1<?xml version='1.0' encoding='UTF-8' standalone='yes'?> 2<mast version="5.0.1" release="Wed Aug 22 15:26:53 2018 -0700"> 3 <command_line><arg>mast</arg><arg>-oc</arg><arg>results/mast4</arg><arg>-nostatus</arg><arg>meme/meme.crp0.de.oops.txt</arg><arg>common/crp0.s</arg></command_line> 4 <settings strand_handling="combine" max_correlation="0.60" remove_correlated="n" max_seq_evalue="10" adjust_hit="n" max_hit_pvalue="0.0001" max_weak_pvalue="0.0001"/> 5 <alphabet name="DNA" like="dna"> 6 <letter id="A" symbol="A" complement="T" name="Adenine" colour="CC0000"/> 7 <letter id="C" symbol="C" complement="G" name="Cytosine" colour="0000CC"/> 8 <letter id="G" symbol="G" complement="C" name="Guanine" colour="FFB300"/> 9 <letter id="T" symbol="T" aliases="U" complement="A" name="Thymine" colour="008000"/> 10 <letter id="N" symbol="N" aliases="X." equals="ACGT" name="Any base"/> 11 <letter id="V" symbol="V" equals="ACG" name="Not T"/> 12 <letter id="H" symbol="H" equals="ACT" name="Not G"/> 13 <letter id="D" symbol="D" equals="AGT" name="Not C"/> 14 <letter id="B" symbol="B" equals="CGT" name="Not A"/> 15 <letter id="M" symbol="M" equals="AC" name="Amino"/> 16 <letter id="R" symbol="R" equals="AG" name="Purine"/> 17 <letter id="W" symbol="W" equals="AT" name="Weak"/> 18 <letter id="S" symbol="S" equals="CG" name="Strong"/> 19 <letter id="Y" symbol="Y" equals="CT" name="Pyrimidine"/> 20 <letter id="K" symbol="K" equals="GT" name="Keto"/> 21 </alphabet> 22 <background source="--nrdb--" A="0.274262" C="0.22521" G="0.22521" T="0.274262"/> 23 <motif_dbs> 24 <motif_db source="meme/meme.crp0.de.oops.txt" last_mod_date="Wed Jan 24 18:36:51 2018"> 25 <background A="0.304" C="0.196" G="0.196" T="0.304"/> 26 </motif_db> 27 </motif_dbs> 28 <motifs> 29 <motif db="0" id="AHSGYAWWWAAT" alt="MEME-1" length="12" nsites="18" evalue="6.0e-001"> 30 <pos A="163" C="-1081" G="-1081" T="-245"/> 31 <pos A="13" C="50" G="-1081" T="35"/> 32 <pos A="-245" C="118" G="135" T="-1081"/> 33 <pos A="-245" C="18" G="188" T="-1081"/> 34 <pos A="-87" C="135" G="-182" T="-13"/> 35 <pos A="125" C="50" G="-1081" T="-1081"/> 36 <pos A="87" C="-1081" G="-182" T="35"/> 37 <pos A="72" C="-1081" G="-182" T="55"/> 38 <pos A="35" C="-182" G="-1081" T="87"/> 39 <pos A="72" C="18" G="-82" T="-87"/> 40 <pos A="72" C="18" G="18" T="-245"/> 41 <pos A="-245" C="-1081" G="50" T="113"/> 42 </motif> 43 <motif db="0" id="GTGADYDDDNTC" alt="MEME-2" length="12" nsites="18" evalue="9.3e-001"> 44 <pos A="-1081" C="-182" G="209" T="-145"/> 45 <pos A="-145" C="-1081" G="-182" T="145"/> 46 <pos A="-245" C="-1081" G="227" T="-1081"/> 47 <pos A="125" C="50" G="-1081" T="-1081"/> 48 <pos A="35" C="-182" G="77" T="-45"/> 49 <pos A="-245" C="118" G="-23" T="13"/> 50 <pos A="-13" C="-182" G="50" T="35"/> 51 <pos A="35" C="-182" G="50" T="-13"/> 52 <pos A="-13" C="-82" G="18" T="35"/> 53 <pos A="13" C="-23" G="18" T="-13"/> 54 <pos A="-1081" C="-23" G="-23" T="113"/> 55 <pos A="-245" C="218" G="-1081" T="-245"/> 56 </motif> 57 </motifs> 58 <correlations> 59 <correlation idx_a="0" idx_b="1" value="0.13"/> 60 </correlations> 61 <sequence_dbs> 62 <sequence_db source="common/crp0.s" last_mod_date="Tue Jun 20 11:02:46 2017" seq_count="18" residue_count="1890"/> 63 </sequence_dbs> 64 <sequences> 65 <sequence db="0" name="lac" comment="9 80" length="105"> 66 <score strand="both" combined_pvalue="1.30e-05" evalue="0.00023"/> 67 <seg start="1"> 68 <data> 69AACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTG 70 </data> 71 <hit pos="1" idx="0" rc="n" pvalue="3.4e-06" match="++++++++++++"/> 72 <hit pos="15" idx="1" rc="y" pvalue="7.2e-06" match="++ ++++++++"/> 73 </seg> 74 </sequence> 75 <sequence db="0" name="bglr1" comment="76" length="105"> 76 <score strand="both" combined_pvalue="5.42e-04" evalue="0.0098"/> 77 <seg start="76"> 78 <data> 79AACTGTGAGCATGGTCATATTTTTATCAAT 80 </data> 81 <hit pos="80" idx="1" rc="n" pvalue="9.1e-06" match="++++++ ++++"/> 82 </seg> 83 </sequence> 84 <sequence db="0" name="tdc" comment="78" length="105"> 85 <score strand="both" combined_pvalue="2.39e-03" evalue="0.043"/> 86 <seg start="1"> 87 <data> 88GATTTTTATACTTTAACTTGTTGATATTTAAAGGTATTTAATTGTAATAACGATACTCTGGAAAGTATTGAAAGT 89 </data> 90 <hit pos="31" idx="0" rc="n" pvalue="7.8e-05" match="++++ +++++++"/> 91 </seg> 92 <seg start="76"> 93 <data> 94TAATTTGTGAGTGGTCGCACATATCCTGTT 95 </data> 96 <hit pos="82" idx="1" rc="n" pvalue="9.4e-05" match="+++++++++ +"/> 97 </seg> 98 </sequence> 99 <sequence db="0" name="deop2" comment="7 60" length="105"> 100 <score strand="both" combined_pvalue="3.05e-03" evalue="0.055"/> 101 <seg start="1"> 102 <data> 103AGTGAATTATTTGAACCAGATCGCATTACAGTGATGCAAACTTGTAAGTAGATTTCCTTAATTGTGATGTGTATC 104 </data> 105 <hit pos="20" idx="0" rc="n" pvalue="9.0e-05" match="++++++++++++"/> 106 </seg> 107 </sequence> 108 <sequence db="0" name="pbr322" comment="53" length="105"> 109 <score strand="both" combined_pvalue="3.06e-03" evalue="0.055"/> 110 <seg start="1"> 111 <data> 112CTGGCTTAACTATGCGGCATCAGAGCAGATTGTACTGAGAGTGCACCATATGCGGTGTGAAATACCGCACAGATG 113 </data> 114 <hit pos="59" idx="1" rc="y" pvalue="9.4e-05" match="++ +++ +++++"/> 115 </seg> 116 </sequence> 117 <sequence db="0" name="malk" comment="29 61" length="105"> 118 <score strand="both" combined_pvalue="8.04e-03" evalue="0.14"/> 119 <seg start="1"> 120 <data> 121GGAGGAGGCGGGAGGATGAGAACACGGCTTCTGTGAACTAAACCGAGGTCATGTAAGGAATTTCGTGATGTTGCT 122 </data> 123 <hit pos="33" idx="1" rc="n" pvalue="7.1e-05" match="++++++++ + +"/> 124 </seg> 125 </sequence> 126 <sequence db="0" name="tnaa" comment="71 " length="105"> 127 <score strand="both" combined_pvalue="3.85e-02" evalue="0.69"/> 128 </sequence> 129 <sequence db="0" name="male" comment="14" length="105"> 130 <score strand="both" combined_pvalue="5.05e-02" evalue="0.91"/> 131 </sequence> 132 <sequence db="0" name="ara" comment="17 55" length="105"> 133 <score strand="both" combined_pvalue="5.22e-02" evalue="0.94"/> 134 </sequence> 135 <sequence db="0" name="cya" comment="50" length="105"> 136 <score strand="both" combined_pvalue="5.58e-02" evalue="1"/> 137 </sequence> 138 <sequence db="0" name="ompa" comment="48" length="105"> 139 <score strand="both" combined_pvalue="1.17e-01" evalue="2.1"/> 140 </sequence> 141 <sequence db="0" name="ilv" comment="39" length="105"> 142 <score strand="both" combined_pvalue="1.46e-01" evalue="2.6"/> 143 </sequence> 144 <sequence db="0" name="gale" comment="42" length="105"> 145 <score strand="both" combined_pvalue="1.70e-01" evalue="3.1"/> 146 </sequence> 147 <sequence db="0" name="malt" comment="41" length="105"> 148 <score strand="both" combined_pvalue="1.78e-01" evalue="3.2"/> 149 </sequence> 150 <sequence db="0" name="crp" comment="63" length="105"> 151 <score strand="both" combined_pvalue="2.48e-01" evalue="4.5"/> 152 </sequence> 153 <sequence db="0" name="ce1cg" comment="17 61" length="105"> 154 <score strand="both" combined_pvalue="2.68e-01" evalue="4.8"/> 155 </sequence> 156 <sequence db="0" name="trn9cat" comment="1 84" length="105"> 157 <score strand="both" combined_pvalue="3.26e-01" evalue="5.9"/> 158 </sequence> 159 <sequence db="0" name="uxu1" comment="17" length="105"> 160 <score strand="both" combined_pvalue="3.66e-01" evalue="6.6"/> 161 </sequence> 162 </sequences> 163 <runtime host="Timothys-iMac.rd.unr.edu" when="Fri Aug 24 16:48:54 2018" cycles="7712" seconds="0.008"/> 164</mast> 165