1# -*-Perl-*- Test Harness script for Bioperl
2# $Id: SearchIO_wise.t 11733 2007-10-26 18:22:10Z jason $
3
4use strict;
5
6BEGIN {
7	use Bio::Root::Test;
8
9	test_begin(-tests => 20);
10
11    use_ok('Bio::SearchIO');
12}
13
14my $parser = Bio::SearchIO->new(-file => test_input_file('genewise.out'),
15			    -format   => 'wise',
16			    -wisetype => 'genewise');
17my $result = $parser->next_result;
18my $hit = $result->next_hit;
19is($result->query_name, 'SINFRUP00000067802');
20is($hit->name, 'Scaffold_2042.1');
21
22is($hit->score, 2054.68);
23my $hsp = $hit->next_hsp;
24
25is($hsp->query->start,22265);
26is($hsp->query->end,22396);
27is($hsp->query->strand,1);
28is($hsp->query->score, 2054.68);
29
30is($hsp->hit->start,1);
31is($hsp->hit->end,44);
32is($hsp->hit->strand,0);
33is($hsp->hit->score, 2054.68);
34
35$hsp = $hit->next_hsp;
36
37is($hsp->query->start,24224);
38is($hsp->query->end,24328);
39
40is($hsp->hit->start,45);
41is($hsp->hit->end,79);
42
43$hsp = $hit->next_hsp;
44
45is($hsp->query->start,24471);
46is($hsp->query->end,24513);
47
48is($hsp->hit->start,80);
49is($hsp->hit->end,93);
50