1 2<a name="output.1"></a> 3<h3>Output files for usage example </h3> 4<p><h3>File: eecoli.cut</h3> 5<table width="90%"><tr><td bgcolor="#CCFFCC"> 6<pre> 7#Species: Escherichia coli K12 8#Division: gbbct 9#Release: CUTG146 10#CdsCount: 5045 11 12#Coding GC 51.81% 13#1st letter GC 58.93% 14#2nd letter GC 40.69% 15#3rd letter GC 55.80% 16 17#Codon AA Fraction Frequency Number 18GCA A 0.214 20.299 32456 19GCC A 0.269 25.493 40761 20GCG A 0.355 33.631 53773 21GCT A 0.162 15.354 24549 22TGC C 0.554 6.431 10283 23TGT C 0.446 5.180 8282 24GAC D 0.372 19.047 30454 25GAT D 0.628 32.219 51514 26GAA E 0.690 39.570 63268 27GAG E 0.310 17.782 28431 28TTC F 0.425 16.580 26510 29TTT F 0.575 22.423 35852 30GGA G 0.108 7.925 12671 31GGC G 0.402 29.403 47013 32GGG G 0.150 10.994 17578 33GGT G 0.340 24.838 39714 34CAC H 0.429 9.712 15529 35CAT H 0.571 12.903 20630 36ATA I 0.072 4.290 6860 37ATC I 0.419 24.999 39971 38ATT I 0.510 30.427 48649 39AAA K 0.767 33.618 53752 40AAG K 0.233 10.198 16305 41CTA L 0.036 3.860 6172 42CTC L 0.104 11.045 17660 43CTG L 0.496 52.821 84455 44CTT L 0.104 11.051 17670 45TTA L 0.131 13.913 22246 46TTG L 0.129 13.727 21948 47ATG M 1.000 27.778 44414 48AAC N 0.551 21.611 34554 49AAT N 0.449 17.633 28193 50CCA P 0.192 8.524 13629 51CCC P 0.125 5.531 8843 52CCG P 0.524 23.235 37150 53CCT P 0.159 7.045 11265 54CAA Q 0.349 15.474 24742 55CAG Q 0.651 28.832 46100 56AGA R 0.037 2.056 3287 57AGG R 0.022 1.216 1944 58CGA R 0.064 3.542 5663 59CGC R 0.398 22.005 35184 60CGG R 0.098 5.391 8619 61CGT R 0.381 21.020 33609 62AGC S 0.277 16.031 25632 63AGT S 0.151 8.723 13947 64TCA S 0.123 7.137 11411 65TCC S 0.148 8.591 13736 66TCG S 0.154 8.916 14256 67TCT S 0.147 8.507 13601 68ACA T 0.131 7.035 11248 69ACC T 0.435 23.362 37354 70ACG T 0.268 14.371 22977 71ACT T 0.166 8.922 14265 72GTA V 0.154 10.883 17400 73GTC V 0.215 15.221 24336 74GTG V 0.371 26.253 41976 75GTT V 0.260 18.394 29410 76TGG W 1.000 15.303 24468 77TAC Y 0.429 12.243 19576 78TAT Y 0.571 16.326 26103 79TAA * 0.642 2.025 3237 80TAG * 0.072 0.228 365 81TGA * 0.286 0.902 1443 82</pre> 83</td></tr></table><p> 84