3 1119Chunk2ContextOffsets = 6, 6, 6, 0, 0, 0 1120 1121[TestCContextTranslator_BlastxSingleQuery_BothStrands_1] 1122NumChunks = 3 1123Chunk0StartingChunks = 0, 0, 0, 0, 0, 0 1124Chunk1StartingChunks = 0, 0, 0, 0, 0, 0 1125Chunk2StartingChunks = 0, 0, 0, 0, 0, 0 1126 1127Chunk0AbsoluteContexts = 0, 1, 2, 4, 5, 3 1128Chunk1AbsoluteContexts = 0, 1, 2, 4, 5, 3 1129Chunk2AbsoluteContexts = 0, 1, 2, 3, 4, 5 1130 1131Chunk0ContextOffsets = 0, 0, 0, 6, 6, 7 1132Chunk1ContextOffsets = 3, 3, 3, 3, 3, 4 1133Chunk2ContextOffsets = 6, 6, 6, 0, 0, 0 1134 1135[TestCContextTranslator_BlastxSingleQuery_BothStrands_2] 1136NumChunks = 3 1137Chunk0StartingChunks = 0, 0, 0, 0, 0, 0 1138Chunk1StartingChunks = 0, 0, 0, 0, 0, 0 1139Chunk2StartingChunks = 0, 0, 0, 0, 0, 0 1140 1141Chunk0AbsoluteContexts = 0, 1, 2, 5, 3, 4 1142Chunk1AbsoluteContexts = 0, 1, 2, 5, 3, 4 1143Chunk2AbsoluteContexts = 0, 1, 2, 3, 4, 5 1144 1145Chunk0ContextOffsets = 0, 0, 0, 6, 7, 7 1146Chunk1ContextOffsets = 3, 3, 3, 3, 4, 4 1147Chunk2ContextOffsets = 6, 6, 6, 0, 0, 0 1148 1149; /********* This functionality has not been implemented **************/ 1150; [TestCContextTranslator_BlastxMultiQuery_BothStrands] 1151; NumChunks = 10 1152; Chunk0StartingChunks = 0, 0, 0, 0, 0, 0 1153; Chunk1StartingChunks = 0, 0, 0, 0, 0, 0 1154; Chunk2StartingChunks = 0, 0, 0, 0, 0, 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 1155; Chunk3StartingChunks = 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 1156; Chunk4StartingChunks = 2, 2, 2, 2, 2, 2 1157; Chunk5StartingChunks = 2, 2, 2, 2, 2, 2 1158; Chunk6StartingChunks = 2, 2, 2, 2, 2, 2 1159; Chunk7StartingChunks = 2, 2, 2, 2, 2, 2 1160; Chunk8StartingChunks = 2, 2, 2, 2, 2, 2 1161; Chunk9StartingChunks = 2, 2, 2, 2, 2, 2 1162; 1163; Chunk0AbsoluteContexts = 0, 1, 2, 4, 5, 3 1164; Chunk1AbsoluteContexts = 0, 1, 2, 4, 5, 3 1165; Chunk2AbsoluteContexts = 0, 1, 2, 4, 5, 3, 6, 7, 8, 10, 11, 9, 12, 13, 14, 16, 17, 15 1166; Chunk3AbsoluteContexts = 6, 7, 8, 10, 11, 9, 12, 13, 14, 16, 17, 15 1167; Chunk4AbsoluteContexts = 12, 13, 14, 16, 17, 15 1168; Chunk5AbsoluteContexts = 12, 13, 14, 16, 17, 15 1169; Chunk6AbsoluteContexts = 12, 13, 14, 16, 17, 15 1170; Chunk7AbsoluteContexts = 12, 13, 14, 16, 17, 15 1171; Chunk8AbsoluteContexts = 12, 13, 14, 16, 17, 15 1172; Chunk9AbsoluteContexts = 12, 13, 14, 16, 17, 15 1173; 1174; Chunk0ContextOffsets = 0, 0, 0, 166, 166, 167 1175; Chunk1ContextOffsets = 134, 134, 134, 32, 32, 33 1176; Chunk2ContextOffsets = 1177; Chunk3ContextOffsets = 1178; Chunk4ContextOffsets = 1179; Chunk5ContextOffsets = 1180; Chunk6ContextOffsets = 1181; Chunk7ContextOffsets = 1182; Chunk8ContextOffsets = 1183; Chunk9ContextOffsets = 1184; 1185; [TestCContextTranslator_BlastxMultiQuery_PlusStrand] 1186; NumChunks = 10 1187; Chunk0StartingChunks = 0, 0, 0, -1, -1, -1 1188; Chunk1StartingChunks = 0, 0, 0, -1, -1, -1 1189; Chunk2StartingChunks = 0, 0, 0, -1, -1, -1, 2, 2, 2, -1, -1, -1, 2, 2, 2, -1, -1, -1 1190; Chunk3StartingChunks = 2, 2, 2, -1, -1, -1, 2, 2, 2, -1, -1, -1 1191; Chunk4StartingChunks = 2, 2, 2, -1, -1, -1 1192; Chunk5StartingChunks = 2, 2, 2, -1, -1, -1 1193; Chunk6StartingChunks = 2, 2, 2, -1, -1, -1 1194; Chunk7StartingChunks = 2, 2, 2, -1, -1, -1 1195; Chunk8StartingChunks = 2, 2, 2, -1, -1, -1 1196; Chunk9StartingChunks = 2, 2, 2, -1, -1, -1 1197; 1198; Chunk0AbsoluteContexts = 0, 1, 2, -1, -1, -1 1199; Chunk1AbsoluteContexts = 0, 1, 2, -1, -1, -1 1200; Chunk2AbsoluteContexts = 0, 1, 2, -1, -1, -1, 6, 7, 8, -1, -1, -1, 12, 13, 14, -1, -1, -1 1201; Chunk3AbsoluteContexts = 6, 7, 8, -1, -1, -1, 12, 13, 14, -1, -1, -1 1202; Chunk4AbsoluteContexts = 12, 13, 14, -1, -1, -1 1203; Chunk5AbsoluteContexts = 12, 13, 14, -1, -1, -1 1204; Chunk6AbsoluteContexts = 12, 13, 14, -1, -1, -1 1205; Chunk7AbsoluteContexts = 12, 13, 14, -1, -1, -1 1206; Chunk8AbsoluteContexts = 12, 13, 14, -1, -1, -1 1207; Chunk9AbsoluteContexts = 12, 13, 14, -1, -1, -1 1208; 1209; Chunk0ContextOffsets = 0, 488 1210; Chunk1ContextOffsets = 12, 100 1211; Chunk2ContextOffsets = 800, 0, 0, 0, 0, 2501 1212; Chunk3ContextOffsets = 200, 0, 0, 2101 1213; Chunk4ContextOffsets = 350, 1701 1214; Chunk5ContextOffsets = 750, 1301 1215; Chunk6ContextOffsets = 1150, 901 1216; Chunk7ContextOffsets = 1550, 501 1217; Chunk8ContextOffsets = 1950, 101 1218; Chunk9ContextOffsets = 2350, 0 1219; 1220; [TestCContextTranslator_BlastxMultiQuery_MinusStrand] 1221; NumChunks = 10 1222; Chunk0StartingChunks = -1, -1, -1, 0, 0, 0 1223; Chunk1StartingChunks = -1, -1, -1, 0, 0, 0 1224; Chunk2StartingChunks = -1, -1, -1, 0, 0, 0, -1, -1, -1, 2, 2, 2, -1, -1, -1, 2, 2, 2 1225; Chunk3StartingChunks = -1, -1, -1, 2, 2, 2, -1, -1, -1, 2, 2, 2 1226; Chunk4StartingChunks = -1, -1, -1, 2, 2, 2 1227; Chunk5StartingChunks = -1, -1, -1, 2, 2, 2 1228; Chunk6StartingChunks = -1, -1, -1, 2, 2, 2 1229; Chunk7StartingChunks = -1, -1, -1, 2, 2, 2 1230; Chunk8StartingChunks = -1, -1, -1, 2, 2, 2 1231; Chunk9StartingChunks = -1, -1, -1, 2, 2, 2 1232; 1233; Chunk0AbsoluteContexts = -1, -1, -1, 3, 4, 5 1234; Chunk1AbsoluteContexts = -1, -1, -1, 3, 4, 5 1235; Chunk2AbsoluteContexts = -1, -1, -1, 3, 4, 5, -1, -1, -1, 9, 10, 11, -1, -1, -1, 15, 16, 17 1236; Chunk3AbsoluteContexts = -1, -1, -1, 9, 10, 11, -1, -1, -1, 15, 16, 17 1237; Chunk4AbsoluteContexts = -1, -1, -1, 15, 16, 17 1238; Chunk5AbsoluteContexts = -1, -1, -1, 15, 16, 17 1239; Chunk6AbsoluteContexts = -1, -1, -1, 15, 16, 17 1240; Chunk7AbsoluteContexts = -1, -1, -1, 15, 16, 17 1241; Chunk8AbsoluteContexts = -1, -1, -1, 15, 16, 17 1242; Chunk9AbsoluteContexts = -1, -1, -1, 15, 16, 17 1243; 1244; Chunk0ContextOffsets = 0, 488 1245; Chunk1ContextOffsets = 412, 100 1246; Chunk2ContextOffsets = 800, 0, 0, 0, 0, 2501 1247; Chunk3ContextOffsets = 200, 0, 0, 2101 1248; Chunk4ContextOffsets = 350, 1701 1249; Chunk5ContextOffsets = 750, 1301 1250; Chunk6ContextOffsets = 1150, 901 1251; Chunk7ContextOffsets = 1550, 501 1252; Chunk8ContextOffsets = 1950, 101 1253; Chunk9ContextOffsets = 2350, 0 1254