1 #ifndef APP__READ_BLAST_RESULT__TBL__HPP 2 #define APP__READ_BLAST_RESULT__TBL__HPP 3 4 /* $Id: tbl.hpp 118238 2008-01-25 16:49:20Z ucko $ 5 * =========================================================================== 6 * 7 * PUBLIC DOMAIN NOTICE 8 * National Center for Biotechnology Information 9 * 10 * This software/database is a "United States Government Work" under the 11 * terms of the United States Copyright Act. It was written as part of 12 * the author's official duties as a United States Government employee and 13 * thus cannot be copyrighted. This software/database is freely available 14 * to the public for use. The National Library of Medicine and the U.S. 15 * Government have not placed any restriction on its use or reproduction. 16 * 17 * Although all reasonable efforts have been taken to ensure the accuracy 18 * and reliability of the software and data, the NLM and the U.S. 19 * Government do not and cannot warrant the performance or results that 20 * may be obtained by using this software or data. The NLM and the U.S. 21 * Government disclaim all warranties, express or implied, including 22 * warranties of performance, merchantability or fitness for any particular 23 * purpose. 24 * 25 * Please cite the author in any work or product based on this material. 26 * 27 * =========================================================================== 28 * 29 * Author: Azat Badretdin 30 * 31 * File Description: 32 * auxilliary tbl class header 33 * 34 * =========================================================================== 35 */ 36 37 #include <corelib/ncbiobj.hpp> 38 39 USING_NCBI_SCOPE; 40 41 42 class Ctbl_seg : public CObject 43 { 44 public: 45 typedef map < string, string > Ttbl_qual; 46 47 bool Read(istream& in); 48 GetFuzzyFrom(void) const49 const bool& GetFuzzyFrom(void) const { return m_fuzzy_from; } ; SetFuzzyFrom(void)50 bool& SetFuzzyFrom(void) { return m_fuzzy_from; } ; SetFuzzyFrom(bool & value)51 void SetFuzzyFrom(bool& value) { m_fuzzy_from = value; } ; 52 GetFuzzyTo(void) const53 const bool& GetFuzzyTo(void) const { return m_fuzzy_to; } ; SetFuzzyTo(void)54 bool& SetFuzzyTo(void) { return m_fuzzy_to; } ; SetFuzzyTo(bool & value)55 void SetFuzzyTo(bool& value) { m_fuzzy_to = value; } ; 56 GetFrom(void) const57 const int& GetFrom(void) const { return m_from; } ; SetFrom(void)58 int& SetFrom(void) { return m_from; } ; SetFrom(int & value)59 void SetFrom(int& value) { m_from = value; } ; 60 GetTo(void) const61 const int& GetTo(void) const { return m_to; } ; SetTo(void)62 int& SetTo(void) { return m_to; } ; SetTo(int & value)63 void SetTo(int& value) { m_to = value; } ; 64 GetKey(void) const65 const string& GetKey(void) const { return m_key; } ; SetKey(void)66 string& SetKey(void) { return m_key; } ; SetKey(string & value)67 void SetKey(string& value) { m_key = value; } ; 68 GetQual(void) const69 const Ttbl_qual& GetQual(void) const { return m_qual; } ; SetQual(void)70 Ttbl_qual& SetQual(void) { return m_qual; } ; SetQual(Ttbl_qual & value)71 void SetQual(Ttbl_qual& value) { m_qual = value; } ; 72 73 private: 74 bool m_fuzzy_from; 75 bool m_fuzzy_to; 76 int m_from; 77 int m_to; 78 string m_key; 79 Ttbl_qual m_qual; 80 }; 81 82 83 84 class Ctbl_feat : public CObject 85 { 86 public: 87 typedef list < CRef < Ctbl_seg > > Ttbl_seg; 88 bool Read(istream& in); 89 GetSeg(void) const90 const Ttbl_seg& GetSeg(void) const { return m_seg; } ; SetSeg(void)91 Ttbl_seg& SetSeg(void) { return m_seg; } ; SetSeg(Ttbl_seg & value)92 void SetSeg(Ttbl_seg& value) { m_seg = value; } ; 93 GetSeqid(void) const94 const string& GetSeqid(void) const { return m_seqid; } ; SetSeqid(void)95 string& SetSeqid(void) { return m_seqid; } ; SetSeqid(string & value)96 void SetSeqid(string& value) { m_seqid = value; } ; 97 GetTableName(void) const98 const string& GetTableName(void) const { return m_table_name; } ; SetTableName(void)99 string& SetTableName(void) { return m_table_name; } ; SetTableName(string & value)100 void SetTableName(string& value) { m_table_name = value; } ; 101 102 private: 103 Ttbl_seg m_seg; 104 string m_seqid; 105 string m_table_name; 106 }; 107 108 109 110 class Ctbl 111 { 112 public: 113 typedef list < CRef < Ctbl_feat > > Ttbl_feat; 114 bool Read(istream& in); 115 GetFeat(void) const116 const Ttbl_feat& GetFeat(void) const { return m_feat; } ; SetFeat(void)117 Ttbl_feat& SetFeat(void) { return m_feat; } ; SetFeat(Ttbl_feat & value)118 void SetFeat(Ttbl_feat& value) { m_feat = value; } ; 119 private: 120 Ttbl_feat m_feat; 121 }; 122 123 124 #endif /* APP__READ_BLAST_RESULT__TBL__HPP */ 125