1 #ifndef H_twoPassRunPass1
2 #define H_twoPassRunPass1
3 
4 #include "Parameters.h"
5 #include "Genome.h"
6 #include "Transcriptome.h"
7 #include "SjdbClass.h"
8 
9 void twoPassRunPass1(Parameters &P, Genome &genomeMain, Transcriptome *transcriptomeMain, SjdbClass &sjdbLoci);
10 
11 #endif