1 /**
2  * UGENE - Integrated Bioinformatics Tools.
3  * Copyright (C) 2008-2021 UniPro <ugene@unipro.ru>
4  * http://ugene.net
5  *
6  * This program is free software; you can redistribute it and/or
7  * modify it under the terms of the GNU General Public License
8  * as published by the Free Software Foundation; either version 2
9  * of the License, or (at your option) any later version.
10  *
11  * This program is distributed in the hope that it will be useful,
12  * but WITHOUT ANY WARRANTY; without even the implied warranty of
13  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14  * GNU General Public License for more details.
15  *
16  * You should have received a copy of the GNU General Public License
17  * along with this program; if not, write to the Free Software
18  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
19  * MA 02110-1301, USA.
20  */
21 
22 #ifndef _U2_DI_PROPERTIES_SITECON_H_
23 #define _U2_DI_PROPERTIES_SITECON_H_
24 
25 #include <assert.h>
26 
27 #include <QList>
28 #include <QMap>
29 #include <QString>
30 
31 #include <U2Core/DIProperties.h>
32 
33 namespace U2 {
34 
35 class DiPropertySitecon;
36 class DinucleotitePropertyRegistry {
37 public:
38     DinucleotitePropertyRegistry();
39     ~DinucleotitePropertyRegistry();
40 
getProperties()41     QList<DiPropertySitecon *> getProperties() const {
42         return props;
43     }
44 
45 private:
46     void registerProperty(const QString &str);
47     QList<DiPropertySitecon *> props;
48 };
49 
50 class DiPropertySitecon : public DiProperty {
51 public:
52     // todo: default val;
53 
54     QMap<QString, QString> keys;
55     float original[16];
56     float normalized[16];
57     float average;
58     float sdeviation;
59 
getOriginal(char c1,char c2)60     float getOriginal(char c1, char c2) const {
61         return original[index(c1, c2)];
62     }
getNormalized(char c1,char c2)63     float getNormalized(char c1, char c2) const {
64         return normalized[index(c1, c2)];
65     }
66 };
67 
68 }  // namespace U2
69 
70 #endif
71