1<multi-test> 2 <remove-temp-dir url="bwa_1"/> 3 <create-temp-dir url="bwa_1"/> 4 <load-document index="doc" url="bwa/index1/ecoli.fa" io="local_file" format="fasta"/> 5 <save-document doc="doc" url="bwa_1/ecoli.fa" io="local_file" format="fasta"/> 6 <run-cmdline 7 task="!common_data_dir!bwa/bwa_worker/bwa_aligner.uwl" 8 reference="!tmp_data_dir!bwa_1/ecoli.fa" 9 out-dir="!tmp_data_dir!bwa_1" 10 reads="!common_data_dir!e_coli/e_coli_reads/e_coli_1_1.fastq;e_coli/e_coli_reads/e_coli_1_2.fastq" 11 /> 12 <compare-sam-by-length file1="bwa_1/bwa/out.sam" file2="bwa/bwa_worker/result.sam"/> 13 <remove-temp-dir url="bwa_1"/> 14</multi-test>