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CW8scripts/H06-Jan-2017-1,9111,537

vs2013/H06-Jan-2017-71,80871,656

vs2015/H06-Jan-2017-72,35172,199

xCode/H06-Jan-2017-8,7328,685

ln-if-absentH A D17-Jun-2002880 4832

ln-if-absent.beosH A D17-Jun-20021.7 KiB10582

make-mac-bundleH A D29-Aug-20082.2 KiB7766

makeApps.metH A D07-May-200734.3 KiB1,161973

makeLibs.metH A D19-Feb-201228 KiB949780

makeStat.metH A D16-Jan-200314.9 KiB492394

makeall.unxH A D03-May-202232.5 KiB1,005867

makeallchivesH A D03-May-20228.6 KiB371254

makedemo.unxH A D31-Aug-20169.8 KiB395286

makedis.cshH A D03-May-202216.9 KiB595457

makeentr.clH A D14-Nov-19972.6 KiB9581

makeindx.unxH A D25-Jan-20083 KiB12392

makenet.unxH A D03-May-202246.7 KiB1,6041,262

makeshlb.unxH A D18-Mar-1999390 1917

packApps.metH A D03-Apr-20075 KiB184148

readme.aixH A D20-Apr-20042.2 KiB6644

readme.dosH A D10-Jul-20122 KiB5839

readme.macH A D16-Jun-20081.4 KiB2824

readme.unxH A D26-Jul-200554.2 KiB980954

updatelibs.metH A D04-Dec-20023.9 KiB168123

readme.aix

1
2General Information for BLAST Developers on IBM-AIX Systems
3===========================================================
4
5 To compile the toolkit under AIX follow the steps in readme.unx
6 SPECIAL NOTE:
7 To build the 64-bit version type:
8 $ env AIX_MODE=64 ./ncbi/make/makedis.csh or
9 $ env AIX_MODE=64 ./ncbi/make/makedis.csh 2> log 1>&2    ! Korn shell users
10 % env AIX_MODE=64 ./ncbi/make/makedis.csh >& log         ! C shell users
11
12 AIX Specific information
13 ------------------------
14
15 The following files are the main platform dependent files
16
17 1.  makedis.csh in ./ncbi/make
18
19 2.  ibm64_auto.ncbi.mk and ibm_auto.ncbi.mk in ./ncbi/platform
20
21 3.  ncbilcl.ibm in ./ncbi/corelib
22
23
24makedis.csh:
25
26     This file identifies the machine model via uname -M and assigns
27     the corresponding architecture.  Currently, AIX Power3 is the
28     only architecture explicitly targeted.  All other architectures
29     are identified as auto.  auto refers to the compiler flag that
30     will check the architecture and build corresponding executables.
31     The auto flag assumes that the execution environment is the same
32     as the compilation environment.
33
34ibm_xxxx.ncbi.mk:
35
36     Currently xxxx can be either auto64 or auto.  auto64 builds the
37     64-bit version.
38     This file contains compiler and loader flags specific for IBM.
39
40ncbilcl.ibm:
41
42     Pre-processor defines / platform specific.
43
44
45
46Multi-threading
47---------------
48
49
50     When running multi-threaded it may be beneficial to set the
51     following environment variables:
52
53                 AIXTHREAD_SCOPE=S
54                 MALLOCMULTIHEAP=true
55
56     Addional benefit is possibly achieved by experimenting with
57     the value of the environment variables SPINLOOPTIME and
58     YIELDLOOPTIME. The user might initially try values of 500
59     for each of these and vary them to see the effect.  These
60     variables affect the behavior of a thread at the end of a
61     parallel region. Generally, best application (though not
62     necessarily system throughput) performance is achieved by
63     putting an idle thread into a busy wait rather than letting
64     it sleep.  Setting SPINLOOPTIME and YIELDLOOPTIME to a suitable
65     "large" number encourages the former behavior.
66

readme.dos

1# $Id: readme.dos,v 6.15 2012/07/10 19:26:57 mcelhany Exp $
2# By Denis Vakatov, NCBI
3
4
5Getting the NCBI C Toolkit sources
6------------------------------------
7
8Anyone can download a self-extracting archive via FTP, or browse via ViewVC:
9    ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/CURRENT/ncbiz.exe
10    http://www.ncbi.nlm.nih.gov/viewvc/cvs/ncbi/
11
12NCBI users can also access the C Toolkit sources using various browsers:
13    http://mini.ncbi.nlm.nih.gov/1k2ro (LXR browser)
14    http://mini.ncbi.nlm.nih.gov/1k2rp (CVS browser)
15
16Note: If you are using both the C Toolkit and the C++ Toolkit, please see
17the C++ Toolkit book chapter "C Toolkit Resources for C++ Toolkit Users":
18    http://www.ncbi.nlm.nih.gov/books/NBK7180/
19
20
21
22Building the NCBI C Toolkit
23-----------------------------
24
25For the following instructions, we assume:
26* the Toolkit sources are deployed in "C:\ncbi"; and
27* you are using Visual Studio 2010 (if using another version, change the
28  instances of "msvc1000_prj" below to reflect your version).
29
301) Run Microsoft Visual Studio.
31
322) Load the NCBI C Toolkit project solution:
33      "File" / "Open" / "Project/Solution..."
34         C:\ncbi\make\msvc1000_prj\ncbi.sln
35
363) Set the build mode (default is Debug/Win32):
37      "Build" / "Configuration Manager"
38
394) Build the entire Toolkit or the desired project(s).
404.1) To build everything, choose "all".
414.2) Or, you can choose to build any libraries or applications
42     in any configuration by making the appropriate selection using either
43     the "Solution Explorer" or the "Class View" pane.
44
455) On success, the libraries and executables can be found under
46      C:\ncbi\make\msvc1000_prj\...\<build_mode>\
47   where "..." represents the hierarchy of the selected build items and
48   <build_mode> stands for one of (see step 3 above):
49      Debug, DebugDLL, Release, ReleaseDLL.
50
51   For example, if you chose to build the "Release" configuration, then
52   the built executables will be located at:
53      C:\ncbi\make\msvc1000_prj\...\Release\*.exe
54
55
56*****  Please send your remarks to:  <toolbox@ncbi.nlm.nih.gov>  *****
57
58

readme.mac

1
2Directions for building the NCBI toolkit with CodeWarrior on Macintosh computers
3
4NB: Unless you have some specific reason to build with CodeWarrior, we
5recommend instead building with GCC from the command line, per the
6directions in readme.unx.
7
81)  Increase the Preferred Size of the Script Editor to 7000 K using the
9    Finder.  Script Editor is the program that runs the AppleScript make*.met
10    files used to build the NCBI libraries and applications.
112)  Take the sources of NCBI tookit at
12      ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/ncbi.tar.gz
133)  Unpack them (for instance, by running
14      tar zxf ncbi.tar.gz
15    from the command line)
164)  Drag the resulting ncbi folder inside the Metrowerks CodeWarrior 7.0
17    folder.  The make files expect this configuration, and will not work if
18    the ncbi folder is put anywhere else.
195)  Inside the ncbi:make subfolder are two files with .met extensions.
20    Double click on CodeWarrior IDE 4.2.5, then run makeall.met.  The libraries
21    are built in the ncbi:lib folder.
22    You may need to restart CodeWarrior before running the make script.
236)  After the libraries are built, run makedemo.met.  This builds application
24    programs such as Entrez, Sequin, and tbl2asn.
257)  In order to run on MacOS versions earlier than 8.5, open the PowerPC
26    projects, click on AppearanceLib, choose Window->Project Inspector, check
27    Import Weak, and click the Save button.  Do the same for NavigationLib.
28

readme.unx

1
2~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3DIRECTIONS for building the toolkit on UNIX platforms
4~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
5
6
7==========================================================================
8|| W A R N I N G !!
9|| That readme.unx file is valid only for new NCBI toolkit issued
10|| after April, 6, 1999
11==========================================================================
12
13Building the NCBI toolkit
14-----------------------------
15
161) Take the sources of NCBI tookit at
17	ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/ncbi.tar.Z
18Extract this file to some empty directory, for example "toolkit" :
19	mkdir toolkit
20	cd toolkit
21	#assume that the file ncbi.tar.Z is already here
22	compress -d < ncbi.tar.Z | tar xf -
23The platform-dependent config files are located in directory ncbi/platform/
24and you can modify them or make your own ports to different platforms.
25
262) you will see the file in ncbi/make:
27
28   (i) ./ncbi/make/makedis.csh
29
30       This file should actually do the make.
31
32       Normally, its output is trapped  as
33
34			in case of bash or sh or zsh:
35            ./ncbi/make/makedis.csh 2>&1 | tee out.makedis.txt
36			in case of csh or tcsh
37            ./ncbi/make/makedis.csh |& tee out.makedis.txt
38
39       If there are problems with the make, this is the file which should be
40       sent to toolbox@ncbi.nlm.nih.gov
41
42       in addition, the output of
43
44         uname -a
45
46       should also be sent.
47
483) Errors relating to the 'internal/' directory can be ignored.  It is normal
49   for outside users to see these messages.  (We use the same makefiles,
50   internally, for the price of external users seeing these ignored errors,
51   we have only one set of makefiles to maintain for inside and outside of
52   NCBI.)
53
54Karl Sirotkin Fri Jul 24 16:50:19 EDT 1998
55
56
574) There is some useful information about NCBI toolkit located at:
58	ftp://ftp.ncbi.nih.gov/toolbox/FAQ.html
59
605) Here is sample scenario to build NCBI toolkit on DEC Alpha with OSF/1
61I'm using bash as login shell
62
63Script started on Mon Jan 31 14:08:20 2000
64> uname -a
65OSF1 annie V4.0 878 alpha
66> exec bash
67bash-2.00$ PS1='\h|\w|\!> '
68annie|/work|502> mkdir toolbox
69annie|/work|503> cd toolbox
70annie|/work/toolbox|504> ftp ftp.ncbi.nih.gov
71Connected to ftp.ncbi.nih.gov.
72220-Welcome to the NCBI FTP Server (ftp.ncbi.nih.gov)
73220-
74220 ncbi FTP server (Version wu-2.5.0(1p1) Sat Aug 28 10:35:19 EDT 1999) ready.
75Name (ftp.ncbi.nih.gov:coremake): ftp
76331 Guest login ok, send your complete e-mail address as password.
77Password:
78230 Guest login ok, access restrictions apply.
79Remote system type is UNIX.
80Using binary mode to transfer files.
81ftp> bin
82200 Type set to I.
83ftp> cd /toolbox/ncbi_tools
84250 CWD command successful.
85ftp> dir
86200 PORT command successful.
87150 Opening ASCII mode data connection for /bin/ls.
88total 490
89drwxrwsr-x   6 1042     506          512 Jan 24 23:38 .
90drwxrwsr-x   8 1042     506          512 Sep 20 20:08 ..
91lrwxrwxrwx   1 3755     506           12 Jan 24 23:38 CURRENT -> old/20000124
92lrwxrwxrwx   1 3755     506           11 Oct 28 16:23 FAQ.html -> ../FAQ.html
93drwxrws---   2 4039     506          512 Oct  2  1998 LastToolKit
94-rw-rw-r--   1 3755     511        52019 May 13  1999 README
95-rw-rw-r--   1 3755     511        59692 May 13  1999 README.htm
96-rw-r--r--   1 3755     506       112063 Jan 27  1999 asnload.tar.Z
97lrwxrwxrwx   1 3755     506           18 Oct 28 16:23 data.tar.Z -> CURRENT/data.tar.Z
98drwxr-sr-x   2 1042     506          512 Sep  9  1997 docs
99lrwxrwxrwx   1 3755     506           16 Oct 28 16:23 ncbi.hqx -> CURRENT/ncbi.hqx
100lrwxrwxrwx   1 3755     506           18 Oct 28 16:23 ncbi.tar.Z -> CURRENT/ncbi.tar.Z
101lrwxrwxrwx   1 3755     506           19 Oct 28 16:23 ncbi.tar.gz -> CURRENT/ncbi.tar.gz
102lrwxrwxrwx   1 3755     506           17 Oct 28 16:23 ncbiz.exe -> CURRENT/ncbiz.exe
103lrwxrwxrwx   1 3755     506            4 Oct 28 16:23 newdoc -> docs
104drwxr-sr-x   7 3755     506          512 Jan 24 19:12 old
105lrwxrwxrwx   1 3755     506           13 Oct 28 16:23 readme.unx -> ../readme.unx
106drwxr-sr-x   2 3755     506         1024 Jan 24 21:26 sdkdoc
107226 Transfer complete.
108ftp> get ncbi.tar.Z
109200 PORT command successful.
110150 Opening BINARY mode data connection for ncbi.tar.Z (12504643 bytes).
111226 Transfer complete.
11212504643 bytes received in 15 seconds (8.3e+02 Kbytes/s)
113ftp> bye
114221-You have transferred 12504643 bytes in 1 files.
115221-Total traffic for this session was 12506736 bytes in 2 transfers.
116221-Thank you for using the FTP service on ncbi.
117221 Goodbye.
118annie|/work/toolbox|505> ls -l
119total 12224
120-rw-r--r--   1 coremake ncbi     12504643 Jan 31 14:09 ncbi.tar.Z
121annie|/work/toolbox|506> uncompress < ncbi.tar.Z |tar xf -
122annie|/work/toolbox|507> ls -l
123total 12225
124drwxr-xr-x  32 coremake ncbi         1024 Jan 24 16:18 ncbi
125-rw-r--r--   1 coremake ncbi     12504643 Jan 31 14:09 ncbi.tar.Z
126annie|/work/toolbox|508> ./ncbi/make/makedis.csh 2>&1|tee out.makedis.txt
127platform is alphaOSF1
128make CFLAGS1="-fast -c " LDFLAGS1="-fast" SHELL="/usr/bin/sh" LCL="alf" RAN="ls -l" CC="cc" LIB30=libncbicn3d.a LIB28=libvibgif.a LIB4=libvibrant.a LIB20=libncbidesk.a VIBFLAG="-DWIN_MOTIF" VIBLIBS="-non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub" all
129chmod -R ug+rw,o+r .
130./ln-if-absent ../corelib/tsprintf.h ../include
131./ln-if-absent ../corelib/gifgen.h ../include
132./ln-if-absent ../corelib/ncbi*.h ../include
133./ln-if-absent ../corelib/tree*.h ../include
134./ln-if-absent ../corelib/regex.h ../include
135./ln-if-absent ../corelib/matrix.h ../include
136./ln-if-absent ../corelib/binary.h ../include
137./ln-if-absent ../corelib/ncbilcl.alf ../include/ncbilcl.h
138./ln-if-absent ../corelib/*.c .
139./ln-if-absent ../corelib/core*.h .
140./ln-if-absent ../asnlib/*.h .
141mv asn.h ../include
142./ln-if-absent ../asnlib/*.c .
143./ln-if-absent ../connect/*.c .
144./ln-if-absent ../connect/*.h ../include
145./ln-if-absent ../object/*.c .
146./ln-if-absent ../object/*.h ../include
147./ln-if-absent ../access/*.c .
148./ln-if-absent ../access/*.h ../include
149./ln-if-absent ../asnstat/*.h ../include
150./ln-if-absent ../api/*.h ../include
151./ln-if-absent ../api/*.c .
152./ln-if-absent ../cdromlib/*.h ../include
153./ln-if-absent ../cdromlib/*.c .
154./ln-if-absent ../vibrant/*.h ../include
155./ln-if-absent ../vibrant/*.c .
156./ln-if-absent ../desktop/*.h ../include
157./ln-if-absent ../desktop/*.c .
158./ln-if-absent ../biostruc/*.h ../include
159./ln-if-absent ../biostruc/*.c .
160./ln-if-absent ../tools/*.h ../include
161./ln-if-absent ../tools/*.c .
162./ln-if-absent ../cn3d/*.h ../include
163./ln-if-absent ../cn3d/*.c .
164./ln-if-absent ../gif/*.c .
165./ln-if-absent ../gif/*.h ../include
166./ln-if-absent ../ddv/*.h ../include
167./ln-if-absent ../ddv/*.c .
168./ln-if-absent ../internal/compr/*.c .
169set: No match.
170make: [copy] Error 1 (ignored)
171./ln-if-absent ../internal/compr/*.h ../include
172set: No match.
173make: [copy] Error 1 (ignored)
174./ln-if-absent ../internal/libindx/*.c .
175set: No match.
176make: [copy] Error 1 (ignored)
177./ln-if-absent ../internal/libindx/*.h ../include
178set: No match.
179make: [copy] Error 1 (ignored)
180./ln-if-absent ../internal/libpars/*.c .
181set: No match.
182make: [copy] Error 1 (ignored)
183./ln-if-absent ../internal/libpars/*.h ../include
184set: No match.
185make: [copy] Error 1 (ignored)
186./ln-if-absent ../internal/ccap/*.c .
187set: No match.
188make: [copy] Error 1 (ignored)
189./ln-if-absent ../internal/ccap/*.dat .
190set: No match.
191make: [copy] Error 1 (ignored)
192./ln-if-absent ../internal/ccap/*.h ../include
193set: No match.
194make: [copy] Error 1 (ignored)
195./ln-if-absent ncbidraw.c ncbidrwg.c
196./ln-if-absent ncbithr.c ncbithrs.c
197./ln-if-absent ../network/id1arch/*.h ../include
198chmod -R ug+rw,o+r .
199echo Waiting...go
200Waiting...go
201cc -fast -c  -I../include -DWIN_MOTIF ncbithr.c
202cp -p ncbithr.o ../lib
203cc -fast -c  -I../include -DWIN_MOTIF ncbibs.c
204cc -fast -c  -I../include -DWIN_MOTIF wwwutils.c
205cc -fast -c  -I../include -DWIN_MOTIF ncbierr.c
206cc -fast -c  -I../include -DWIN_MOTIF ncbienv.c
207cc -fast -c  -I../include -DWIN_MOTIF ncbifile.c
208cc -fast -c  -I../include -DWIN_MOTIF ncbimain.c
209cc -fast -c  -I../include -DWIN_MOTIF ncbiprop.c
210cc -fast -c  -I../include -DWIN_MOTIF ncbimath.c
211cc -fast -c  -I../include -DWIN_MOTIF ncbimem.c
212cc -fast -c  -I../include -DWIN_MOTIF ncbimisc.c
213cc -fast -c  -I../include -DWIN_MOTIF ncbimsg.c
214cc -fast -c  -I../include -DWIN_MOTIF ncbistr.c
215cc -fast -c  -I../include -DWIN_MOTIF ncbisgml.c
216cc -fast -c  -I../include -DWIN_MOTIF ncbitime.c
217cc -fast -c  -I../include -DWIN_MOTIF ncbilang.c
218cc -fast -c  -I../include -DWIN_MOTIF asnbufo.c
219cc -fast -c  -I../include -DWIN_MOTIF asndebin.c
220cc -fast -c  -I../include -DWIN_MOTIF asnenbin.c
221cc -fast -c  -I../include -DWIN_MOTIF asngen.c
222cc -fast -c  -I../include -DWIN_MOTIF asnio.c
223cc -fast -c  -I../include -DWIN_MOTIF asnlex.c
224cc -fast -c  -I../include -DWIN_MOTIF asnlext.c
225cc -fast -c  -I../include -DWIN_MOTIF asnout.c
226cc -fast -c  -I../include -DWIN_MOTIF asnprint.c
227cc -fast -c  -I../include -DWIN_MOTIF asntypes.c
228cc -fast -c  -I../include -DWIN_MOTIF asngenob.c
229cc -fast -c  -I../include -DWIN_MOTIF gifgen.c
230cc -fast -c  -I../include -DWIN_MOTIF togif.c
231cc -DNCBI_NOTHREADS_AVAIL -fast -c  -I../include -DWIN_MOTIF ncbithrs.c
232cc -fast -c  -I../include -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c
233cc -fast -c  -I../include -DWIN_MOTIF tsprintf.c
234cc -fast -c  -I../include -DWIN_MOTIF ncbiargs.c
235cc -fast -c  -I../include -DWIN_MOTIF tree.c
236cc -fast -c  -I../include -DWIN_MOTIF matrix.c
237cc -fast -c  -I../include -DWIN_MOTIF -DNCBI_C ncbi_socket.c
238cc -fast -c  -I../include -DWIN_MOTIF ncbi_buffer.c
239cc -fast -c  -I../include -DWIN_MOTIF urlquery.c
240cc -fast -c  -I../include -DWIN_MOTIF binary.c
241rm -f libncbi.a
242ar cru libncbi.a ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbimain.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o urlquery.o binary.o
243cp -p libncbi.a ../lib
244ls -l ../lib/libncbi.a
245-rw-r--r--   1 coremake ncbi      827962 Jan 31 14:11 ../lib/libncbi.a
246cc -fast -c  -I../include -DWIN_MOTIF objacces.c
247cc -fast -c  -I../include -DWIN_MOTIF objalign.c
248cc -fast -c  -I../include -DWIN_MOTIF objall.c
249cc -fast -c  -I../include -DWIN_MOTIF objbibli.c
250cc -fast -c  -I../include -DWIN_MOTIF objfeat.c
251cc -fast -c  -I../include -DWIN_MOTIF objgen.c
252cc -fast -c  -I../include -DWIN_MOTIF objloc.c
253cc -fast -c  -I../include -DWIN_MOTIF objmedli.c
254cc -fast -c  -I../include -DWIN_MOTIF objpub.c
255cc -fast -c  -I../include -DWIN_MOTIF objres.c
256cc -fast -c  -I../include -DWIN_MOTIF objseq.c
257cc -fast -c  -I../include -DWIN_MOTIF objblock.c
258cc -fast -c  -I../include -DWIN_MOTIF objcode.c
259cc -fast -c  -I../include -DWIN_MOTIF objsset.c
260cc -fast -c  -I../include -DWIN_MOTIF objsub.c
261cc -fast -c  -I../include -DWIN_MOTIF objprt.c
262cc -fast -c  -I../include -DWIN_MOTIF objfdef.c
263cc -fast -c  -I../include -DWIN_MOTIF objalignloc.c
264cc -fast -c  -I../include -DWIN_MOTIF objmime.c
265cc -fast -c  -I../include -DWIN_MOTIF objpubme.c
266cc -fast -c  -I../include -DWIN_MOTIF objmdrs.c
267cc -fast -c  -I../include -DWIN_MOTIF objproj.c
268cc -fast -c  -I../include -DWIN_MOTIF objent2.c
269cc -fast -c  -I../include -DWIN_MOTIF ent2api.c
270cc -fast -c  -I../include -DWIN_MOTIF seqport.c
271cc -fast -c  -I../include -DWIN_MOTIF sequtil.c
272cc -fast -c  -I../include -DWIN_MOTIF prtutil.c
273cc -fast -c  -I../include -DWIN_MOTIF simple.c
274cc -fast -c  -I../include -DWIN_MOTIF tofasta.c
275cc -fast -c  -I../include -DWIN_MOTIF tofile.c
276cc -fast -c  -I../include -DWIN_MOTIF tomedlin.c
277cc -fast -c  -I../include -DWIN_MOTIF valid.c
278cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
279#define LAST ( (Uint1)1)
280-------------^
281cc -fast -c  -I../include -DWIN_MOTIF alignmgr.c
282cc -fast -c  -I../include -DWIN_MOTIF alignval.c
283cc -fast -c  -I../include -DWIN_MOTIF sqnutil1.c
284cc: Warning: sqnutil1.c, line 3630: In this statement, & before array "(trp->codon)" is ignored.
285    HeapSort ((VoidPtr) &(trp->codon), 6, sizeof (Uint1), SortCodons);
286------------------------^
287cc -fast -c  -I../include -DWIN_MOTIF sqnutil2.c
288cc -fast -c  -I../include -DWIN_MOTIF subutil.c
289cc -fast -c  -I../include -DWIN_MOTIF edutil.c
290cc -fast -c  -I../include -DWIN_MOTIF asn2ff1.c
291cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
292#define LAST ( (Uint1)1)
293-------------^
294cc -fast -c  -I../include -DWIN_MOTIF asn2ff2.c
295cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
296#define LAST ( (Uint1)1)
297-------------^
298cc -fast -c  -I../include -DWIN_MOTIF asn2ff3.c
299cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
300#define LAST ( (Uint1)1)
301-------------^
302cc -fast -c  -I../include -DWIN_MOTIF asn2ff4.c
303cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
304#define LAST ( (Uint1)1)
305-------------^
306cc -fast -c  -I../include -DWIN_MOTIF asn2ff5.c
307cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
308#define LAST ( (Uint1)1)
309-------------^
310cc -fast -c  -I../include -DWIN_MOTIF asn2ff6.c
311cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
312#define LAST ( (Uint1)1)
313-------------^
314cc -fast -c  -I../include -DWIN_MOTIF ftusrstr.c
315cc -fast -c  -I../include -DWIN_MOTIF gbfeat.c
316cc -fast -c  -I../include -DWIN_MOTIF gbftglob.c
317cc -fast -c  -I../include -DWIN_MOTIF gbparint.c
318cc -fast -c  -I../include -DWIN_MOTIF utilpars.c
319cc -fast -c  -I../include -DWIN_MOTIF utilpub.c
320cc -fast -c  -I../include -DWIN_MOTIF ffprint.c
321cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
322#define LAST ( (Uint1)1)
323-------------^
324cc -fast -c  -I../include -DWIN_MOTIF wprint.c
325cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
326#define LAST ( (Uint1)1)
327-------------^
328cc -fast -c  -I../include -DWIN_MOTIF satutil.c
329cc -fast -c  -I../include -DWIN_MOTIF seqmgr.c
330cc -fast -c  -I../include -DWIN_MOTIF objmgr.c
331cc -fast -c  -I../include -DWIN_MOTIF gather.c
332cc -fast -c  -I../include -DWIN_MOTIF accmmdbs.c
333cc -fast -c  -I../include -DWIN_MOTIF acccn3ds.c
334cc -fast -c  -I../include -DWIN_MOTIF lsqfetch.c
335cc -fast -c  -I../include -DWIN_MOTIF findrepl.c
336cc -fast -c  -I../include -DWIN_MOTIF apparam.c
337cc -fast -c  -I../include -DWIN_MOTIF codon.c
338cc -fast -c  -I../include -DWIN_MOTIF jzcoll.c
339cc: Warning: jzcoll.c, line 615: In this statement, & before array "(cs_option.flabel_format)" is ignored.
340			MemCopy(&(cs_option.flabel_format), &flabel_format, (size_t)FEATDEF_ANY*sizeof(Uint1));
341--------------------------------^
342cc -fast -c  -I../include -DWIN_MOTIF jzmisc.c
343cc -fast -c  -I../include -DWIN_MOTIF maputil.c
344cc: Warning: maputil.c, line 314: Type long double has the same representation as type double on this platform and is treated as a synonym for type double in this compilation mode.
345		   sprintf(label, "%2.2Lf", (long double) m_val);
346---------------------------------------------^
347cc -fast -c  -I../include -DWIN_MOTIF mconsist.c
348cc -fast -c  -I../include -DWIN_MOTIF txalign.c
349cc -fast -c  -I../include -DWIN_MOTIF salpedit.c
350cc -fast -c  -I../include -DWIN_MOTIF salpstat.c
351cc -fast -c  -I../include -DWIN_MOTIF salpacc.c
352cc -fast -c  -I../include -DWIN_MOTIF salsap.c
353cc -fast -c  -I../include -DWIN_MOTIF salstruc.c
354cc -fast -c  -I../include -DWIN_MOTIF salutil.c
355cc -fast -c  -I../include -DWIN_MOTIF salprop.c
356cc -fast -c  -I../include -DWIN_MOTIF udvseq.c
357cc -fast -c  -I../include -DWIN_MOTIF blocks.c
358cc -fast -c  -I../include -DWIN_MOTIF pgppop.c
359cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
360#define LAST ( (Uint1)1)
361-------------^
362cc -fast -c  -I../include -DWIN_MOTIF samutil.c
363cc -fast -c  -I../include -DWIN_MOTIF ddvcolor.c
364rm -f libncbiobj.a
365ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objmime.o objpubme.o objmdrs.o objproj.o objent2.o ent2api.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o alignmgr.o alignval.o sqnutil1.o sqnutil2.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o apparam.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o txalign.o salpedit.o salpstat.o salpacc.o salsap.o salstruc.o salutil.o salprop.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o
366cp -p libncbiobj.a ../lib
367ls -l ../lib/libncbiobj.a
368-rw-r--r--   1 coremake ncbi     4873308 Jan 31 14:13 ../lib/libncbiobj.a
369cc -fast -c  -I../include -DWIN_MOTIF cdentrez.c
370cc -fast -c  -I../include -DWIN_MOTIF cdromlib.c
371cc -fast -c  -I../include -DWIN_MOTIF cdnewlib.c
372cc -fast -c  -I../include -DWIN_MOTIF casn.c
373cc -fast -c  -I../include -DWIN_MOTIF cdconfig.c
374cc -fast -c  -I../include -DWIN_MOTIF objentr.c
375rm -f libncbicdr.a
376ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o
377cp -p libncbicdr.a ../lib
378ls -l ../lib/libncbicdr.a
379-rw-r--r--   1 coremake ncbi      268044 Jan 31 14:13 ../lib/libncbicdr.a
380cc -fast -c  -I../include -DWIN_MOTIF vibbutns.c
381cc -fast -c  -I../include -DWIN_MOTIF vibextra.c
382cc -fast -c  -I../include -DWIN_MOTIF vibfiles.c
383cc -fast -c  -I../include -DWIN_MOTIF vibforms.c
384cc -fast -c  -I../include -DWIN_MOTIF vibgroup.c
385cc -fast -c  -I../include -DWIN_MOTIF viblists.c
386cc -fast -c  -I../include -DWIN_MOTIF vibmenus.c
387cc -fast -c  -I../include -DWIN_MOTIF vibprmpt.c
388cc -fast -c  -I../include -DWIN_MOTIF vibsbars.c
389cc -fast -c  -I../include -DWIN_MOTIF vibslate.c
390cc -fast -c  -I../include -DWIN_MOTIF vibtexts.c
391cc -fast -c  -I../include -DWIN_MOTIF vibutils.c
392cc -fast -c  -I../include -DWIN_MOTIF vibwndws.c
393cc -fast -c  -I../include -DWIN_MOTIF ncbidraw.c
394cc -fast -c  -I../include -DWIN_MOTIF drawing.c
395cc -fast -c  -I../include -DWIN_MOTIF mapping.c
396cc -fast -c  -I../include -DWIN_MOTIF picture.c
397cc -fast -c  -I../include -DWIN_MOTIF viewer.c
398cc -fast -c  -I../include -DWIN_MOTIF document.c
399cc -fast -c  -I../include -DWIN_MOTIF table.c
400cc -fast -c  -I../include -DWIN_MOTIF palette.c
401cc -fast -c  -I../include -DWIN_MOTIF diagnost.c
402cc -fast -c  -I../include -DWIN_MOTIF image.c
403cc -fast -c  -I../include -DWIN_MOTIF pictur3d.c
404cc -fast -c  -I../include -DWIN_MOTIF prim3d1.c
405cc -fast -c  -I../include -DWIN_MOTIF prim3d2.c
406cc -fast -c  -I../include -DWIN_MOTIF prim3d3.c
407cc -fast -c  -I../include -DWIN_MOTIF prim3d4.c
408cc -fast -c  -I../include -DWIN_MOTIF prim3d5.c
409cc -fast -c  -I../include -DWIN_MOTIF viewer3d.c
410cc -fast -c  -I../include -DWIN_MOTIF vibmouse.c
411cc -fast -c  -I../include -DWIN_MOTIF netscape.c
412cc -fast -c  -I../include -DWIN_MOTIF imagelst.c
413cc -fast -c  -I../include -DWIN_MOTIF treeview.c
414cc -fast -c  -I../include -DWIN_MOTIF shim3d.c
415cc -fast -c  -I../include -DWIN_MOTIF odlbox.c
416rm -f libvibrant.a
417ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o
418cp -p libvibrant.a ../lib
419ls -l ../lib/libvibrant.a
420-rw-r--r--   1 coremake ncbi     1624658 Jan 31 14:14 ../lib/libvibrant.a
421cc -fast -c  -I../include -DWIN_MOTIF accentr.c
422cc -fast -c  -I../include -DWIN_MOTIF accutils.c
423rm -f libncbiacc.a
424ar cru libncbiacc.a accentr.o accutils.o
425cp -p libncbiacc.a ../lib
426ls -l ../lib/libncbiacc.a
427-rw-r--r--   1 coremake ncbi       83678 Jan 31 14:14 ../lib/libncbiacc.a
428cc -fast -c  -I../include -DWIN_MOTIF drawseq.c
429cc -fast -c  -I../include -DWIN_MOTIF dotmatrx.c
430cc -fast -c  -I../include -DWIN_MOTIF fea2seg.c
431cc -fast -c  -I../include -DWIN_MOTIF fstyle.c
432cc -fast -c  -I../include -DWIN_MOTIF smdlg1.c
433cc -fast -c  -I../include -DWIN_MOTIF smdlg2.c
434cc -fast -c  -I../include -DWIN_MOTIF smdlg3.c
435cc -fast -c  -I../include -DWIN_MOTIF smtools.c
436cc -fast -c  -I../include -DWIN_MOTIF styleman.c
437cc -fast -c  -I../include -DWIN_MOTIF stylemui.c
438cc -fast -c  -I../include -DWIN_MOTIF glbpic.c
439cc -fast -c  -I../include -DWIN_MOTIF layout.c
440cc -fast -c  -I../include -DWIN_MOTIF saldist.c
441cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
442#define DEL ((Uint1)2)
443------------^
444cc -fast -c  -I../include -DWIN_MOTIF saled.c
445cc -fast -c  -I../include -DWIN_MOTIF salfiles.c
446cc -fast -c  -I../include -DWIN_MOTIF salpanel.c
447cc -fast -c  -I../include -DWIN_MOTIF salparam.c
448cc -fast -c  -I../include -DWIN_MOTIF salsa.c
449cc -fast -c  -I../include -DWIN_MOTIF seqfltr.c
450cc -fast -c  -I../include -DWIN_MOTIF seqgraph.c
451cc -fast -c  -I../include -DWIN_MOTIF seqgrphx.c
452cc -fast -c  -I../include -DWIN_MOTIF seqmtrx.c
453cc -fast -c  -I../include -DWIN_MOTIF seqpcc.c
454cc -fast -c  -I../include -DWIN_MOTIF seqanal.c
455cc -fast -c  -I../include -DWIN_MOTIF aacomp.c
456cc -fast -c  -I../include -DWIN_MOTIF seqscrl.c
457cc -fast -c  -I../include -DWIN_MOTIF vsm.c
458cc -fast -c  -I../include -DWIN_MOTIF vsmfile.c
459cc -fast -c  -I../include -DWIN_MOTIF vsmutil.c
460cc -fast -c  -I../include -DWIN_MOTIF udvgraph.c
461cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
462#define LAST ( (Uint1)1)
463-------------^
464cc -fast -c  -I../include -DWIN_MOTIF udvopen.c
465cc -fast -c  -I../include -DWIN_MOTIF udvpanel.c
466cc -fast -c  -I../include -DWIN_MOTIF dlgutil1.c
467cc -fast -c  -I../include -DWIN_MOTIF dlgutil2.c
468cc -fast -c  -I../include -DWIN_MOTIF medview.c
469cc -fast -c  -I../include -DWIN_MOTIF bspview.c
470cc -fast -c  -I../include -DWIN_MOTIF gbfview.c
471cc -fast -c  -I../include -DWIN_MOTIF gphview.c
472cc -fast -c  -I../include -DWIN_MOTIF gphdraw.c
473cc -fast -c  -I../include -DWIN_MOTIF gxydraw.c
474cc -fast -c  -I../include -DWIN_MOTIF gtrdraw.c
475cc -fast -c  -I../include -DWIN_MOTIF biosrc.c
476cc -fast -c  -I../include -DWIN_MOTIF cdrgn.c
477cc -fast -c  -I../include -DWIN_MOTIF import.c
478cc -fast -c  -I../include -DWIN_MOTIF pubdesc.c
479cc -fast -c  -I../include -DWIN_MOTIF seqsub.c
480cc -fast -c  -I../include -DWIN_MOTIF mapgene.c
481cc -fast -c  -I../include -DWIN_MOTIF prtgene.c
482cc -fast -c  -I../include -DWIN_MOTIF ddvclick.c
483cc -fast -c  -I../include -DWIN_MOTIF ddvcreate.c
484cc -fast -c  -I../include -DWIN_MOTIF ddvgraph.c
485cc -fast -c  -I../include -DWIN_MOTIF ddvopen.c
486cc -fast -c  -I../include -DWIN_MOTIF ddvpanel.c
487rm -f libncbidesk.a
488ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dlgutil1.o dlgutil2.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o ddvclick.o ddvcreate.o ddvgraph.o ddvopen.o ddvpanel.o
489cp -p libncbidesk.a ../lib
490ls -l ../lib/libncbidesk.a
491-rw-r--r--   1 coremake ncbi     3168050 Jan 31 14:16 ../lib/libncbidesk.a
492cc -fast -c  -I../include -DWIN_MOTIF corematx.c
493cc -fast -c  -I../include -DWIN_MOTIF dvncode.c
494cc -fast -c  -I../include -DWIN_MOTIF objmmdb1.c
495cc -fast -c  -I../include -DWIN_MOTIF objmmdb2.c
496cc -fast -c  -I../include -DWIN_MOTIF objmmdb3.c
497cc -fast -c  -I../include -DWIN_MOTIF mmdbapi.c
498cc -fast -c  -I../include -DWIN_MOTIF mmdbapi1.c
499cc -fast -c  -I../include -DWIN_MOTIF mmdbapi2.c
500cc -fast -c  -I../include -DWIN_MOTIF mmdbapi3.c
501cc -fast -c  -I../include -DWIN_MOTIF mmdbapi4.c
502cc -fast -c  -I../include -DWIN_MOTIF mmdbentr.c
503cc -fast -c  -I../include -DWIN_MOTIF vastsubs.c
504cc -fast -c  -I../include -DWIN_MOTIF prunebsc.c
505rm -f libncbimmdb.a
506ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o
507cp -p libncbimmdb.a ../lib
508ls -l ../lib/libncbimmdb.a
509-rw-r--r--   1 coremake ncbi      778712 Jan 31 14:16 ../lib/libncbimmdb.a
510cc -fast -c  -I../include -DWIN_MOTIF csim.c
511cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
512#define DEL ((Uint1)2)
513------------^
514cc -fast -c  -I../include -DWIN_MOTIF db_slist.c
515cc -fast -c  -I../include -DWIN_MOTIF dust.c
516cc -fast -c  -I../include -DWIN_MOTIF falign.c
517cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
518#define DEL ((Uint1)2)
519------------^
520cc -fast -c  -I../include -DWIN_MOTIF g_any.c
521cc: Warning: g_any.c, line 92: The redefinition of the macro "DEL" conflicts with a current definition because the number of parameters is different.  The redefinition is now in effect.
522#define DEL(k)                          \
523------------^
524cc -fast -c  -I../include -DWIN_MOTIF sim2.c
525cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
526#define DEL ((Uint1)2)
527------------^
528cc -fast -c  -I../include -DWIN_MOTIF sim3.c
529cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
530#define DEL ((Uint1)2)
531------------^
532cc -fast -c  -I../include -DWIN_MOTIF sim4.c
533cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
534#define DEL ((Uint1)2)
535------------^
536cc -fast -c  -I../include -DWIN_MOTIF simutil.c
537cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
538#define DEL ((Uint1)2)
539------------^
540cc -fast -c  -I../include -DWIN_MOTIF slist.c
541cc -fast -c  -I../include -DWIN_MOTIF sec.c
542cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
543#define DEL ((Uint1)2)
544------------^
545cc -fast -c  -I../include -DWIN_MOTIF tfuns.c
546cc -fast -c  -I../include -DWIN_MOTIF toasn3.c
547cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
548#define LAST ( (Uint1)1)
549-------------^
550cc -fast -c  -I../include -DWIN_MOTIF toporg.c
551cc -fast -c  -I../include -DWIN_MOTIF pobutil.c
552cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
553#define DEL ((Uint1)2)
554------------^
555cc -fast -c  -I../include -DWIN_MOTIF stsutil.c
556cc -fast -c  -I../include -DWIN_MOTIF suggadj.c
557cc -fast -c  -I../include -DWIN_MOTIF suggest.c
558cc -fast -c  -I../include -DWIN_MOTIF suggslp.c
559cc -fast -c  -I../include -DWIN_MOTIF blast.c
560cc -fast -c  -I../include -DWIN_MOTIF blastutl.c
561cc -fast -c  -I../include -DWIN_MOTIF blastool.c
562cc -fast -c  -I../include -DWIN_MOTIF splutil.c
563cc -fast -c  -I../include -DWIN_MOTIF gapxdrop.c
564cc -fast -c  -I../include -DWIN_MOTIF bandalg0.c
565cc -fast -c  -I../include -DWIN_MOTIF bandalg1.c
566cc -fast -c  -I../include -DWIN_MOTIF bandalg2.c
567cc -fast -c  -I../include -DWIN_MOTIF bandalg3.c
568cc -fast -c  -I../include -DWIN_MOTIF bandalg4.c
569cc -fast -c  -I../include -DWIN_MOTIF bandalg5.c
570cc -fast -c  -I../include -DWIN_MOTIF bandalgn.c
571cc -fast -c  -I../include -DWIN_MOTIF blastkar.c
572cc -fast -c  -I../include -DWIN_MOTIF posit.c
573cc -fast -c  -I../include -DWIN_MOTIF lookup.c
574cc -fast -c  -I../include -DWIN_MOTIF readdb.c
575cc -fast -c  -I../include -DWIN_MOTIF ncbisam.c
576cc -fast -c  -I../include -DWIN_MOTIF ncbisort.c
577cc -fast -c  -I../include -DWIN_MOTIF salign.c
578cc -fast -c  -I../include -DWIN_MOTIF salptool.c
579cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
580#define DEL ((Uint1)2)
581------------^
582cc -fast -c  -I../include -DWIN_MOTIF urkutil.c
583cc -fast -c  -I../include -DWIN_MOTIF urkpcc.c
584cc -fast -c  -I../include -DWIN_MOTIF urkptpf.c
585cc -fast -c  -I../include -DWIN_MOTIF urkepi.c
586cc -fast -c  -I../include -DWIN_MOTIF urkfltr.c
587cc -fast -c  -I../include -DWIN_MOTIF urkdust.c
588cc -fast -c  -I../include -DWIN_MOTIF urksigu.c
589cc -fast -c  -I../include -DWIN_MOTIF seg.c
590cc -fast -c  -I../include -DWIN_MOTIF urkbias.c
591cc -fast -c  -I../include -DWIN_MOTIF urkcnsrt.c
592cc -fast -c  -I../include -DWIN_MOTIF urktree.c
593cc -fast -c  -I../include -DWIN_MOTIF pseed3.c
594cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
595#define DEL ((Uint1)2)
596------------^
597cc -fast -c  -I../include -DWIN_MOTIF pattern1.c
598cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
599#define DEL ((Uint1)2)
600------------^
601cc -fast -c  -I../include -DWIN_MOTIF impatool.c
602cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
603#define DEL ((Uint1)2)
604------------^
605cc -fast -c  -I../include -DWIN_MOTIF posit2.c
606cc -fast -c  -I../include -DWIN_MOTIF newkar.c
607cc -fast -c  -I../include -DWIN_MOTIF mbalign.c
608cc -fast -c  -I../include -DWIN_MOTIF mbutils.c
609cc -fast -c  -I../include -DWIN_MOTIF vecscrn.c
610rm -f libncbitool.a
611ar cru libncbitool.a csim.o db_slist.o dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o newkar.o mbalign.o mbutils.o vecscrn.o
612cp -p libncbitool.a ../lib
613ls -l ../lib/libncbitool.a
614-rw-r--r--   1 coremake ncbi     2217638 Jan 31 14:17 ../lib/libncbitool.a
615cc -fast -c  -I../include -DWIN_MOTIF gdfontg.c
616cc -fast -c  -I../include -DWIN_MOTIF gdfontmb.c
617cc -fast -c  -I../include -DWIN_MOTIF gdfontt.c
618cc -fast -c  -I../include -DWIN_MOTIF pictogif.c
619cc -fast -c  -I../include -DWIN_MOTIF gdfontl.c
620cc -fast -c  -I../include -DWIN_MOTIF gdfonts.c
621cc -DWIN_GIF -fast -c  -I../include -DWIN_MOTIF ncbidrwg.c
622rm -f libvibgif.a
623ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o
624cp -p libvibgif.a ../lib
625ls -l ../lib/libvibgif.a
626-rw-r--r--   1 coremake ncbi      250960 Jan 31 14:17 ../lib/libvibgif.a
627cc -fast -c  -I../include -DWIN_MOTIF algorend.c
628cc -fast -c  -I../include -DWIN_MOTIF cn3dmsel.c
629cc -fast -c  -I../include -DWIN_MOTIF cn3dopen.c
630cc -fast -c  -I../include -DWIN_MOTIF cn3dsave.c
631cc -fast -c  -I../include -DWIN_MOTIF cn3dxprt.c
632cc -fast -c  -I../include -DWIN_MOTIF cn3dwin.c
633cc -fast -c  -I../include -DWIN_MOTIF cn3dentr.c
634cc -fast -c  -I../include -DWIN_MOTIF cn3dmsg.c
635cc -fast -c  -I../include -DWIN_MOTIF cn3dmatn.c
636cc -fast -c  -I../include -DWIN_MOTIF cn3dmodl.c
637cc -fast -c  -I../include -DWIN_MOTIF cn3dshim.c
638cc -fast -c  -I../include -DWIN_MOTIF cn3dmesh.c
639rm -f libncbicn3d.a
640ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o
641cp -p libncbicn3d.a ../lib
642ls -l ../lib/libncbicn3d.a
643-rw-r--r--   1 coremake ncbi      448322 Jan 31 14:18 ../lib/libncbicn3d.a
644cc -o asntool -fast -I../include -DWIN_MOTIF  -L../lib asntool.c asncode.c ../lib/libncbi.a -lm
645cp -p asntool ../bin
646make -f makedemo.unx CFLAGS1="-fast -c" LDFLAGS1="-fast" SHELL="/usr/bin/sh" LCL="alf" RAN="ls -l" CC="cc" LIB4=-lvibrant VIBLIBS="-non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub" VIBFLAG="-DWIN_MOTIF"
647./ln-if-absent ../demo/*.* .
648./ln-if-absent ../internal/*.* .
649set: No match.
650make: [copy] Error 1 (ignored)
651chmod -R ug+rw,o+r .
652echo Waiting...go
653Waiting...go
654cc -o testcore -fast -I../include  -L../lib -DWIN_MOTIF testcore.c -lvibrant -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm
655cc -o makeset -fast -I../include  -L../lib -DWIN_MOTIF makeset.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm
656cc -o getmesh -fast -I../include  -L../lib -DWIN_MOTIF getmesh.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm
657cc -o indexpub -fast -I../include  -L../lib -DWIN_MOTIF indexpub.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm
658cc -o getpub -fast -I../include  -L../lib -DWIN_MOTIF getpub.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm
659cc -o testobj -fast -I../include  -L../lib -DWIN_MOTIF testobj.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm
660cc -o seqtest -fast -I../include  -L../lib -DWIN_MOTIF seqtest.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm
661cc -o dosimple -fast -I../include  -L../lib -DWIN_MOTIF dosimple.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm
662cc -o asn2ff -fast -I../include  -L../lib -DWIN_MOTIF asn2ff.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm
663cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
664#define LAST ( (Uint1)1)
665-------------^
666cc: Warning: asn2ff.c, line 63: In this statement, the referenced type of the pointer value "message" is const, but the referenced type of the target of this assignment is not.
667	fprintf(fpl, "%s\n", message);
668--------^
669cc -o getseq -fast -I../include  -L../lib -DWIN_MOTIF getseq.c -lvibrant -lncbiacc -lncbicdr -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm
670cc -o getfeat -fast -I../include  -L../lib -DWIN_MOTIF getfeat.c -lvibrant -lncbiacc -lncbicdr -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm
671cc -o checksub -fast -I../include  -L../lib -DWIN_MOTIF checksub.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm
672cc -o asndhuff -fast -I../include  -L../lib -DWIN_MOTIF asndhuff.c -lvibrant -lncbiacc -lncbicdr -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm
673cc -o entrcmd -fast -I../include  -L../lib -DWIN_MOTIF entrcmd.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm
674cc -o asn2fast -fast -I../include  -L../lib -DWIN_MOTIF asn2fast.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm
675cc -o errhdr -fast -I../include  -L../lib -DWIN_MOTIF errhdr.c -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm
676cc -o cdscan -fast -I../include  -L../lib -DWIN_MOTIF cdscan.c -lvibrant -lncbiacc -lncbicdr -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm
677cc -o findspl -fast -I../include  -L../lib -DWIN_MOTIF findspl.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm
678cc -o ncbisort -fast -I../include  -L../lib -DWIN_MOTIF sortcmd.c -lncbitool -lncbi -lm
679cc -o fa2htgs -fast -I../include  -L../lib -DWIN_MOTIF fa2htgs.c -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub -lm
680cc -o fastacmd -fast -I../include  -L../lib -DWIN_MOTIF fastacmd.c -lncbitool -lncbiobj -lncbi -lm
681cc -o formatdb -fast -I../include  -L../lib -DWIN_MOTIF formatdb.c -lncbitool -lncbiobj -lncbi -lm
682cc -o blastall -fast -I../include  -L../lib -DWIN_MOTIF blastall.c  -lncbitool -lncbiobj -lncbi -lm
683cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
684#define DEL ((Uint1)2)
685------------^
686cc -o blastpgp -fast -I../include  -L../lib -DWIN_MOTIF blastpgp.c  -lncbitool -lncbiobj -lncbi -lm
687cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
688#define DEL ((Uint1)2)
689------------^
690cc -o testval -fast -I../include  -L../lib -DWIN_MOTIF testval.c -lncbiobj -lncbi -lm
691cc -o seedtop -fast -I../include  -L../lib -DWIN_MOTIF seedtop.c  -lncbitool -lncbiobj -lncbi -lm
692cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
693#define DEL ((Uint1)2)
694------------^
695cc -o fmerge -fast -I../include  -L../lib -DWIN_MOTIF fmerge.c -lncbitool -lncbiobj -lncbi -lm
696cc -o makemat -fast -I../include  -L../lib -DWIN_MOTIF makemat.c  -lncbitool -lncbiobj -lncbi -lm
697cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
698#define DEL ((Uint1)2)
699------------^
700cc -o copymat -fast -I../include  -L../lib -DWIN_MOTIF copymat.c  -lncbitool -lncbiobj -lncbi -lm
701cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
702#define DEL ((Uint1)2)
703------------^
704cc: Warning: copymat.c, line 592: In this statement, & before array "(combinedMatrix[0])" is ignored.
705    FileWrite((void *) &(combinedMatrix[0]), sizeof(ScoreRow),
706-----------------------^
707cc -o impala -fast -I../include  -L../lib -DWIN_MOTIF profiles.c  -lncbitool -lncbiobj -lncbi -lm
708cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
709#define DEL ((Uint1)2)
710------------^
711cc -o bl2seq -fast -I../include  -L../lib -DWIN_MOTIF bl2seq.c -lncbitool -lncbiobj -lncbi -lm
712cc -o megablst -fast -I../include  -L../lib -DWIN_MOTIF megablst.c  -lncbitool -lncbiobj -lncbi -lm
713cc -o vecscreen -fast -I../include  -L../lib -DWIN_MOTIF vecscreen.c  -lncbitool -lncbiobj -lncbi -lm
714cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
715#define DEL ((Uint1)2)
716------------^
717make -f makedemo.unx CFLAGS1="-fast -c" LDFLAGS1="-fast" SHELL="/usr/bin/sh" LCL="alf" RAN="ls -l" CC="cc" THREAD_OBJ=ncbithr.o THREAD_OTHERLIBS=-lpthread LIB4=-lvibrant VIBLIBS="-non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub" VIBFLAG="-DWIN_MOTIF" blastall blastpgp seedtop
718cc -o blastall -fast -I../include  -L../lib -DWIN_MOTIF blastall.c ncbithr.o -lncbitool -lncbiobj -lncbi -lm -lpthread
719cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
720#define DEL ((Uint1)2)
721------------^
722cc -o blastpgp -fast -I../include  -L../lib -DWIN_MOTIF blastpgp.c ncbithr.o -lncbitool -lncbiobj -lncbi -lm -lpthread
723cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
724#define DEL ((Uint1)2)
725------------^
726cc -o seedtop -fast -I../include  -L../lib -DWIN_MOTIF seedtop.c ncbithr.o -lncbitool -lncbiobj -lncbi -lm -lpthread
727cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
728#define DEL ((Uint1)2)
729------------^
730make -f makenet.unx CFLAGS1="-fast -c " LDFLAGS1="-fast" SHELL="/usr/bin/sh" CC="cc" RAN="ls -l" OTHERLIBS="-lm" NETENTREZVERSION="2.02c2ASN1SPEC6 " BLIB31=libvibnet.a VIBLIBS="-non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub " VIBFLAG="-DWIN_MOTIF" VIB="Psequin Nentrez Cn3D udv ddv blastcl3 "
731./ln-if-absent ../connect/test/*.c .
732./ln-if-absent ../network/entrez/client/*.h ../include
733./ln-if-absent ../network/entrez/client/*.c .
734./ln-if-absent ../network/medarch/client/*.h ../include
735./ln-if-absent ../network/medarch/client/*.c .
736./ln-if-absent ../network/taxonomy/client/*.h ../include
737set: No match.
738make: [copy] Error 1 (ignored)
739./ln-if-absent ../network/taxonomy/client/*.c .
740set: No match.
741make: [copy] Error 1 (ignored)
742./ln-if-absent ../network/taxon1/stdalone/*.h ../include
743set: No match.
744make: [copy] Error 1 (ignored)
745./ln-if-absent ../network/taxon1/stdalone/*.c .
746set: No match.
747make: [copy] Error 1 (ignored)
748./ln-if-absent ../network/taxon1/client/*.h ../include
749./ln-if-absent ../network/taxon1/client/*.c .
750./ln-if-absent ../network/taxon1/common/*.h ../include
751./ln-if-absent ../network/taxon1/common/*.c .
752./ln-if-absent ../network/taxon1/taxon2/*.h ../include
753./ln-if-absent ../network/taxon1/taxon2/*.c .
754./ln-if-absent ../network/id0arch/client/*.h ../include
755set: No match.
756make: [copy] Error 1 (ignored)
757./ln-if-absent ../network/id0arch/client/*.c .
758set: No match.
759make: [copy] Error 1 (ignored)
760./ln-if-absent ../network/id1arch/*.h ../include
761./ln-if-absent ../network/id1arch/*.c .
762./ln-if-absent ../network/spell/client/*.h ../include
763set: No match.
764make: [copy] Error 1 (ignored)
765./ln-if-absent ../network/spell/client/*.c .
766set: No match.
767make: [copy] Error 1 (ignored)
768./ln-if-absent ../network/suggest/client/*.h ../include
769./ln-if-absent ../network/suggest/client/*.c .
770./ln-if-absent ../network/blast3/client/*.h ../include
771./ln-if-absent ../network/blast3/client/*.c .
772./ln-if-absent ../network/encrypt/ripem/rsaref/source/*.c .
773set: No match.
774make: [copy] Error 1 (ignored)
775./ln-if-absent ../network/socks/socks.cstc.4.2/lib/*.c .
776./ln-if-absent ../internal/misc/*.c .
777set: No match.
778make: [copy] Error 1 (ignored)
779./ln-if-absent ../internal/misc/*.h ../include
780set: No match.
781make: [copy] Error 1 (ignored)
782./ln-if-absent ../internal/ssparse/*.c .
783set: No match.
784make: [copy] Error 1 (ignored)
785./ln-if-absent ../internal/ssparse/*.h ../include
786set: No match.
787make: [copy] Error 1 (ignored)
788./ln-if-absent ../internal/libparsn/*.c .
789set: No match.
790make: [copy] Error 1 (ignored)
791./ln-if-absent ../internal/libparsn/*.h ../include
792set: No match.
793make: [copy] Error 1 (ignored)
794./ln-if-absent ../internal/smart/smartnet/*.c .
795set: No match.
796make: [copy] Error 1 (ignored)
797./ln-if-absent ../internal/smart/smartnet/*.h ../include
798set: No match.
799make: [copy] Error 1 (ignored)
800./ln-if-absent ../internal/www/*.c .
801set: No match.
802make: [copy] Error 1 (ignored)
803./ln-if-absent ../internal/www/*.h ../include
804set: No match.
805make: [copy] Error 1 (ignored)
806./ln-if-absent ../internal/query/*.c .
807set: No match.
808make: [copy] Error 1 (ignored)
809./ln-if-absent ../internal/query/*.h ../include
810set: No match.
811make: [copy] Error 1 (ignored)
812./ln-if-absent ../network/sybutils/ctlib/*.c .
813set: No match.
814make: [copy] Error 1 (ignored)
815./ln-if-absent ../network/sybutils/ctlib/*.h ../include
816set: No match.
817make: [copy] Error 1 (ignored)
818./ln-if-absent ../network/sybutils/oslib/*.c .
819set: No match.
820make: [copy] Error 1 (ignored)
821./ln-if-absent ../network/sybutils/oslib/*.h ../include
822set: No match.
823make: [copy] Error 1 (ignored)
824./ln-if-absent ../network/sybutils/idloadlib/*.c .
825set: No match.
826make: [copy] Error 1 (ignored)
827./ln-if-absent ../network/sybutils/idloadlib/*.h ../include
828set: No match.
829make: [copy] Error 1 (ignored)
830./ln-if-absent ../network/nsclilib/*.h ../include
831./ln-if-absent ../network/nsclilib/*.c .
832./ln-if-absent ../network/vibnet/*.c .
833./ln-if-absent ../network/vibnet/*.h ../include
834./ln-if-absent ../cdromlib/*.h ../include
835./ln-if-absent ../cdromlib/accentr.c .
836./ln-if-absent ../cdromlib/accutils.c .
837./ln-if-absent ../sequin/*.* .
838./ln-if-absent ../demo/entrez.c .
839./ln-if-absent ../demo/netentcf.c .
840./ln-if-absent ../demo/seqget.c .
841./ln-if-absent ../demo/entrcmd.c .
842./ln-if-absent ../demo/batch.c .
843./ln-if-absent ../demo/nbatch.c .
844./ln-if-absent ../demo/elecpcr.c .
845./ln-if-absent ../demo/fetchent.c .
846./ln-if-absent ../demo/udvmain.c .
847./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c .
848./ln-if-absent ../network/entrez/server/*.* .
849set: No match.
850make: [copy] Error 1 (ignored)
851./ln-if-absent ../network/suggest/server/*.* .
852chmod -R ug+rw,o+r .
853echo Waiting...go
854Waiting...go
855cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" ni_lib_.c
856cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" ni_service.c
857cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" ni_debug.c
858cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" ni_error.c
859rm -f libnetcli.a
860ar cru libnetcli.a ni_lib_.o ni_service.o ni_debug.o ni_error.o
861cp -p libnetcli.a ../lib
862ls -l ../lib/libnetcli.a
863-rw-r--r--   1 coremake ncbi      297544 Jan 31 14:19 ../lib/libnetcli.a
864cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" netentr.c
865cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" netlib.c
866cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" objneten.c
867rm -f libnetentr.a
868ar cru libnetentr.a netentr.o netlib.o objneten.o
869cp -p libnetentr.a ../lib
870ls -l ../lib/libnetentr.a
871-rw-r--r--   1 coremake ncbi      300656 Jan 31 14:20 ../lib/libnetentr.a
872./ln-if-absent accentr.c Naccentr.c
873cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" -D_NETENT_ Naccentr.c
874rm -f libncbiNacc.a
875ar cru libncbiNacc.a Naccentr.o accutils.o
876cp -p libncbiNacc.a ../lib
877ls -l ../lib/libncbiNacc.a
878-rw-r--r--   1 coremake ncbi       86642 Jan 31 14:20 ../lib/libncbiNacc.a
879./ln-if-absent accentr.c Caccentr.c
880cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" -D_NET_AND_CD_ Caccentr.c
881rm -f libncbiCacc.a
882ar cru libncbiCacc.a Caccentr.o accutils.o
883cp -p libncbiCacc.a ../lib
884ls -l ../lib/libncbiCacc.a
885-rw-r--r--   1 coremake ncbi       92234 Jan 31 14:20 ../lib/libncbiCacc.a
886cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" netcnfg.c
887cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" trmlst.c
888cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" docsum.c
889cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
890#define DEL ((Uint1)2)
891------------^
892rm -f libvibnet.a
893ar cru libvibnet.a netcnfg.o trmlst.o docsum.o
894cp -p libvibnet.a ../lib
895ls -l ../lib/libvibnet.a
896-rw-r--r--   1 coremake ncbi      305710 Jan 31 14:20 ../lib/libvibnet.a
897cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" objtax1.c
898cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" taxutil.c
899cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c
900cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c
901cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" parttree.c
902cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" taxcs.c
903rm -f libncbitxc2.a
904ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o
905cp -p libncbitxc2.a ../lib
906ls -l ../lib/libncbitxc2.a
907-rw-r--r--   1 coremake ncbi      190068 Jan 31 14:20 ../lib/libncbitxc2.a
908cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" id1gen.c
909cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" id1arch.c
910cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" accid1.c
911rm -f libncbiid1.a
912ar cru libncbiid1.a id1gen.o id1arch.o accid1.o
913cp -p libncbiid1.a ../lib
914ls -l ../lib/libncbiid1.a
915-rw-r--r--   1 coremake ncbi       64478 Jan 31 14:20 ../lib/libncbiid1.a
916cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" objblst3.c
917cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" netblap3.c
918rm -f libnetblast.a
919ar cru libnetblast.a objblst3.o netblap3.o
920cp -p libnetblast.a ../lib
921ls -l ../lib/libnetblast.a
922-rw-r--r--   1 coremake ncbi      194888 Jan 31 14:20 ../lib/libnetblast.a
923cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c
924cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" medarch.c
925cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" medutil.c
926rm -f libncbimla.a
927ar cru libncbimla.a objmla.o medarch.o medutil.o
928cp -p libncbimla.a ../lib
929ls -l ../lib/libncbimla.a
930-rw-r--r--   1 coremake ncbi      110092 Jan 31 14:20 ../lib/libncbimla.a
931cc -o Psequin -I. -fast -I../include  -L../lib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sequin1.c sequin2.c sequin3.c sequin4.c sequin5.c sequin6.c sequin7.c sequin8.c sequin9.c sequinx.c \
932-lncbicn3d -lncbidesk -lncbimmdb -lncbitxc2 -lncbiid1 -lnetblast -lncbitool -lncbimla \
933-lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibnet -lvibrant -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub  -lm
934cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
935#define DEL ((Uint1)2)
936------------^
937cc: Warning: ../include/asn2ff6.h, line 154: The redefinition of the macro "LAST" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
938#define LAST ( (Uint1)1)
939-------------^
940cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
941#define DEL ((Uint1)2)
942------------^
943cc: Warning: ../include/simutil.h, line 208: The redefinition of the macro "DEL" conflicts with a current definition because the replacement lists differ.  The redefinition is now in effect.
944#define DEL ((Uint1)2)
945------------^
946cc -o netentcf -fast -I../include  -L../lib -DWIN_MOTIF netentcf.c -lvibnet -lncbidesk -lvibrant -lncbitool -lncbicdr -lncbiNacc -lnetentr -lnetcli -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub  -lm
947cc -o Nentrez -fast -I../include  -L../lib -DWIN_MOTIF entrez.c -lvibnet -lncbicn3d -lncbidesk -lncbimmdb -lncbitool -lncbiNacc -lnetentr -lnetcli -lncbiacc -lvibrant -lncbicdr -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub  -lm
948cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" cn3dmain.c
949cc -o Cn3D -fast -I../include  -L../lib -DWIN_MOTIF cn3dmain.o -lvibnet -lncbicn3d -lncbidesk \
950	-lncbimmdb -lncbitool -lncbiNacc -lnetentr -lnetcli \
951	-lvibrant -lncbicdr -lncbiobj -lncbi -non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub  -lm
952cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" udvmain.c
953cc -o udv -fast -I../include  -L../lib -DWIN_MOTIF udvmain.o -lncbiid1 -lvibnet -lncbidesk \
954-lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbitool -lncbiobj -lncbi \
955-non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub  -lm
956cc -fast -c  -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" ddvmain.c
957cc -o ddv -fast -I../include  -L../lib -DWIN_MOTIF ddvmain.o -lncbiid1 -lvibnet -lncbidesk \
958-lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbitool -lncbiobj -lncbi \
959-non_shared -lXm -lXmu -lXt -lX11 -lXext -lSM -lICE -ldnet_stub  -lm
960cc -g -o blastcl3 -fast -I../include  -L../lib -DWIN_MOTIF blastcl3.c -lnetblast -lncbitool -lnetcli -lncbiobj -lncbi -lm
961cc: Warning: File not optimized; use -g3 if both optimization and debug wanted.
962putting date stamp to the file ../VERSION
963*********************************************************
964*The new binaries are located in ./ncbi/build/ directory*
965*********************************************************
966annie|/work/toolbox|509> exit
967exit
968
969script done on Mon Jan 31 14:41:13 2000
970
971If all is correct, you will find newly built executables in
972the directory ./ncbi/build/
973
974Good luck!
975
976
977=======================================================================
978 $Id: readme.unx,v 6.23 2005/07/26 14:40:11 lavr Exp $
979=======================================================================
980