1<multi-test>
2    <remove-temp-dir url="bwa_1"/>
3    <create-temp-dir url="bwa_1"/>
4    <load-document index="doc" url="bwa/index1/ecoli.fa" io="local_file" format="fasta"/>
5    <save-document doc="doc" url="bwa_1/ecoli.fa" io="local_file" format="fasta"/>
6    <run-cmdline
7            task="!common_data_dir!bwa/bwa_worker/bwa_aligner.uwl"
8            reference="!tmp_data_dir!bwa_1/ecoli.fa"
9            out-dir="!tmp_data_dir!bwa_1"
10            reads="!common_data_dir!e_coli/e_coli_reads/e_coli_1_1.fastq;e_coli/e_coli_reads/e_coli_1_2.fastq"
11    />
12    <compare-sam-by-length file1="bwa_1/bwa/out.sam" file2="bwa/bwa_worker/result.sam"/>
13    <remove-temp-dir url="bwa_1"/>
14</multi-test>