1<multi-test>
2    <remove-temp-dir url="genome_aligner_3"/>
3    <create-temp-dir url="genome_aligner_3"/>
4    <run-cmdline
5            task="!common_data_dir!genome_aligner/workflow/genome-aligner.uwl"
6            in="!common_data_dir!reads/e_coli_1000.fa"
7            out-dir="!tmp_data_dir!genome_aligner_3"
8            ref="!common_data_dir!bwa/index/ecoli.fa"
9            abs-mis-enabled="false"
10            abs-mis="0"
11            percent-mis="5"
12            rev-compl="true"
13            best-mode="false"
14            omit-count="10"
15    />
16    <compare-sam-by-length file1="genome_aligner_3/genome_aligner/out.sam" file2="genome_aligner/workflow/data_3.sam"/>
17    <remove-temp-dir url="genome_aligner_3"/>
18</multi-test>
19