1<multi-test> 2 <remove-temp-dir url="bwa5"/> 3 <create-temp-dir url="bwa5"/> 4 <run-cmdline 5 task="!common_data_dir!bwa/workflow/bwa.uwl" 6 in="!common_data_dir!reads/e_coli_1000_1.fa" 7 out_dir="!tmp_data_dir!bwa5" 8 ref="!common_data_dir!bwa/index/ecoli.fa" 9 use-miss-prob="false" 10 max-diff="5" 11 /> 12 <compare-sam-by-length file1="bwa5/bwa/out.sam" file2="bwa/aln_pattern/max_diff/e_coli_1_max_diff_5.sam"/> 13 <remove-temp-dir url="bwa5"/> 14</multi-test> 15