1{bin}/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.del-snp.vcf | ../sort-csq | {bin}/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' 2echo 3{bin}/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-del.vcf | ../sort-csq | {bin}/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' 4echo 5{bin}/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-ins.vcf | ../sort-csq | {bin}/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' 6echo 7{bin}/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-snp.vcf | ../sort-csq | {bin}/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' 8echo 9{bin}/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff single.vcf | ../sort-csq | {bin}/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' 10