1Index a GCG formatted database using b+tree indices
2Version: EMBOSS:6.6.0.0
3
4   Standard (Mandatory) qualifiers:
5  [-dbname]            string     Basename for index files (Any string from 2
6                                  to 19 characters, matching regular
7                                  expression /[A-z][A-z0-9_]+/)
8  [-dbresource]        string     Resource name (Any string from 2 to 19
9                                  characters, matching regular expression
10                                  /[A-z][A-z0-9_]+/)
11   -idformat           menu       [SWISS] Entry format (Values: EMBL (EMBL);
12                                  SWISS (Swiss-Prot, SpTrEMBL, TrEMBLnew);
13                                  GENBANK (Genbank, DDBJ); PIR (NBRF))
14   -directory          directory  [.] Database directory
15   -filenames          string     [*.seq] Wildcard database filename (Any
16                                  string)
17   -fields             menu       [id,acc] Index fields (Values: id (ID); acc
18                                  (Accession number); sv (Sequence Version and
19                                  GI); des (Description); key (Keywords); org
20                                  (Taxonomy))
21   -[no]compressed     boolean    [Y] Compressed index files
22   -outfile            outfile    [*.dbxgcg] General log output file
23
24   Additional (Optional) qualifiers: (none)
25   Advanced (Unprompted) qualifiers:
26   -release            string     [0.0] Release number (Any string up to 9
27                                  characters)
28   -date               string     [00/00/00] Index date (Date string dd/mm/yy)
29   -exclude            string     Wildcard filename(s) to exclude (Any string)
30   -statistics         boolean    [N] Report I/O statistics for each input
31                                  file
32   -indexoutdir        outdir     [.] Index file output directory
33
34   Associated qualifiers:
35
36   "-directory" associated qualifiers
37   -extension          string     Default file extension
38
39   "-indexoutdir" associated qualifiers
40   -extension          string     Default file extension
41
42   "-outfile" associated qualifiers
43   -odirectory         string     Output directory
44
45   General qualifiers:
46   -auto               boolean    Turn off prompts
47   -stdout             boolean    Write first file to standard output
48   -filter             boolean    Read first file from standard input, write
49                                  first file to standard output
50   -options            boolean    Prompt for standard and additional values
51   -debug              boolean    Write debug output to program.dbg
52   -verbose            boolean    Report some/full command line options
53   -help               boolean    Report command line options and exit. More
54                                  information on associated and general
55                                  qualifiers can be found with -help -verbose
56   -warning            boolean    Report warnings
57   -error              boolean    Report errors
58   -fatal              boolean    Report fatal errors
59   -die                boolean    Report dying program messages
60   -version            boolean    Report version number and exit
61
62