1<multi-test>
2    <remove-temp-dir url="bwa5"/>
3    <create-temp-dir url="bwa5"/>
4    <run-cmdline
5            task="!common_data_dir!bwa/workflow/bwa.uwl"
6            in="!common_data_dir!reads/e_coli_1000_1.fa"
7            out_dir="!tmp_data_dir!bwa5"
8            ref="!common_data_dir!bwa/index/ecoli.fa"
9            use-miss-prob="false"
10            max-diff="5"
11    />
12    <compare-sam-by-length file1="bwa5/bwa/out.sam" file2="bwa/aln_pattern/max_diff/e_coli_1_max_diff_5.sam"/>
13    <remove-temp-dir url="bwa5"/>
14</multi-test>
15