1# makefile for asntool and ncbi core routines, 2# 3# $Id: makeall.unx,v 6.321 2016/12/31 22:35:10 ucko Exp $ 4# 5# cdromlib data access functions, vibrant, and entrez 6# SunOS with unbundled ANSI compiler [ make LCL=acc RAN=ranlib CC=acc ] 7# SunOS with Gnu C [ make LCL=gcc RAN=ranlib CC=gcc ] 8# Sun with Solaris 2.x OS [ make LCL=sol CC="cc -Xa" OTHERLIBS="-lm"] 9# Sun with Solaris 2.x OS using gcc [ make LCL=sol CC=gcc OTHERLIBS="-lm"] 10# Silicon Graphics [ make LCL=sgi OTHERLIBS="-lm -lPW -lsun" ] 11# IBM 3090 with AIX [ make LCL=370 ] 12# IBM rs6000 with AIX [ make LCL=r6k CC=xlc ] 13# ULTRIX [ make LCL=ult RAN=ranlib ] 14# Apple AUX [ make LCL=aux SHELL=\usr\bin ] 15# NeXt [ make LCL=nxt CFLAGS1="-c -ansi" RAN=ranlib ] 16# DEC Alpha under OSF/1 version 4.x [ make LCL=alf CC=cc RAN=ranlib ] 17# DEC Alpha under OSF/1 version 3.x [ make LCL=alf CC="cc -DNCBI_NOTHREADS_AVAIL" RAN=ranlib OTHERLIBS="-lc_r -lm"] 18# BeOS [ make OTHERLIBS="" ] 19# 20# see README for other supported systems 21# 22# Subsequent makes should make ... nocopy instead of make ... all 23# to avoid recopying the include files 24# 25# To Make the Motif version of Vibrant libraries and add Vibrant front 26# end to asntool, add: 27# VIBLIBS="-lXm -lXmu -lXt -lX11" LIB4=libvibrant.a VIBFLAG="-I/am/Motif/include -DWIN_MOTIF" 28# to the argument list. Substitute the path to your Motif includes for 29# /am/Motif/include. 30# 31# Motif versions on Solaris 2.x are more complicated 32# 33# make LCL=sol CC="cc -Xa" 34# VIBLIBS="-L/netopt/X11R5/lib -L/netopt/Motif1.2.2/lib -lXm -lXmu -lXt -lX11" 35# LIB4=libvibrant.a 36# VIBFLAG="-I/netopt/X11R5/include -I/netopt/Motif1.2.2/include -DWIN_MOTIF" 37# LIB20=libncbidesk.a 38# 39# (this can be sourced from ncbi/make/viball.sol) 40# again, you must set the paths to the Motif libs properly for your system 41# 42# The build for RedHat Linux 2.XX with X11R6 requires: 43# CC="gcc -ansi" 44# VIBLIBS="-L/usr/X11R6/lib -lXm -lXpm -lXmu -lXp -lXt -lX11 -lXext" 45# 46# NOTE: It is now possible to build using shared libraries, which 47# consumes significantly less disk space. To use shared libraries, try: 48# make ... NCBI_SHLIBS=shlib NCBI_LINKINGLIBDIR=../shlib 49# NCBI_OTHERLINKOPTIONS=-R`pwd`/../shlib 50# 51# NOTE: It is no longer necessary to manually delete portions of this 52# makefile; this issue has been finessed by using the DLIBXX and TLIBXX 53# (e.g. DLIB4 and TLIB4) symbols below. 54# 55 56# default flags for compiling and loading 57 58RM_LIB = rm -f 59SUFFIXLCL = $(LCL) 60CFLAGS1 = -c -O 61LDFLAGS1 = -O 62CC = cc 63RAN = ls -l 64AR=ar 65OTHERLIBS = -lm 66VIBLIBS = -lXft -lpng -ljpeg 67VIBFLAG = 68LIBCOPY = cp -p 69SRCCOPY = ./ln-if-absent 70BINCOPY = cp -p 71 72SUFFIXENV = unx 73ASNDIR = asnstat 74LIB1 = libncbi.a 75LIB1e = libncbiext.a 76LIBTLS = libconnssl.a 77LIB2 = libncbiobj.a 78LIB3 = libncbicdr.a 79ULIB4 = libvibrant.a 80LIB4 = $(ULIB4) 81LIB4 = 82ULIB400 = libvibrantOGL.a 83LIB400 = $(ULIB400) 84LIB400 = 85LIB5 = libncbiacc.a 86LIB6 = libnetcli.a 87LIB7 = libnetentr.a 88LIB8 = libncbiNacc.a 89LIB9 = libncbiCacc.a 90# LIB10 is reserved for ncsasock 91LIB10 = 92# LIB20 is for the NCBI desktop utilities 93ULIB20 = libncbidesk.a 94LIB20 = $(ULIB20) 95LIB20 = 96ULIB45 = libddvlib.a 97LIB45 = $(ULIB45) 98LIB45 = 99LIB22 = libncbimmdb.a 100LIB23 = libncbitool.a 101LIBCOMPADJ = libblastcompadj.a 102ULIB28 = libvibgif.a 103LIB28 = $(ULIB28) 104LIB28 = 105ULIB30 = libncbicn3d.a 106LIB30 = $(ULIB30) 107LIB30 = 108ULIB3000 = libncbicn3dOGL.a 109LIB3000 = $(ULIB3000) 110LIB3000 = 111ULIB34 = libncbiindx.a 112LIB34= $(ULIB34) 113LIB34 = 114ULIB37 = libncbiprs.a 115LIB37= $(ULIB37) 116LIB37 = 117ULIB38 = libnlmzip.a 118LIB38= $(ULIB38) 119LIB38 = 120ULIB39 = libideochr.a 121LIB39= $(ULIB39) 122LIB39 = 123LIB50 = libregexp.a 124LIB60 = libblast.a 125LIB61 = libblastapi.a 126# 127# Pseudo-dummy targets when Vibrant is not used 128# 129TLIB4 = D4$(ULIB4) 130TLIB400 = D400$(ULIB400) 131TLIB20 = D20$(ULIB20) 132TLIB45 = D45$(ULIB45) 133TLIB28 = D28$(ULIB28) 134TLIB30 = D30$(ULIB30) 135TLIB3000 = D3000$(ULIB3000) 136TLIB34 = D34$(ULIB34) 137TLIB37 = D37$(ULIB37) 138TLIB38 = D38$(ULIB38) 139TLIB39 = D39$(ULIB39) 140DLIB4 = D4$(LIB4) 141DLIB400 = D400$(LIB400) 142DLIB20 = D20$(LIB20) 143DLIB45 = D45$(LIB45) 144DLIB28 = D28$(LIB28) 145DLIB30 = D30$(LIB30) 146DLIB3000 = D3000$(LIB3000) 147DLIB34 = D34$(LIB34) 148DLIB37 = D37$(LIB37) 149DLIB38 = D38$(LIB38) 150DLIB39 = D39$(LIB39) 151NCBI_INCDIR = ../include 152NCBI_LIBDIR = ../lib 153NCBI_LINKINGLIBDIR = $(NCBI_LIBDIR) 154NCBI_OTHERLINKOPTIONS = 155NCBI_SHLIBS = shlib 156NCBI_SHLIBS = 157MAKESHLIB = ../make/makeshlb.unx 158 159CFLAGS = $(CFLAGS1) -I$(NCBI_INCDIR) $(VIBFLAG) 160LDFLAGS = $(LDFLAGS1) -I$(NCBI_INCDIR) $(VIBFLAG) $(NCBI_OTHERLINKOPTIONS) -L$(NCBI_LINKINGLIBDIR) 161 162## 163## some things to make 164## 165 166# sources needed for versions of asntool and entrez 167THR_SRC = ncbithr.c 168# NCBI_LBSM_SRC = ncbi_lbsmd_stub.c 169 170SRC1e = ncbibs.c wwwutils.c ncbierr.c ncbienv.c ncbifile.c \ 171 ncbiprop.c ncbimath.c ncbimem.c ncbimisc.c \ 172 ncbimsg.c ncbistr.c ncbisgml.c ncbitime.c ncbilang.c \ 173 asnbufo.c asndebin.c asnenbin.c asngen.c asnio.c asnlex.c \ 174 asnlext.c asnout.c asnprint.c asntypes.c asngenob.c gifgen.c \ 175 togif.c ncbithr.c regex.c tsprintf.c ncbiargs.c tree.c matrix.c \ 176 ncbi_socket.c ncbi_buffer.c ncbi_types.c ncbi_core.c ncbi_core_c.c ncbi_util.c \ 177 ncbi_priv.c ncbi_ansi_ext.c ncbi_connection.c ncbi_connector.c \ 178 ncbi_connutil.c ncbi_file_connector.c ncbi_heapmgr.c \ 179 ncbi_http_connector.c ncbi_memory_connector.c $(NCBI_LBSM_SRC) \ 180 ncbi_host_info.c ncbi_server_info.c ncbi_service.c ncbi_version.c \ 181 ncbi_service_connector.c ncbi_ftp_connector.c ncbi_dispd.c \ 182 ncbi_lb.c ncbi_local.c ncbi_socket_connector.c urlquery.c binary.c \ 183 ncbi_sendmail.c ncbi_base64.c asn_connection.c ncbi_lbos.c parson.c \ 184 ncbi_ipv6.c raw_scoremat.c drwnflpt.c drwnfspc.c drwnmfls.c 185SRC1 = ncbimain.c $(SRC1e) 186 187SRCTLS = ncbi_gnutls.c 188 189SRC2 = objacces.c objalign.c objall.c objbibli.c \ 190 objfeat.c objgen.c objloc.c objmedli.c objpub.c \ 191 objres.c objscoremat.c objseq.c objblock.c objcode.c objsset.c \ 192 objsub.c objprt.c objfdef.c objalignloc.c objtable.c \ 193 objpubme.c objmdrs.c objproj.c objgbseq.c objtseq.c objinsdseq.c objmacro.c \ 194 objent2.c ent2api.c pmfapi.c objtax3.c tax3api.c objegkludge.c objentgene.c \ 195 objmla2.c mla2api.c qblastapi.c vecscnapi.c objmim.c objvalid.c mimapi.c cddapi.c \ 196 seqport.c sequtil.c prtutil.c simple.c tofasta.c tofile.c tomedlin.c \ 197 valid.c valapi.c alignmgr.c aliparse.c aliread.c alignval.c sqnutil1.c sqnutil2.c \ 198 sqnutil3.c sqnutil4.c subutil.c edutil.c asn2ff1.c asn2ff2.c asn2ff3.c asn2ff4.c \ 199 asn2ff5.c asn2ff6.c asn2gnb1.c asn2gnb2.c asn2gnb3.c asn2gnb4.c \ 200 asn2gnb5.c asn2gnb6.c ftusrstr.c gbfeat.c gbftglob.c \ 201 gbparint.c utilpars.c utilpub.c ffprint.c wprint.c satutil.c \ 202 seqmgr.c objmgr.c gather.c accmmdbs.c acccn3ds.c lsqfetch.c findrepl.c \ 203 codon.c jzcoll.c jzmisc.c maputil.c mconsist.c macroapi.c \ 204 salpedit.c salpstat.c salpacc.c salprop.c salsap.c salstruc.c salutil.c \ 205 udvseq.c blocks.c pgppop.c samutil.c ddvcolor.c viewmgr.c ddvcreate.c \ 206 jsavlt.c needleman.c txalign.c fdlobj.c alignmgr2.c alnread.c acerdapi.c aceread.c 207 208SRC3 = cdentrez.c cdromlib.c cdnewlib.c casn.c cdconfig.c objentr.c 209 210SRC4 = vibbutns.c vibextra.c vibfiles.c vibforms.c \ 211 vibgroup.c viblists.c vibmenus.c vibprmpt.c \ 212 vibsbars.c vibslate.c vibtexts.c \ 213 vibutils.c vibwndws.c vibmain.c ncbidraw.c \ 214 drawing.c mapping.c picture.c viewer.c \ 215 document.c table.c palette.c diagnost.c image.c \ 216 pictur3d.c prim3d1.c prim3d2.c prim3d3.c \ 217 prim3d4.c prim3d5.c viewer3d.c vibmouse.c netscape.c \ 218 imagelst.c treeview.c shim3d.c odlbox.c 219 220SRC5 = accentr.c accutils.c 221 222SRC7 = netentr.c netlib.c objneten.c 223 224SRC11 = objmla.c medarch.c 225 226SRC12 = objtaxon.c taxarch.c 227 228SRC20 = drawseq.c dotmatrx.c fea2seg.c fstyle.c smdlg1.c smdlg2.c smdlg3.c \ 229 smtools.c styleman.c stylemui.c glbpic.c \ 230 layout.c saldist.c saled.c salfiles.c salpanel.c salparam.c \ 231 salsa.c seqfltr.c seqgraph.c seqgrphx.c seqmtrx.c \ 232 seqpcc.c seqanal.c aacomp.c seqscrl.c valdlg.c \ 233 vsm.c vsmfile.c vsmutil.c udvgraph.c udvopen.c udvpanel.c dotvibrant.c \ 234 dlgutil1.c dlgutil2.c e2trmlst.c e2docsum.c asn2graphic.c \ 235 medview.c bspview.c gbfview.c gphview.c gphdraw.c gxydraw.c gtrdraw.c \ 236 seqpanel.c ingengraph.c ingenext.c ingenwin.c macrodlg.c \ 237 biosrc.c cdrgn.c import.c pubdesc.c seqsub.c mapgene.c prtgene.c salogif.c 238 239SRC45 = ddvclick.c ddvgraph.c ddvopen.c ddvpanel.c 240 241SRC22 = corematx.c dvncode.c objmmdb1.c objmmdb2.c objmmdb3.c objcn3d.c \ 242 mmdbapi.c mmdbapi1.c mmdbapi2.c mmdbapi3.c mmdbapi4.c mmdbentr.c \ 243 vastsubs.c prunebsc.c objcdd.c cddutil.c cddposutil.c objmime.c \ 244 strucapi.c thrdalgs.c thrdatd.c thrdbwfi.c thrdcpal.c \ 245 thrdcpll.c thrdcprl.c thrdcxei.c thrddgri.c thrdrsmp.c \ 246 thrdsal0.c thrdsalr.c thrdsalu.c thrdsgoi.c thrdslo0.c \ 247 thrdslor.c thrdslou.c thrdspci.c thrdspea.c thrdspel.c \ 248 thrdspni.c thrdttb0.c thrdttbi.c thrdzsc.c 249 250SRC23 = csim.c db_slist.c dust.c blast_dust.c falign.c g_any.c sim2.c sim3.c sim4.c \ 251 simutil.c slist.c sec.c tfuns.c toasn3.c toporg.c \ 252 pobutil.c stsutil.c suggadj.c suggest.c suggslp.c \ 253 blast.c blastutl.c blastool.c blastconcat.c splutil.c gapxdrop.c bandalg0.c bandalg1.c \ 254 bandalg2.c bandalg3.c bandalg4.c bandalg5.c bandalgn.c blastkar.c \ 255 actutils.c posit.c lookup.c readdb.c ncbisam.c ncbisort.c \ 256 salign.c salptool.c urkutil.c urkpcc.c urkptpf.c urkepi.c \ 257 urkfltr.c urkdust.c urksigu.c seg.c urkbias.c urkcnsrt.c urktree.c \ 258 pseed3.c pattern1.c impatool.c posit2.c mbalign.c \ 259 vecscrn.c mblast.c rpsutil.c kappa.c xmlblast.c bxmlobj.c \ 260 dotseq.c spidey.c motif.c blfmtutl.c 261 262SRCCOMPADJ = matrix_frequency_data.c compo_mode_condition.c \ 263 composition_adjustment.c nlm_linear_algebra.c \ 264 optimize_target_freq.c compo_heap.c smith_waterman.c \ 265 redo_alignment.c unified_pvalues.c 266 267SRC28 = gdfontg.c gdfontmb.c gdfontt.c pictogif.c \ 268 gdfontl.c gdfonts.c ncbidrwg.c drawing.c mapping.c picture.c ncbimain.c 269 270SRC30 = algorend.c cn3dmsel.c cn3dopen.c cn3dsave.c \ 271 cn3dxprt.c cn3dwin.c cn3dentr.c \ 272 cn3dmsg.c cn3dmatn.c cn3dmodl.c cn3dshim.c cn3dmesh.c \ 273 cn3dstyl.c seqcons.c 274 275SRC34 = block.c entry.c indx_blk.c utilfun.c em_index.c gb_index.c sp_index.c \ 276 pir_index.c prf_index.c xm_index.c 277 278SRC37 = add.c asci_blk.c em_ascii.c ftamain.c gb_ascii.c \ 279 genref.c ind.c loadfeat.c nucprot.c ref.c sp_ascii.c sp_ref.c \ 280 utilfeat.c utilref.c fta_qscore.c pir_ascii.c fta_clup.c fta_src.c \ 281 prf_ascii.c xm_ascii.c 282 283SRC38 = deflate.c inflate.c trees.c bits.c util.c dcompr.c streamprocs.c 284 285SRC39 = ideochrow.c humchrom_dat.c mschrom_dat.c ideochrom.c ideoorgs.c \ 286 bands_abc.c 287 288SRC50 = chartables.c get.c maketables.c pcre.c pcreposix.c study.c 289 290SRC60 = aa_ungapped.c blast_diagnostics.c blast_engine.c \ 291 blast_extend.c blast_filter.c blast_gapalign.c blast_hits.c blast_itree.c \ 292 blast_lookup.c blast_message.c blast_options.c blast_seg.c blast_seqsrc.c \ 293 blast_setup.c blast_stat.c blast_traceback.c blast_util.c blast_sw.c \ 294 gapinfo.c greedy_align.c link_hsps.c lookup_wrap.c \ 295 na_ungapped.c ncbi_math.c ncbi_std.c pattern.c phi_extend.c phi_lookup.c \ 296 lookup_util.c blast_encoding.c blast_psi.c blast_psi_priv.c blast_kappa.c \ 297 matrix_freq_ratios.c blast_hspstream.c blast_parameters.c blast_posit.c \ 298 phi_gapalign.c blast_program.c blast_query_info.c blast_tune.c \ 299 blast_aalookup.c blast_nalookup.c blast_aascan.c blast_nascan.c \ 300 blast_dynarray.c split_query.c gencode_singleton.c index_ungapped.c \ 301 hspfilter_collector.c blast_hspstream_mt_utils.c blast_traceback_mt_priv.c \ 302 boost_erf.c jumper.c 303 304SRC61 = blast_api.c blast_format.c blast_input.c blast_mtlock.c \ 305 blast_options_api.c blast_prelim.c blast_returns.c blast_seq.c \ 306 blast_seqalign.c blast_tabular.c repeats_filter.c \ 307 seqsrc_multiseq.c seqsrc_readdb.c twoseq_api.c dust_filter.c \ 308 blast_message_api.c hspfilter_queue.c 309 310SRCALL = $(THR_SRC) $(SRC1) $(SRC2) $(SRC3) $(SRC4) $(SRC5) $(SRC20) $(SRC22) \ 311 $(SRC23) $(SRC28) $(SRC30) $(SRC50) $(SRC60) $(SRC61) $(SRCCOMPADJ) 312 313# objects needed for versions of asntool and entrez 314 315THR_OBJ = ncbithr.o 316# NCBI_LBSM_OBJ = ncbi_lbsmd_stub.o 317 318OBJ1e = ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o \ 319 ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o \ 320 ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o \ 321 asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o \ 322 asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o \ 323 togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o \ 324 ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o \ 325 ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o \ 326 ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o \ 327 ncbi_http_connector.o ncbi_memory_connector.o $(NCBI_LBSM_OBJ) \ 328 ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o \ 329 ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o \ 330 ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o \ 331 ncbi_sendmail.o ncbi_base64.o asn_connection.o ncbi_lbos.o parson.o \ 332 ncbi_ipv6.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o 333OBJ1 = ncbimain.o $(OBJ1e) 334 335OBJTLS = ncbi_gnutls.o 336 337OBJ2 = objacces.o objalign.o objall.o objbibli.o \ 338 objfeat.o objgen.o objloc.o objmedli.o objpub.o \ 339 objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o \ 340 objsub.o objprt.o objfdef.o objalignloc.o objtable.o \ 341 objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o \ 342 objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o \ 343 objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o \ 344 seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o \ 345 valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o \ 346 sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o \ 347 asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o \ 348 asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o \ 349 gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o \ 350 seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o \ 351 codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o \ 352 salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o \ 353 udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o \ 354 jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o 355 356OBJ3 = cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o 357 358OBJ4 = vibbutns.o vibextra.o vibfiles.o vibforms.o \ 359 vibgroup.o viblists.o vibmenus.o vibprmpt.o \ 360 vibsbars.o vibslate.o vibtexts.o \ 361 vibutils.o vibwndws.o vibmain.o ncbidraw.o \ 362 drawing.o mapping.o picture.o viewer.o \ 363 document.o table.o palette.o diagnost.o image.o \ 364 pictur3d.o prim3d1.o prim3d2.o prim3d3.o \ 365 prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o \ 366 imagelst.o treeview.o shim3d.o odlbox.o 367 368OBJ400 = vibbutns.glo vibextra.glo vibfiles.glo vibforms.glo \ 369 vibgroup.glo viblists.glo vibmenus.glo vibprmpt.glo \ 370 vibsbars.glo vibslate.glo vibtexts.glo \ 371 vibutils.glo vibwndws.glo vibmain.glo ncbidraw.glo \ 372 drawing.glo mapping.glo picture.glo viewer.glo \ 373 document.glo table.glo palette.glo diagnost.glo image.glo \ 374 pictur3d.glo prim3d1.glo prim3d2.glo prim3d3.glo \ 375 prim3d4.glo prim3d5.glo viewer3d.glo vibmouse.glo netscape.glo \ 376 imagelst.glo treeview.glo shim3d.glo odlbox.glo 377 378OBJ5 = accentr.o accutils.o 379 380OBJ7 = netentr.o netlib.o objneten.o 381 382OBJ11 = objmla.o medarch.o 383 384OBJ12 = objtaxon.o taxarch.o 385 386OBJ20 = drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o \ 387 smtools.o styleman.o stylemui.o glbpic.o \ 388 layout.o saldist.o saled.o salfiles.o salpanel.o \ 389 salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o \ 390 seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o \ 391 vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o \ 392 dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o \ 393 medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o \ 394 seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o \ 395 biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o salogif.o 396 397OBJ45 = ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o 398 399OBJ22 = corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o \ 400 mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o \ 401 vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o \ 402 strucapi.o thrdalgs.o thrdatd.o thrdbwfi.o thrdcpal.o \ 403 thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o \ 404 thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o \ 405 thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o \ 406 thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o 407 408 409OBJ23 = csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o \ 410 simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o \ 411 pobutil.o stsutil.o suggadj.o suggest.o suggslp.o \ 412 blast.o blastutl.o blastool.o blastconcat.o splutil.o \ 413 gapxdrop.o bandalg0.o bandalg1.o \ 414 bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o \ 415 actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o \ 416 salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o \ 417 urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o \ 418 pseed3.o pattern1.o impatool.o posit2.o mbalign.o \ 419 vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o \ 420 dotseq.o spidey.o motif.o blfmtutl.o 421 422OBJCOMPADJ = matrix_frequency_data.o compo_mode_condition.o \ 423 composition_adjustment.o nlm_linear_algebra.o \ 424 optimize_target_freq.o compo_heap.o smith_waterman.o \ 425 redo_alignment.o unified_pvalues.o 426 427OBJ28 = gdfontg.o gdfontmb.o gdfontt.o pictogif.o \ 428 gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o 429 430OBJ30 = algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o \ 431 cn3dxprt.o cn3dwin.o cn3dentr.o \ 432 cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o \ 433 cn3dstyl.o seqcons.o 434 435OBJ3000 = algorend.glo cn3dmsel.glo cn3dopen.glo cn3dsave.glo \ 436 cn3dxprt.glo cn3dwin.glo cn3dentr.glo \ 437 cn3dmsg.glo cn3dmatn.glo cn3dmodl.glo cn3dshim.glo cn3dmesh.glo \ 438 cn3dstyl.glo seqcons.glo 439 440OBJ34 = block.o entry.o indx_blk.o utilfun.o em_index.o gb_index.o sp_index.o \ 441 pir_index.o prf_index.o xm_index.o 442 443OBJ37 = add.o asci_blk.o em_ascii.o ftamain.o gb_ascii.o \ 444 genref.o ind.o loadfeat.o nucprot.o ref.o sp_ascii.o sp_ref.o \ 445 utilfeat.o utilref.o fta_qscore.o pir_ascii.o fta_clup.o fta_src.o \ 446 prf_ascii.o xm_ascii.o 447 448OBJ38 = deflate.o inflate.o trees.o bits.o util.o dcompr.o streamprocs.o 449 450OBJ39 = ideochrow.o humchrom_dat.o mschrom_dat.o ideochrom.o ideoorgs.o \ 451 bands_abc.o 452 453OBJ50 = chartables.o get.o maketables.o pcre.o pcreposix.o study.o 454 455OBJ60 = aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o \ 456 blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o \ 457 blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o \ 458 blast_setup.o blast_stat.o blast_traceback.o blast_util.o \ 459 gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o \ 460 na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o \ 461 lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o \ 462 matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o \ 463 phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o \ 464 blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o \ 465 blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o \ 466 hspfilter_collector.o blast_hspstream_mt_utils.o blast_traceback_mt_priv.o \ 467 boost_erf.o jumper.o 468 469OBJ61 = blast_api.o blast_input.o blast_format.o blast_mtlock.o \ 470 blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o \ 471 blast_seqalign.o blast_tabular.o repeats_filter.o \ 472 seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o \ 473 blast_message_api.o hspfilter_queue.o 474 475 476# NOTE: if you enter an object file to an OBJxx greater than 30, you have to explicitly 477# enter the make actions below (e.g. ddvclick.o). This is because the 478# implicit make rule for opengl objects (.glo) somehow causes the default make rule for .o 479# files to disappear. OBJ30 is the first opengl dependent library and this 480# triggers this bug. 481 482 483## All things to make 484## 485all : ln-if-absent copy .WAIT nocopy asntool .WAIT $(DLIB39) 486 487ln-if-absent: ../make/ln-if-absent 488 rm -f ln-if-absent 489 ln -s ../make/ln-if-absent . 490 491nocopy : sources $(THR_OBJ) $(LIB1) $(LIBTLS) $(LIB2) $(LIB3) $(DLIB4) $(DLIB400) \ 492 $(LIB5) $(DLIB20) $(DLIB45) $(LIB22) $(LIB23) $(LIBCOMPADJ) \ 493 $(DLIB28) $(DLIB30) $(DLIB3000) \ 494 $(DLIB34) $(DLIB37) $(DLIB38) $(LIB50) $(LIB60) $(LIB61) $(NCBI_SHLIBS) 495 496sources : $(SRCALL) 497 498## To clean out the directory without removing make 499## 500clean : 501 -rm -f *.[acho] 502 503.NO_PARALLEL: copy $(ULIB4) $(ULIB30) 504 505.WAIT: 506 echo Waiting...go 507 508## Implicit actions 509## 510.SUFFIXES: .c .h .o .glo 511 512.c.o : 513 $(CC) $(CFLAGS) $< 514 515# this is ugly, because Solaris cc won't allow compile directly to .glo file 516.c.glo : 517 mv $*.o $*.tmp 518 $(CC) $(CFLAGS) -D_OPENGL $< 519 mv $*.o $*.glo 520 mv $*.tmp $*.o 521 522## Special case 523## 524 525ncbithrs.o: ncbithrs.c 526 $(CC) -DNCBI_NOTHREADS_AVAIL $(CFLAGS) ncbithrs.c 527ncbi_gnutls.o: ncbi_gnutls.c 528 $(CC) $(CFLAGS) $(GNUTLS_INCLUDE) ncbi_gnutls.c 529ncbidrwg.o: ncbidrwg.c 530 $(CC) -DWIN_GIF $(CFLAGS) ncbidrwg.c 531regex.o : regex.c 532 $(CC) $(CFLAGS) -DHAVE_STRING_H -DREGEX_MALLOC regex.c 533block.o: block.c 534 $(CC) $(CFLAGS) $< 535entry.o: entry.c 536 $(CC) $(CFLAGS) $< 537indx_blk.o: indx_blk.c 538 $(CC) $(CFLAGS) $< 539utilfun.o: utilfun.c 540 $(CC) $(CFLAGS) $< 541em_index.o: em_index.c 542 $(CC) $(CFLAGS) $< 543gb_index.o: gb_index.c 544 $(CC) $(CFLAGS) $< 545sp_index.o: sp_index.c 546 $(CC) $(CFLAGS) $< 547xm_index.o: xm_index.c 548 $(CC) $(CFLAGS) $< 549pir_index.o: pir_index.c 550 $(CC) $(CFLAGS) $< 551prf_index.o: prf_index.c 552 $(CC) $(CFLAGS) $< 553add.o: add.c 554 $(CC) $(CFLAGS) $< 555asci_blk.o: asci_blk.c 556 $(CC) $(CFLAGS) $< 557em_ascii.o: em_ascii.c 558 $(CC) $(CFLAGS) $< 559ftamain.o: ftamain.c 560 $(CC) $(CFLAGS) $< 561prf_ascii.o: prf_ascii.c 562 $(CC) $(CFLAGS) $< 563gb_ascii.o: gb_ascii.c 564 $(CC) $(CFLAGS) $< 565xm_ascii.o: xm_ascii.c 566 $(CC) $(CFLAGS) $< 567genref.o: genref.c 568 $(CC) $(CFLAGS) $< 569ind.o: ind.c 570 $(CC) $(CFLAGS) $< 571loadfeat.o: loadfeat.c 572 $(CC) $(CFLAGS) $< 573nucprot.o: nucprot.c 574 $(CC) $(CFLAGS) $< 575ref.o: ref.c 576 $(CC) $(CFLAGS) $< 577sp_ascii.o: sp_ascii.c 578 $(CC) $(CFLAGS) $< 579sp_ref.o: sp_ref.c 580 $(CC) $(CFLAGS) $< 581utilfeat.o: utilfeat.c 582 $(CC) $(CFLAGS) $< 583utilref.o: utilref.c 584 $(CC) $(CFLAGS) $< 585fta_qscore.o: fta_qscore.c 586 $(CC) $(CFLAGS) $< 587pir_ascii.o: pir_ascii.c 588 $(CC) $(CFLAGS) $< 589fta_clup.o: fta_clup.c 590 $(CC) $(CFLAGS) $< 591fta_src.o: fta_src.c 592 $(CC) $(CFLAGS) $< 593 594deflate.o: deflate.c 595 $(CC) $(CFLAGS) $< 596inflate.o: inflate.c 597 $(CC) $(CFLAGS) $< 598trees.o: trees.c 599 $(CC) $(CFLAGS) $< 600bits.o: bits.c 601 $(CC) $(CFLAGS) $< 602util.o: util.c 603 $(CC) $(CFLAGS) $< 604dcompr.o: dcompr.c 605 $(CC) $(CFLAGS) $< 606streamprocs.o: streamprocs.c 607 $(CC) $(CFLAGS) $< 608 609ideochrow.o: ideochrow.c 610 $(CC) $(CFLAGS) $< 611humchrom_dat.o: humchrom_dat.c 612 $(CC) $(CFLAGS) $< 613mschrom_dat.o: mschrom_dat.c 614 $(CC) $(CFLAGS) $< 615ideochrom.o: ideochrom.c 616 $(CC) $(CFLAGS) $< 617ideoorgs.o: ideoorgs.c 618 $(CC) $(CFLAGS) $< 619bands_abc.o: bands_abc.c 620 $(CC) $(CFLAGS) $< 621ideo_gen_obj.o: ideo_gen_obj.c 622 $(CC) $(CFLAGS) $< 623ddvgraph.o: ddvgraph.c 624 $(CC) $(CFLAGS) $< 625ddvopen.o: ddvopen.c 626 $(CC) $(CFLAGS) $< 627ddvpanel.o: ddvpanel.c 628 $(CC) $(CFLAGS) $< 629ddvclick.o: ddvclick.c 630 $(CC) $(CFLAGS) $< 631mschrom_dat.c : ideo_gen_obj mschrom.dat 632 - ./ideo_gen_obj -d mschrom.dat -f mschrom_dat -o MS 633 - mv -f mschrom_dat.h ../include 634 635humchrom_dat.c : ideo_gen_obj humchrom.dat 636 - ./ideo_gen_obj -d humchrom.dat -f humchrom_dat -o HC 637 - mv -f humchrom_dat.h ../include 638 639ideo_gen_obj: ideo_gen_obj.o ideochrom.o ideoorgs.o 640 $(CC) $(LDFLAGS) -o ideo_gen_obj ideo_gen_obj.o ideochrom.o ideoorgs.o $(NCBI_LIBDIR)/$(LIB1) $(OTHERLIBS) 641 642## use subordinate makefile for building shared libraries 643## 644shlib : shlib.$(LCL) 645 646# 647# Solaris Intel shared libs are built the same in the same manner as for 648# Solaris Sparc 649# 650shlib.sin : shlib.sol 651 652shlib.sol : 653 -mkdir ../shlib 654 -rm -f ../shlib/*.a 655 ln $(NCBI_LIBDIR)/*.a ../shlib 656 cd ../shlib; make -f $(MAKESHLIB) `ls *.a | sed "s/\.a/.so/"` NCBI_OTHERLIBS=$(OTHERLIBS) 657 rm -f ../shlib/*.a 658 659# 660# Linux shared libs are built the same in the same manner as for SGI 661# 662shlib.lnx : shlib.sgi 663 664shlib.sgi : 665 -mkdir ../shlib 666 -rm -f ../shlib/*.a 667 ln $(NCBI_LIBDIR)/*.a ../shlib 668 cd ../shlib; make -f $(MAKESHLIB) `ls *.a | sed "s/\.a/.so/"` SH1="ld -o" SH2="-shared *.o" 669 rm -f ../shlib/*.a 670 671shlib.alf : 672 -mkdir ../shlib 673 -rm -f ../shlib/*.a 674 ln $(NCBI_LIBDIR)/*.a ../shlib 675 cd ../shlib; make -f $(MAKESHLIB) `ls *.a | sed "s/\.a/.so/"` SH1="ld -o" SH2="-expect_unresolved '*' -shared *.o" 676 rm -f ../shlib/*.a 677 678## get all the source files 679## 680 681$(SRCALL) : copy 682 683copy : 684 -chmod -R ug+rw,o+r . ../include 685 $(SRCCOPY) ../corelib/tsprintf.h ../include 686 $(SRCCOPY) ../corelib/gifgen.h ../include 687 $(SRCCOPY) ../corelib/ncbi*.h ../include 688 $(SRCCOPY) ../corelib/tree*.h ../include 689 $(SRCCOPY) ../corelib/regex.h ../include 690 $(SRCCOPY) ../corelib/matrix.h ../include 691 $(SRCCOPY) ../corelib/binary.h ../include 692 $(SRCCOPY) ../corelib/morefile/*.h ../include 693 $(SRCCOPY) ../corelib/morefile/*.c . 694 $(SRCCOPY) ../link/macmet/MoreCarbonAccessors.h ../include 695 $(SRCCOPY) ../corelib/ncbilcl.$(SUFFIXLCL) ../include/ncbilcl.h 696 $(SRCCOPY) ../corelib/*.c . 697 $(SRCCOPY) ../corelib/core*.h . 698 $(SRCCOPY) ../asnlib/*.h . 699 -rm -f ../include/asn.h 700 mv asn.h ../include 701 $(SRCCOPY) ../asnlib/*.c . 702 $(SRCCOPY) ../connect/*.c . 703 $(SRCCOPY) ../connect/ncbi_ansi_ext.h . 704 $(SRCCOPY) ../connect/ncbi_assert.h . 705 $(SRCCOPY) ../connect/ncbi_priv.h . 706 $(SRCCOPY) ../connect/ncbi_comm.h . 707 $(SRCCOPY) ../connect/ncbi_config.h . 708 $(SRCCOPY) ../connect/ncbi_connssl.h . 709 $(SRCCOPY) ../connect/ncbi_lbos.h . 710 $(SRCCOPY) ../connect/ncbi_lbosp.h . 711 $(SRCCOPY) ../connect/parson.h . 712 -$(SRCCOPY) ../connect/ncbi_lbsm.h . 713 -$(SRCCOPY) ../connect/ncbi_lbsm_ipc.h . 714 $(SRCCOPY) ../connect/ncbi_host_infop.h . 715 $(SRCCOPY) ../connect/ncbi_server_infop.h . 716 $(SRCCOPY) ../connect/ncbi_servicep.h . 717 $(SRCCOPY) ../connect/ncbi_socketp.h . 718 $(SRCCOPY) ../connect/ncbi_dispd.h . 719 $(SRCCOPY) ../connect/ncbi_lbsmd.h . 720 $(SRCCOPY) ../connect/ncbi_local.h . 721 $(SRCCOPY) ../connect/ncbi_lb.h . 722 $(SRCCOPY) ../connect/ncbi_version.h . 723 $(SRCCOPY) ../connect/ncbi_base64.h . 724 $(SRCCOPY) ../connect/urlquery.h ../include 725 -mkdir ../include/connect 726 -chmod ug+rw,o+r ../include/connect 727 cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect 728 $(SRCCOPY) ../util/tables/*.c . 729 -mkdir -p ../include/util/tables 730 cp -fp ../util/tables/*.h ../include/util/tables 731 $(SRCCOPY) ../util/creaders/*.c . 732 -mkdir -p ../include/util/creaders 733 cp -fp ../util/creaders/*.h ../include/util/creaders 734 $(SRCCOPY) ../ctools/*.c . 735 $(SRCCOPY) ../ctools/*.h . 736 -mkdir ../include/ctools 737 -chmod ug+rw,o+r ../include/ctools 738 cp -fp ../ctools/*.h ../include/ctools 739 $(SRCCOPY) ../object/*.c . 740 $(SRCCOPY) ../object/*.h ../include 741 $(SRCCOPY) ../access/*.c . 742 $(SRCCOPY) ../access/*.h ../include 743 $(SRCCOPY) ../$(ASNDIR)/*.h ../include 744 $(SRCCOPY) ../api/*.h ../include 745 $(SRCCOPY) ../api/*.c . 746 $(SRCCOPY) ../api/*.inc . 747 $(SRCCOPY) ../cdromlib/*.h ../include 748 $(SRCCOPY) ../cdromlib/*.c . 749 $(SRCCOPY) ../vibrant/*.h ../include 750 $(SRCCOPY) ../vibrant/*.c . 751 $(SRCCOPY) ../desktop/*.h ../include 752 $(SRCCOPY) ../desktop/*.c . 753 $(SRCCOPY) ../biostruc/*.h ../include 754 $(SRCCOPY) ../biostruc/*.c . 755 $(SRCCOPY) ../biostruc/cdd/*.h ../include 756 $(SRCCOPY) ../biostruc/cdd/*.c . 757 $(SRCCOPY) ../biostruc/cn3d/*.h ../include 758 $(SRCCOPY) ../biostruc/cn3d/*.c . 759 $(SRCCOPY) ../tools/*.h ../include 760 $(SRCCOPY) ../tools/*.c . 761 $(SRCCOPY) ../cn3d/*.h ../include 762 $(SRCCOPY) ../cn3d/*.c . 763 $(SRCCOPY) ../gif/*.c . 764 $(SRCCOPY) ../gif/*.h ../include 765 $(SRCCOPY) ../ddv/*.h ../include 766 $(SRCCOPY) ../ddv/*.c . 767 $(SRCCOPY) ../regexp/*.c . 768 $(SRCCOPY) ../regexp/*.h ../include 769 - $(SRCCOPY) ../internal/compr/*.c . 770 - $(SRCCOPY) ../internal/compr/*.h ../include 771 - $(SRCCOPY) ../internal/libindx/*.c . 772 - $(SRCCOPY) ../internal/libindx/*.h ../include 773 - $(SRCCOPY) ../internal/libpars/*.c . 774 - $(SRCCOPY) ../internal/libpars/*.h ../include 775 - $(SRCCOPY) ../internal/ideogram/*.c . 776 - $(SRCCOPY) ../internal/ideogram/*.dat . 777 - $(SRCCOPY) ../internal/ideogram/ideochr*.h ../include 778 - $(SRCCOPY) ../internal/ideogram/ideoorgs.h . 779 - $(SRCCOPY) ../internal/ccap/*.c . 780 - $(SRCCOPY) ../internal/ccap/*.dat . 781 - $(SRCCOPY) ../internal/ccap/*.h ../include 782 $(SRCCOPY) ncbidraw.c ncbidrwg.c 783 $(SRCCOPY) ncbithr.c ncbithrs.c 784 $(SRCCOPY) ../network/nsclilib/*.h ../include 785 $(SRCCOPY) ../network/blast3/client/*.h ../include 786 $(SRCCOPY) ../network/id1arch/*.h ../include 787 -$(SRCCOPY) ../network/id2arch/*.h ../include 788 - mkdir -p ../include/algo/blast/core 789 $(SRCCOPY) ../algo/blast/core/*.c . 790 $(SRCCOPY) ../algo/blast/core/*.h . 791 $(SRCCOPY) ../algo/blast/core/*.inl . 792 cp -fp ../algo/blast/core/*.h ../include/algo/blast/core 793 - mkdir -p ../include/algo/blast/composition_adjustment 794 $(SRCCOPY) ../algo/blast/composition_adjustment/*.c . 795 $(SRCCOPY) ../algo/blast/composition_adjustment/*.h ../include 796 cp -fp ../algo/blast/composition_adjustment/*.h \ 797 ../include/algo/blast/composition_adjustment 798 - mkdir -p ../include/algo/blast/api 799 $(SRCCOPY) ../algo/blast/api/*.c . 800 cp -fp ../algo/blast/api/*.h ../include/algo/blast/api 801 - chmod -R ug+rw,o+r . 802 803 804## make libraries 805## 806$(THR_OBJ): $(THR_SRC) 807 $(CC) $(CFLAGS) $< 808 $(LIBCOPY) $(THR_OBJ) $(NCBI_LIBDIR) 809 810$(LIB1) : $(OBJ1) 811 - $(RM_LIB) $(LIB1) 812 $(AR) cru $(LIB1) $(OBJ1) 813 $(LIBCOPY) $(LIB1) $(NCBI_LIBDIR) 814 $(RAN) $(NCBI_LIBDIR)/$(LIB1) 815 816$(LIB1e) : $(OBJ1e) 817 - $(RM_LIB) $(LIB1e) 818 $(AR) cru $(LIB1e) $(OBJ1e) 819 $(LIBCOPY) $(LIB1e) $(NCBI_LIBDIR) 820 $(RAN) $(NCBI_LIBDIR)/$(LIB1e) 821 822$(LIBTLS) : $(OBJTLS) 823 - $(RM_LIB) $(LIBTLS) 824 $(AR) cru $(LIBTLS) $(OBJTLS) 825 $(LIBCOPY) $(LIBTLS) $(NCBI_LIBDIR) 826 $(RAN) $(NCBI_LIBDIR)/$(LIBTLS) 827 828$(LIB2) : $(OBJ2) 829 - $(RM_LIB) $(LIB2) 830 $(AR) cru $(LIB2) $(OBJ2) 831 $(LIBCOPY) $(LIB2) $(NCBI_LIBDIR) 832 $(RAN) $(NCBI_LIBDIR)/$(LIB2) 833 834$(LIB3) : $(OBJ3) 835 - $(RM_LIB) $(LIB3) 836 $(AR) cru $(LIB3) $(OBJ3) 837 $(LIBCOPY) $(LIB3) $(NCBI_LIBDIR) 838 $(RAN) $(NCBI_LIBDIR)/$(LIB3) 839 840# 841# Dummy targets used when Vibrant is not used 842# 843D4: 844 845D400: 846 847D20: 848 849D45: 850 851D28: 852 853D30: 854 855D3000: 856 857D34: 858 859D37: 860 861D38: 862 863D39: 864 865$(TLIB4) : $(ULIB4) 866 867$(TLIB400) : $(ULIB400) 868 869$(TLIB20) : $(ULIB20) 870 871$(TLIB45) : $(ULIB45) 872 873$(TLIB28) : $(ULIB28) 874 875$(TLIB30) : $(ULIB30) 876 877$(TLIB3000) : $(ULIB3000) 878 879$(TLIB34) : $(ULIB34) 880 881$(TLIB37) : $(ULIB37) 882 883$(TLIB38) : $(ULIB38) 884 885$(TLIB39) : $(ULIB39) 886 887$(ULIB4) : .WAIT $(OBJ4) 888 - $(RM_LIB) $(LIB4) 889 $(AR) cru $(LIB4) $(OBJ4) 890 $(LIBCOPY) $(LIB4) $(NCBI_LIBDIR) 891 $(RAN) $(NCBI_LIBDIR)/$(LIB4) 892 893$(ULIB400) : $(OBJ400) 894 - $(RM_LIB) $(LIB400) 895 $(AR) cru $(LIB400) $(OBJ400) 896 $(LIBCOPY) $(LIB400) $(NCBI_LIBDIR) 897 $(RAN) $(NCBI_LIBDIR)/$(LIB400) 898 899$(ULIB20) : $(OBJ20) 900 - $(RM_LIB) $(LIB20) 901 $(AR) cru $(LIB20) $(OBJ20) 902 $(LIBCOPY) $(LIB20) $(NCBI_LIBDIR) 903 $(RAN) $(NCBI_LIBDIR)/$(LIB20) 904 905$(ULIB45) : $(OBJ45) 906 - $(RM_LIB) $(LIB45) 907 $(AR) cru $(LIB45) $(OBJ45) 908 $(LIBCOPY) $(LIB45) $(NCBI_LIBDIR) 909 $(RAN) $(NCBI_LIBDIR)/$(LIB45) 910 911$(ULIB28) : $(OBJ28) 912 - $(RM_LIB) $(LIB28) 913 $(AR) cru $(LIB28) $(OBJ28) 914 $(LIBCOPY) $(LIB28) $(NCBI_LIBDIR) 915 $(RAN) $(NCBI_LIBDIR)/$(LIB28) 916 917$(ULIB30) : .WAIT $(OBJ30) 918 - $(RM_LIB) $(LIB30) 919 $(AR) cru $(LIB30) $(OBJ30) 920 $(LIBCOPY) $(LIB30) $(NCBI_LIBDIR) 921 $(RAN) $(NCBI_LIBDIR)/$(LIB30) 922 923$(ULIB3000) : .WAIT $(OBJ3000) 924 - $(RM_LIB) $(LIB3000) 925 $(AR) cru $(LIB3000) $(OBJ3000) 926 $(LIBCOPY) $(LIB3000) $(NCBI_LIBDIR) 927 $(RAN) $(NCBI_LIBDIR)/$(LIB3000) 928 929$(ULIB34) : $(OBJ34) 930 - $(RM_LIB) $(LIB34) 931 $(AR) cru $(LIB34) $(OBJ34) 932 $(LIBCOPY) $(LIB34) $(NCBI_LIBDIR) 933 $(RAN) $(NCBI_LIBDIR)/$(LIB34) 934 935$(ULIB37) : $(OBJ37) 936 - $(RM_LIB) $(LIB37) 937 $(AR) cru $(LIB37) $(OBJ37) 938 $(LIBCOPY) $(LIB37) $(NCBI_LIBDIR) 939 $(RAN) $(NCBI_LIBDIR)/$(LIB37) 940 941$(ULIB38) : $(OBJ38) 942 - $(RM_LIB) $(LIB38) 943 $(AR) cru $(LIB38) $(OBJ38) 944 $(LIBCOPY) $(LIB38) $(NCBI_LIBDIR) 945 $(RAN) $(NCBI_LIBDIR)/$(LIB38) 946 947$(ULIB39) : $(OBJ39) 948 - $(RM_LIB) $(LIB39) 949 $(AR) cru $(LIB39) $(OBJ39) 950 $(LIBCOPY) $(LIB39) $(NCBI_LIBDIR) 951 $(RAN) $(NCBI_LIBDIR)/$(LIB39) 952 953$(LIB5) : $(OBJ5) 954 - $(RM_LIB) $(LIB5) 955 $(AR) cru $(LIB5) $(OBJ5) 956 $(LIBCOPY) $(LIB5) $(NCBI_LIBDIR) 957 $(RAN) $(NCBI_LIBDIR)/$(LIB5) 958 959$(LIB22) : $(OBJ22) 960 - $(RM_LIB) $(LIB22) 961 $(AR) cru $(LIB22) $(OBJ22) 962 $(LIBCOPY) $(LIB22) $(NCBI_LIBDIR) 963 $(RAN) $(NCBI_LIBDIR)/$(LIB22) 964 965$(LIB23) : $(OBJ23) 966 - $(RM_LIB) $(LIB23) 967 $(AR) cru $(LIB23) $(OBJ23) 968 $(LIBCOPY) $(LIB23) $(NCBI_LIBDIR) 969 $(RAN) $(NCBI_LIBDIR)/$(LIB23) 970 971$(LIBCOMPADJ) : $(OBJCOMPADJ) 972 - $(RM_LIB) $(LIBCOMPADJ) 973 $(AR) cru $(LIBCOMPADJ) $(OBJCOMPADJ) 974 $(LIBCOPY) $(LIBCOMPADJ) $(NCBI_LIBDIR) 975 $(RAN) $(NCBI_LIBDIR)/$(LIBCOMPADJ) 976 977$(LIB50) : $(OBJ50) 978 - $(RM_LIB) $(LIB50) 979 $(AR) cru $(LIB50) $(OBJ50) 980 $(LIBCOPY) $(LIB50) $(NCBI_LIBDIR) 981 $(RAN) $(NCBI_LIBDIR)/$(LIB50) 982 983$(LIB60) : $(OBJ60) 984 - $(RM_LIB) $(LIB60) 985 $(AR) cru $(LIB60) $(OBJ60) 986 $(LIBCOPY) $(LIB60) $(NCBI_LIBDIR) 987 $(RAN) $(NCBI_LIBDIR)/$(LIB60) 988 989$(LIB61) : $(OBJ61) 990 - $(RM_LIB) $(LIB61) 991 $(AR) cru $(LIB61) $(OBJ61) 992 $(LIBCOPY) $(LIB61) $(NCBI_LIBDIR) 993 $(RAN) $(NCBI_LIBDIR)/$(LIB61) 994 995## make asntool application 996## This is ALWAYS the command line version 997 998# asntool 999 1000asntool : asntool.c $(LIB1) 1001 $(CC) -o asntool $(LDFLAGS) asntool.c asncode.c $(NCBI_LIBDIR)/$(LIB1) $(OTHERLIBS) 1002 $(BINCOPY) asntool ../bin 1003 1004.KEEP_STATE: 1005