1\begin{footnotesize} 2\begin{quote} 3\begin{verbatim} 4# ../bin/ssearch36 -q -w 80 ../seq/mgstm1.aa a 5SSEARCH performs a Smith-Waterman search 6 version 36.3.6 June, 2013(preload9) 7Please cite: 8 T. F. Smith and M. S. Waterman, (1981) J. Mol. Biol. 147:195-197; 9 W.R. Pearson (1991) Genomics 11:635-650 10Query: ../seq/mgstm1.aa 11 1>>>mGSTM1 mouse glutathione transferase M1 - 218 aa 12Library: PIR1 Annotated (rel. 66) 13 5121825 residues in 13143 sequences 14 15Statistics: Expectation_n fit: rho(ln(x))= 7.4729+/-0.000484; mu= 2.0282+/- 0.027 16 mean_var=56.9651+/-10.957, 0's: 9 Z-trim(119.4): 17 B-trim: 67 in 1/62 17 Lambda= 0.169930 18 statistics sampled from 13135 (13143) to 13135 sequences 19Algorithm: Smith-Waterman (SSE2, Michael Farrar 2006) (7.2 Nov 2010) 20Parameters: BL50 matrix (15:-5), open/ext: -10/-2 21 Scan time: 3.820 22The best scores are: s-w bits E(13143) 23sp|P08010|GSTM2_RAT Glutathione S-transferase Mu 2; GST 4-4; GT ( 218) 1248 312.0 7.7e-86 24sp|P04906|GSTP1_RAT Glutathione S-transferase P; Chain 7; GST - ( 210) 344 90.4 3.8e-19 25sp|P00502|GSTA1_RAT Glutathione S-transferase alpha-1; GST 1-1 ( 222) 237 64.1 3.2e-11 26sp|P14942|GSTA4_RAT Glutathione S-transferase alpha-4; GST 8-8 ( 222) 179 49.9 6.1e-07 27sp|P12653|GSTF1_MAIZE Glutathione S-transferase 1; GST class-pi ( 214) 120 35.4 0.013 28sp|P04907|GSTF3_MAIZE Glutathione S-transferase 3; GST class-pi ( 222) 115 34.2 0.032 29sp|P20432|GSTT1_DROME Glutathione S-transferase 1-1; DDT-dehydr ( 209) 100 30.5 0.38 30sp|P11277|SPTB1_HUMAN Spectrin beta chain, erythrocytic; Beta- (2137) 108 31.6 1.9 31... (alignments deleted) ... 32>>sp|P14942|GSTA4_RAT Glutathione S-transferase alpha-4; GST 8-8; (222 aa) 33 s-w opt: 179 Z-score: 231.0 bits: 49.9 E(13143): 6.1e-07 34Smith-Waterman score: 179; 25.6% identity (54.5% similar) in 211 aa overlap (5-207:7-207) 35 10 20 30 40 50 60 70 36mGSTM MPMILGYWNVRGLTHPIRMLLEYTDSSYDEKRYTMGDAPDFDRSQWLNEKF-KLG-LDFPNLPYL-IDGSHKITQSNA 37 : :.. :: . :: :: . ..: .: ... ::. : : : : ..: . ::: .::. : 38sp|P14 MEVKPKLYYFQGRGRMESIRWLLATAGVEFEE---------EFLETREQYEKLQKDGCLLFGQVPLVEIDG-MLLTQTRA 39 10 20 30 40 50 60 70 40 80 90 100 110 120 130 140 150 41mGSTM ILRYLARKHHLDGETEEERIRADIVENQVMDTRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYSEF--LGK---RPWFAG 42 :: ::: :..: :. .::.: :. . ..: :..: .. ::.. : . : . . : . : . ...: 43sp|P14 ILSYLAAKYNLYGKDLKERVRIDMYADGTQDLMMMIIGAPFKAPQEKEESLALAVKRAKNRYFPVFEKILKDHGEAFLVG 44 80 90 100 110 120 130 140 150 45 160 170 180 190 200 210 46mGSTM DKVTYVDFLAYDILDQYRMFEPKCLDAFPNLRDFLARFEGLKKISAYMKSSRYIATPIFSKMAHWSNK 47 ......:. . . . . :. :: :. : .:. .. :. ... . : 48sp|P14 NQLSWADIQLLEAILMVEEVSAPVLSDFPLLQAFKTRISNIPTIKKFLQPGSQRKPPPDGHYVDVVRTVLKF 49 160 170 180 190 200 210 220 50... (alignments deleted) ... 51218 residues in 1 query sequences 525121825 residues in 13143 library sequences 53 Tcomplib [36.3.6 May, 2013(preload9)] (4 proc in memory [0G]) 54 start: Thu Jun 6 11:23:28 2013 done: Thu Jun 6 11:23:30 2013 55 Total Scan time: 3.820 Total Display time: 0.130 56Function used was SSEARCH [36.3.6 May, 2013(preload9)] 57\end{verbatim} 58\end{quote} 59\end{footnotesize} 60\vspace{-4.0ex} 61