1##fileformat=VCFv4.2 2##FILTER=<ID=broad_PoN_v2,Description="Broad panel of normals"> 3##FILTER=<ID=common_in_exac,Description="Common germline variant"> 4##FILTER=<ID=singleton_caller,Description="Called by only one tool"> 5##FILTER=<ID=ndp,Description="Insufficient depth in normal"> 6##FILTER=<ID=oxog,Description="oxog"> 7##FILTER=<ID=indelocator_low_support,Description="indelocator_low_support"> 8##FILTER=<ID=NonExonic,Description="non-exonic"> 9##FILTER=<ID=StrandBias,Description="strand bias artifact"> 10##FILTER=<ID=badseq,Description="badseq"> 11##FILTER=<ID=bitgt,Description="not in called region of all callers"> 12##FILTER=<ID=contest,Description="contamination"> 13##FILTER=<ID=gapfiller,Description="gapfiller"> 14##FILTER=<ID=indelocator_low_support,Description="indelocator_low_support"> 15##FILTER=<ID=native_wga_mix,Description="native_wga_mix"> 16##FILTER=<ID=nonpreferredpair,Description="nonpreferredpair"> 17##FILTER=<ID=pcadontuse,Description="pcadontuse"> 18##FILTER=<ID=singleton_caller,Description="called by only one caller"> 19##FILTER=<ID=wga,Description="whole genone amplification sample"> 20##INFO=<ID=RNA,Number=0,Type=Flag,Description="Validated by RNA sequencing"> 21##INFO=<ID=TARG,Number=0,Type=Flag,Description="Validated by targeted sequencing"> 22##INFO=<ID=WGS,Number=0,Type=Flag,Description="Validated by whole-genome sequencing"> 23##INFO=<ID=CENTERS,Number=.,Type=String,Description="Callers making a call"> 24##INFO=<ID=NREF,Number=1,Type=Integer,Description="MC3 exome tumor ref count"> 25##INFO=<ID=NALT,Number=1,Type=Integer,Description="MC3 exome tumor alt count"> 26##contig=<ID=1,length=249250621,assembly=GRCh37> 27##contig=<ID=2,length=243199373,assembly=GRCh37> 28##contig=<ID=3,length=198022430,assembly=GRCh37> 29##contig=<ID=4,length=191154276,assembly=GRCh37> 30##contig=<ID=5,length=180915260,assembly=GRCh37> 31##contig=<ID=6,length=171115067,assembly=GRCh37> 32##contig=<ID=7,length=159138663,assembly=GRCh37> 33##contig=<ID=8,length=146364022,assembly=GRCh37> 34##contig=<ID=9,length=141213431,assembly=GRCh37> 35##contig=<ID=10,length=135534747,assembly=GRCh37> 36##contig=<ID=11,length=135006516,assembly=GRCh37> 37##contig=<ID=12,length=133851895,assembly=GRCh37> 38##contig=<ID=13,length=115169878,assembly=GRCh37> 39##contig=<ID=14,length=107349540,assembly=GRCh37> 40##contig=<ID=15,length=102531392,assembly=GRCh37> 41##contig=<ID=16,length=90354753,assembly=GRCh37> 42##contig=<ID=17,length=81195210,assembly=GRCh37> 43##contig=<ID=18,length=78077248,assembly=GRCh37> 44##contig=<ID=19,length=59128983,assembly=GRCh37> 45##contig=<ID=20,length=63025520,assembly=GRCh37> 46##contig=<ID=21,length=48129895,assembly=GRCh37> 47##contig=<ID=22,length=51304566,assembly=GRCh37> 48##contig=<ID=X,length=155270560,assembly=GRCh37> 49##contig=<ID=Y,length=59373566,assembly=GRCh37> 50##contig=<ID=MT,length=16569,assembly=GRCh37> 51##contig=<ID=GL000207.1,length=4262,assembly=GRCh37> 52##contig=<ID=GL000226.1,length=15008,assembly=GRCh37> 53##contig=<ID=GL000229.1,length=19913,assembly=GRCh37> 54##contig=<ID=GL000231.1,length=27386,assembly=GRCh37> 55##contig=<ID=GL000210.1,length=27682,assembly=GRCh37> 56##contig=<ID=GL000239.1,length=33824,assembly=GRCh37> 57##contig=<ID=GL000235.1,length=34474,assembly=GRCh37> 58##contig=<ID=GL000201.1,length=36148,assembly=GRCh37> 59##contig=<ID=GL000247.1,length=36422,assembly=GRCh37> 60##contig=<ID=GL000245.1,length=36651,assembly=GRCh37> 61##contig=<ID=GL000197.1,length=37175,assembly=GRCh37> 62##contig=<ID=GL000203.1,length=37498,assembly=GRCh37> 63##contig=<ID=GL000246.1,length=38154,assembly=GRCh37> 64##contig=<ID=GL000249.1,length=38502,assembly=GRCh37> 65##contig=<ID=GL000196.1,length=38914,assembly=GRCh37> 66##contig=<ID=GL000248.1,length=39786,assembly=GRCh37> 67##contig=<ID=GL000244.1,length=39929,assembly=GRCh37> 68##contig=<ID=GL000238.1,length=39939,assembly=GRCh37> 69##contig=<ID=GL000202.1,length=40103,assembly=GRCh37> 70##contig=<ID=GL000234.1,length=40531,assembly=GRCh37> 71##contig=<ID=GL000232.1,length=40652,assembly=GRCh37> 72##contig=<ID=GL000206.1,length=41001,assembly=GRCh37> 73##contig=<ID=GL000240.1,length=41933,assembly=GRCh37> 74##contig=<ID=GL000236.1,length=41934,assembly=GRCh37> 75##contig=<ID=GL000241.1,length=42152,assembly=GRCh37> 76##contig=<ID=GL000243.1,length=43341,assembly=GRCh37> 77##contig=<ID=GL000242.1,length=43523,assembly=GRCh37> 78##contig=<ID=GL000230.1,length=43691,assembly=GRCh37> 79##contig=<ID=GL000237.1,length=45867,assembly=GRCh37> 80##contig=<ID=GL000233.1,length=45941,assembly=GRCh37> 81##contig=<ID=GL000204.1,length=81310,assembly=GRCh37> 82##contig=<ID=GL000198.1,length=90085,assembly=GRCh37> 83##contig=<ID=GL000208.1,length=92689,assembly=GRCh37> 84##contig=<ID=GL000191.1,length=106433,assembly=GRCh37> 85##contig=<ID=GL000227.1,length=128374,assembly=GRCh37> 86##contig=<ID=GL000228.1,length=129120,assembly=GRCh37> 87##contig=<ID=GL000214.1,length=137718,assembly=GRCh37> 88##contig=<ID=GL000221.1,length=155397,assembly=GRCh37> 89##contig=<ID=GL000209.1,length=159169,assembly=GRCh37> 90##contig=<ID=GL000218.1,length=161147,assembly=GRCh37> 91##contig=<ID=GL000220.1,length=161802,assembly=GRCh37> 92##contig=<ID=GL000213.1,length=164239,assembly=GRCh37> 93##contig=<ID=GL000211.1,length=166566,assembly=GRCh37> 94##contig=<ID=GL000199.1,length=169874,assembly=GRCh37> 95##contig=<ID=GL000217.1,length=172149,assembly=GRCh37> 96##contig=<ID=GL000216.1,length=172294,assembly=GRCh37> 97##contig=<ID=GL000215.1,length=172545,assembly=GRCh37> 98##contig=<ID=GL000205.1,length=174588,assembly=GRCh37> 99##contig=<ID=GL000219.1,length=179198,assembly=GRCh37> 100##contig=<ID=GL000224.1,length=179693,assembly=GRCh37> 101##contig=<ID=GL000223.1,length=180455,assembly=GRCh37> 102##contig=<ID=GL000195.1,length=182896,assembly=GRCh37> 103##contig=<ID=GL000212.1,length=186858,assembly=GRCh37> 104##contig=<ID=GL000222.1,length=186861,assembly=GRCh37> 105##contig=<ID=GL000200.1,length=187035,assembly=GRCh37> 106##contig=<ID=GL000193.1,length=189789,assembly=GRCh37> 107##contig=<ID=GL000194.1,length=191469,assembly=GRCh37> 108##contig=<ID=GL000225.1,length=211173,assembly=GRCh37> 109##contig=<ID=GL000192.1,length=547496,assembly=GRCh37> 110##contig=<ID=NC_007605,length=171823,assembly=NC_007605.1> 111#CHROM POS ID REF ALT QUAL FILTER INFO 1121 26691436 . G T . StrandBias;singleton_caller CENTERS=MUTECT;NREF=73;NALT=4 1131 85560187 . G T . StrandBias;singleton_caller CENTERS=MUTECT;NREF=360;NALT=7 1141 142813243 . C G . NonExonic;broad_PoN_v2;singleton_caller CENTERS=VARSCANS;NREF=87;NALT=11 1151 145116147 . T TA . broad_PoN_v2;indelocator_low_support;ndp;singleton_caller CENTERS=INDELOCATOR;NREF=6;NALT=3 1161 147120061 . T C . PASS RNA;TARG;WGS;CENTERS=MUTECT,RADIA,SOMATICSNIPER,MUSE,VARSCANS;NREF=61;NALT=78 1171 155020578 . A T . PASS TARG;WGS;CENTERS=RADIA,MUTECT,MUSE,VARSCANS;NREF=218;NALT=28 1181 160144388 . C T . PASS TARG;WGS;CENTERS=MUTECT,RADIA,SOMATICSNIPER,MUSE,VARSCANS;NREF=38;NALT=42 1191 168165865 . G A . PASS RNA;WGS;CENTERS=MUTECT,MUSE;NREF=732;NALT=30 1201 169510389 . G A . broad_PoN_v2;singleton_caller CENTERS=MUTECT;NREF=548;NALT=5 1211 177250096 . G GC . broad_PoN_v2;singleton_caller CENTERS=PINDEL;NREF=19;NALT=3 12217 1840792 . G A . PASS TARG;WGS;CENTERS=MUTECT,MUSE;NREF=16;NALT=3 12317 7560698 . TA T . indelocator_low_support;ndp;singleton_caller CENTERS=INDELOCATOR;NREF=4;NALT=2 12417 9632427 . A AT . broad_PoN_v2;singleton_caller WGS;CENTERS=VARSCANI;NREF=39;NALT=5 12517 27050993 . CCA C . broad_PoN_v2;singleton_caller CENTERS=INDELOCATOR;NREF=125;NALT=7 12617 38182543 . C G . PASS RNA;WGS;CENTERS=MUTECT,MUSE;NREF=409;NALT=15 12717 45664593 . C T . broad_PoN_v2;common_in_exac;singleton_caller CENTERS=VARSCANS;NREF=63;NALT=7 128