general - OpenGrok cross reference for /dports/biology/bamutil/bamUtil-1.0.15/libStatGen/general/

Name		Date	Size	#Lines	LOC
..		08-Mar-2021	-
obj/	H	03-May-2022	-
test/	H	03-May-2022	-	5,979	4,199
BaseAsciiMap.cpp	H A D	08-Mar-2021	7.2 KiB	146	83
BaseAsciiMap.h	H A D	08-Mar-2021	6.7 KiB	206	109
BaseQualityHelper.cpp	H A D	08-Mar-2021	1.2 KiB	39	12
BaseQualityHelper.h	H A D	08-Mar-2021	1,008	38	12
BaseUtilities.cpp	H A D	08-Mar-2021	2.6 KiB	109	67
BaseUtilities.h	H A D	08-Mar-2021	1.8 KiB	56	16
BasicHash.cpp	H A D	08-Mar-2021	3.7 KiB	168	111
BasicHash.h	H A D	08-Mar-2021	2.2 KiB	108	69
BgzfFileType.cpp	H A D	08-Mar-2021	2.5 KiB	80	42
BgzfFileType.h	H A D	08-Mar-2021	4.9 KiB	180	101
BgzfFileTypeRecovery.cpp	H A D	08-Mar-2021	16.7 KiB	601	361
BgzfFileTypeRecovery.h	H A D	08-Mar-2021	2.7 KiB	100	40
CSG_MD5.h	H A D	08-Mar-2021	12.4 KiB	404	229
CharBuffer.cpp	H A D	08-Mar-2021	3.9 KiB	166	99
CharBuffer.h	H A D	08-Mar-2021	1.9 KiB	73	32
Chromosome.cpp	H A D	08-Mar-2021	1.6 KiB	49	41
Chromosome.h	H A D	08-Mar-2021	1 KiB	33	28
Cigar.cpp	H A D	08-Mar-2021	14.2 KiB	506	331
Cigar.h	H A D	08-Mar-2021	19.1 KiB	547	256
CigarRoller.cpp	H A D	08-Mar-2021	8.3 KiB	332	215
CigarRoller.h	H A D	08-Mar-2021	6.4 KiB	174	41
Constant.h	H A D	08-Mar-2021	2 KiB	61	29
Error.cpp	H A D	08-Mar-2021	1.6 KiB	71	36
Error.h	H A D	08-Mar-2021	985	35	6
ErrorHandler.cpp	H A D	08-Mar-2021	1.7 KiB	62	34
ErrorHandler.h	H A D	08-Mar-2021	1.4 KiB	49	17
FileType.cpp	H A D	08-Mar-2021	1.4 KiB	51	15
FileType.h	H A D	08-Mar-2021	2.6 KiB	85	24
FortranFormat.cpp	H A D	08-Mar-2021	8.8 KiB	373	235
FortranFormat.h	H A D	08-Mar-2021	2.7 KiB	100	36
Generic.cpp	H A D	08-Mar-2021	1.4 KiB	67	29
Generic.h	H A D	08-Mar-2021	5.7 KiB	244	154
GenomeSequence.cpp	H A D	08-Mar-2021	45.5 KiB	1,533	1,054
GenomeSequence.h	H A D	08-Mar-2021	19.8 KiB	559	251
GenomeSequenceHelpers.h	H A D	08-Mar-2021	4.9 KiB	170	111
GenotypeLists.cpp	H A D	08-Mar-2021	15.6 KiB	486	330
GenotypeLists.h	H A D	08-Mar-2021	1.9 KiB	61	28
GreedyTupleAligner.h	H A D	08-Mar-2021	9.5 KiB	303	191
GzipFileType.cpp	H A D	08-Mar-2021	1.5 KiB	48	22
GzipFileType.h	H A D	08-Mar-2021	4 KiB	158	81
GzipHeader.cpp	H A D	08-Mar-2021	2.9 KiB	120	60
GzipHeader.h	H A D	08-Mar-2021	1.9 KiB	74	38
Hash.cpp	H A D	08-Mar-2021	4.6 KiB	154	103
Hash.h	H A D	08-Mar-2021	974	27	5
IndexBase.cpp	H A D	08-Mar-2021	7.2 KiB	242	147
IndexBase.h	H A D	08-Mar-2021	4.9 KiB	166	100
InplaceMerge.cpp	H A D	08-Mar-2021	1.3 KiB	52	24
InplaceMerge.h	H A D	08-Mar-2021	2.7 KiB	85	42
Input.cpp	H A D	08-Mar-2021	3.8 KiB	159	120
Input.h	H A D	08-Mar-2021	1.3 KiB	35	13
InputFile.cpp	H A D	08-Mar-2021	11.7 KiB	438	309
InputFile.h	H A D	08-Mar-2021	28.7 KiB	800	414
IntArray.cpp	H A D	08-Mar-2021	8.3 KiB	426	318
IntArray.h	H A D	08-Mar-2021	5.2 KiB	259	195
IntHash.cpp	H A D	08-Mar-2021	3.7 KiB	169	111
IntHash.h	H A D	08-Mar-2021	2.8 KiB	126	69
LICENSE.twister	H A D	08-Mar-2021	1.8 KiB	38	28
LongHash.h	H A D	08-Mar-2021	6.5 KiB	292	212
LongInt.h	H A D	08-Mar-2021	5.1 KiB	273	192
LongLongCounter.cpp	H A D	08-Mar-2021	1.4 KiB	60	33
LongLongCounter.h	H A D	08-Mar-2021	1,019	36	12
Makefile	H A D	08-Mar-2021	2.6 KiB	124	100
Makefile.depends	H A D	08-Mar-2021	30.5 KiB	481	476
MapFunction.cpp	H A D	08-Mar-2021	1.3 KiB	44	20
MapFunction.h	H A D	08-Mar-2021	903	25	5
MathConstant.h	H A D	08-Mar-2021	2 KiB	81	50
MathMatrix.cpp	H A D	08-Mar-2021	16.4 KiB	749	568
MathMatrix.h	H A D	08-Mar-2021	5.6 KiB	263	194
MathVector.cpp	H A D	08-Mar-2021	13.5 KiB	686	488
MathVector.h	H A D	08-Mar-2021	6.4 KiB	314	218
MemoryAllocators.cpp	H A D	08-Mar-2021	5 KiB	260	162
MemoryAllocators.h	H A D	08-Mar-2021	2.7 KiB	103	55
MemoryInfo.cpp	H A D	08-Mar-2021	1.3 KiB	38	16
MemoryInfo.h	H A D	08-Mar-2021	860	26	5
MemoryMap.cpp	H A D	08-Mar-2021	8.5 KiB	377	298
MemoryMap.h	H A D	08-Mar-2021	9.7 KiB	234	49
MemoryMapArray.cpp	H A D	08-Mar-2021	4.6 KiB	189	156
MemoryMapArray.h	H A D	08-Mar-2021	10.7 KiB	437	297
MiniDeflate.cpp	H A D	08-Mar-2021	10.4 KiB	392	297
MiniDeflate.h	H A D	08-Mar-2021	3.8 KiB	103	31
NonOverlapRegions.cpp	H A D	08-Mar-2021	7.2 KiB	255	154
NonOverlapRegions.h	H A D	08-Mar-2021	4.2 KiB	110	35
PackedVector.h	H A D	08-Mar-2021	3.4 KiB	127	78
Parameters.cpp	H A D	08-Mar-2021	22.7 KiB	930	735
Parameters.h	H A D	08-Mar-2021	10 KiB	401	281
Pedigree.cpp	H A D	08-Mar-2021	32.4 KiB	956	732
Pedigree.h	H A D	08-Mar-2021	5.5 KiB	155	86
PedigreeAlleleFreq.cpp	H A D	08-Mar-2021	7.9 KiB	260	168
PedigreeAlleleFreq.h	H A D	08-Mar-2021	1.2 KiB	36	10
PedigreeAlleles.h	H A D	08-Mar-2021	3.8 KiB	179	130
PedigreeDescription.cpp	H A D	08-Mar-2021	29.4 KiB	942	720
PedigreeDescription.h	H A D	08-Mar-2021	2.6 KiB	91	49
PedigreeFamily.cpp	H A D	08-Mar-2021	8.4 KiB	296	149
PedigreeFamily.h	H A D	08-Mar-2021	2 KiB	65	31
PedigreeGlobals.cpp	H A D	08-Mar-2021	25.8 KiB	901	681
PedigreeGlobals.h	H A D	08-Mar-2021	5.9 KiB	217	143
PedigreeLoader.cpp	H A D	08-Mar-2021	22.7 KiB	651	505
PedigreePerson.cpp	H A D	08-Mar-2021	5.5 KiB	231	173
PedigreePerson.h	H A D	08-Mar-2021	3.4 KiB	154	106
PedigreeTrim.cpp	H A D	08-Mar-2021	5.8 KiB	188	118
PedigreeTwin.cpp	H A D	08-Mar-2021	6.2 KiB	181	117
Performance.h	H A D	08-Mar-2021	1.8 KiB	67	31
PhoneHome.cpp	H A D	08-Mar-2021	5.9 KiB	226	162
PhoneHome.h	H A D	08-Mar-2021	2.8 KiB	82	30
QuickIndex.cpp	H A D	08-Mar-2021	5.6 KiB	252	167
QuickIndex.h	H A D	08-Mar-2021	1.6 KiB	60	35
Random.cpp	H A D	08-Mar-2021	10.5 KiB	410	242
Random.h	H A D	08-Mar-2021	4.4 KiB	134	38
ReferenceSequence.cpp	H A D	08-Mar-2021	4.6 KiB	158	115
ReferenceSequence.h	H A D	08-Mar-2021	13.6 KiB	416	248
ReusableVector.h	H A D	08-Mar-2021	3.9 KiB	144	77
STLUtilities.cpp	H A D	08-Mar-2021	2.3 KiB	77	37
STLUtilities.h	H A D	08-Mar-2021	9 KiB	362	232
SimpleStats.h	H A D	08-Mar-2021	2.3 KiB	105	62
SmithWaterman.cpp	H A D	08-Mar-2021	8.8 KiB	211	102
SmithWaterman.h	H A D	08-Mar-2021	22 KiB	762	481
Sort.cpp	H A D	08-Mar-2021	9.1 KiB	375	244
Sort.h	H A D	08-Mar-2021	1.2 KiB	36	12
StatGenStatus.cpp	H A D	08-Mar-2021	5 KiB	209	130
StatGenStatus.h	H A D	08-Mar-2021	4.2 KiB	114	41
String.cpp	H A D	08-Mar-2021	1.6 KiB	63	34
StringAlias.cpp	H A D	08-Mar-2021	2.1 KiB	96	60
StringAlias.h	H A D	08-Mar-2021	1.2 KiB	45	19
StringArray.cpp	H A D	08-Mar-2021	10.1 KiB	455	375
StringArray.h	H A D	08-Mar-2021	3.5 KiB	144	80
StringBasics.cpp	H A D	08-Mar-2021	31.9 KiB	1,617	1,304
StringBasics.h	H A D	08-Mar-2021	10.6 KiB	442	331
StringHash.cpp	H A D	08-Mar-2021	15.9 KiB	737	561
StringHash.h	H A D	08-Mar-2021	8.8 KiB	417	312
StringMap.cpp	H A D	08-Mar-2021	11.2 KiB	573	427
StringMap.h	H A D	08-Mar-2021	3.6 KiB	166	122
Tabix.cpp	H A D	08-Mar-2021	7 KiB	259	156
Tabix.h	H A D	08-Mar-2021	2.4 KiB	87	41
TrimSequence.h	H A D	08-Mar-2021	4.9 KiB	140	56
UncompressedFileType.cpp	H A D	08-Mar-2021	1.9 KiB	66	37
UncompressedFileType.h	H A D	08-Mar-2021	5.5 KiB	215	142
UnitTest.h	H A D	08-Mar-2021	1.4 KiB	47	24
glfHandler.cpp	H A D	08-Mar-2021	9.1 KiB	400	289
glfHandler.h	H A D	08-Mar-2021	3.8 KiB	150	89