16 sequence; length of alignment 76 2alifold output 3 31 54 1 99.7% 0.011 CG:1 GU:3 AU:1 4 34 51 0 99.9% 0.003 CG:6 5 36 49 0 99.9% 0.003 CG:6 6 33 52 0 99.8% 0.006 AU:6 7 32 53 0 99.6% 0.011 AU:6 8 30 55 0 99.5% 0.016 AU:6 9 35 50 1 99.8% 0.007 UA:5 10 37 48 0 99.1% 0.035 AU:6 11 29 56 0 98.7% 0.053 CG:6 12 16 70 0 98.5% 0.073 CG:6 13 15 71 0 98.5% 0.080 CG:6 14 14 72 0 95.2% 0.153 CG:1 UG:2 UA:3 15 38 47 0 96.4% 0.141 UA:6 16 18 67 0 93.8% 0.330 CG:6 17 19 66 0 93.0% 0.545 UA:6 18 20 65 0 85.5% 0.777 UA:6 19 17 69 0 81.1% 0.822 UA:6 20 17 68 1 17.4% 1.169 UA:5 + 21 22 63 1 8.9% 0.965 UA:5 + 22 23 60 0 5.8% 0.834 GC:5 GU:1 + 23 23 62 2 6.2% 0.846 GU:4 + 24 22 61 1 5.4% 0.826 UA:5 + 25 23 64 0 2.2% 0.661 GC:3 GU:3 + 26 5 20 0 1.1% 0.457 GU:1 AU:5 + 27 6 19 0 1.1% 0.348 GU:1 AU:5 + 28 20 66 0 2.0% 0.660 UA:6 + 29 20 67 0 2.0% 0.637 UG:6 + 30 40 46 0 1.9% 0.231 GU:6 + 31 22 65 1 2.2% 0.885 UA:5 + 32 21 66 1 2.1% 0.531 UA:5 + 33 19 68 1 2.0% 0.712 UA:5 + 34 41 45 0 0.3% 0.095 CG:2 UG:4 + 35 60 67 0 0.2% 0.400 CG:5 UG:1 + 36 2 23 0 1.2% 0.594 CG:6 + 37 1 24 0 1.2% 0.161 GC:6 + 38 21 65 1 1.7% 0.580 UA:5 + 39 3 22 1 1.2% 0.618 GU:1 AU:4 + 40 14 71 0 0.1% 0.108 CG:1 UG:5 + 41 19 67 0 1.1% 0.504 UG:6 + 42 25 58 0 0.8% 0.170 AU:6 + 43 4 21 1 1.2% 0.327 AU:5 + 44 26 58 0 0.6% 0.150 AU:6 + 45 39 44 1 0.5% 0.120 GU:1 UA:4 + 46 38 45 0 0.2% 0.123 UG:6 + 47 27 71 0 0.2% 0.074 CG:6 + 48 28 70 0 0.2% 0.089 CG:6 + 49 15 70 0 0.1% 0.076 CG:6 + 50 28 56 0 0.1% 0.067 CG:6 + 51 23 28 0 0.1% 0.531 GC:6 + 52 37 46 0 0.1% 0.105 AU:6 + 53 39 45 2 0.4% 0.148 UG:4 + 54 21 63 1 0.3% 0.476 UA:5 + 55 39 47 2 0.3% 0.140 UA:4 + 56 25 62 2 0.1% 0.245 AU:4 + 57.............(((((((........((((((((((........))))))))))........))).)))).... 58