1General properties
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3
4| :ref:`gmx energy <gmx energy>`, :ref:`gmx traj <gmx traj>`
5| To analyze some or all *energies* and other properties, such as *total
6  pressure*, *pressure tensor*, *density*, *box-volume* and *box-sizes*,
7  use the program :ref:`gmx energy <gmx energy>`. A choice can be made from a
8  list a set of energies, like potential, kinetic or total energy, or
9  individual contributions, like Lennard-Jones or dihedral energies.
10
11The *center-of-mass velocity*, defined as
12
13.. math:: {\bf v}_{com} = {1 \over M} \sum_{i=1}^N m_i {\bf v}_i
14          :label: eqncomvelocity
15
16with :math:`M = \sum_{i=1}^N m_i` the total mass of the system, can be
17monitored in time by the program :ref:`gmx traj <gmx traj>` ``-com -ov``. It is however
18recommended to remove the center-of-mass velocity every step (see
19chapter :ref:`algorithms`)!
20