1##fileformat=VCFv4.2 2##ALT=<ID=NON_REF,Description="Represents any possible alternative allele at this location"> 3##FILTER=<ID=LowQual,Description="Low quality"> 4##FILTER=<ID=PASS,Description="All filters passed"> 5##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed"> 6##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)"> 7##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> 8##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> 9##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum DP observed within the GVCF block"> 10##FORMAT=<ID=PGT,Number=1,Type=String,Description="Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another"> 11##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group"> 12##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification"> 13##FORMAT=<ID=SB,Number=4,Type=Integer,Description="Per-sample component statistics which comprise the Fisher's Exact Test to detect strand bias."> 14##GATKCommandLine.HaplotypeCaller=<ID=HaplotypeCaller,Version=3.5-0-g36282e4,Date="Sat Jun 18 23:52:15 UTC 2016",Epoch=1466293935858,CommandLineOptions="analysis_type=HaplotypeCaller input_file=[broad-gotc-prod-cromwell-execution/PairedEndSingleSampleWorkflow/27402c9a-4187-4228-89f1-415027c5dfe0/call-GatherBamFiles/NWD242235.bam] showFullBamList=false read_buffer_size=null phone_home=AWS gatk_key=null tag=NA read_filter=[OverclippedRead] disable_read_filter=[] intervals=[broad-references/hg38/v0/scattered_calling_intervals/temp_0038_of_50/scattered.interval_list] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=broad-references/hg38/v0/Homo_sapiens_assembly38.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=500 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=LINEAR variant_index_parameter=128000 reference_window_stop=0 logging_level=INFO log_to_file=null help=false version=false likelihoodCalculationEngine=PairHMM heterogeneousKmerSizeResolution=COMBO_MIN dbsnp=(RodBinding name= source=UNBOUND) dontTrimActiveRegions=false maxDiscARExtension=25 maxGGAARExtension=300 paddingAroundIndels=150 paddingAroundSNPs=20 comp=[] annotation=[StrandBiasBySample] excludeAnnotation=[ChromosomeCounts, FisherStrand, StrandOddsRatio, QualByDepth] group=[Standard, StandardHCAnnotation] debug=false useFilteredReadsForAnnotations=false emitRefConfidence=GVCF bamOutput=null bamWriterType=CALLED_HAPLOTYPES disableOptimizations=false annotateNDA=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 standard_min_confidence_threshold_for_calling=-0.0 standard_min_confidence_threshold_for_emitting=-0.0 max_alternate_alleles=3 input_prior=[] sample_ploidy=2 genotyping_mode=DISCOVERY alleles=(RodBinding name= source=UNBOUND) contamination_fraction_to_filter=0.00468 contamination_fraction_per_sample_file=null p_nonref_model=null exactcallslog=null output_mode=EMIT_VARIANTS_ONLY allSitePLs=true gcpHMM=10 pair_hmm_implementation=VECTOR_LOGLESS_CACHING pair_hmm_sub_implementation=ENABLE_ALL always_load_vector_logless_PairHMM_lib=false phredScaledGlobalReadMismappingRate=45 noFpga=false sample_name=null kmerSize=[10, 25] dontIncreaseKmerSizesForCycles=false allowNonUniqueKmersInRef=false numPruningSamples=1 recoverDanglingHeads=false doNotRecoverDanglingBranches=false minDanglingBranchLength=4 consensus=false maxNumHaplotypesInPopulation=128 errorCorrectKmers=false minPruning=2 debugGraphTransformations=false allowCyclesInKmerGraphToGeneratePaths=false graphOutput=null kmerLengthForReadErrorCorrection=25 minObservationsForKmerToBeSolid=20 GVCFGQBands=[1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 70, 80, 90, 99] indelSizeToEliminateInRefModel=10 min_base_quality_score=10 includeUmappedReads=false useAllelesTrigger=false doNotRunPhysicalPhasing=false keepRG=null justDetermineActiveRegions=false dontGenotype=false dontUseSoftClippedBases=false captureAssemblyFailureBAM=false errorCorrectReads=false pcr_indel_model=CONSERVATIVE maxReadsInRegionPerSample=10000 minReadsPerAlignmentStart=10 mergeVariantsViaLD=false activityProfileOut=null activeRegionOut=null activeRegionIn=null activeRegionExtension=null forceActive=false activeRegionMaxSize=null bandPassSigma=null maxProbPropagationDistance=50 activeProbabilityThreshold=0.002 filter_is_too_short_value=30 do_not_require_softclips_both_ends=false min_mapping_quality_score=20 filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false"> 15##GATKCommandLine.ReblockGVCF=<ID=ReblockGVCF,Version=3.8-1-3-g73284ff,Date="Fri May 17 13:29:23 EDT 2019",Epoch=1558114163767,CommandLineOptions="analysis_type=ReblockGVCF input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=[chr20] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/seq/references/Homo_sapiens_assembly38/v0/Homo_sapiens_assembly38.fasta nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null use_jdk_deflater=false use_jdk_inflater=false disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=(RodBinding name=variant source=NWD242235.96926da8-749c-474e-9d0f-142a4f39fb3b.g.vcf.gz) includeNonVariantSites=true annotateNDA=false useNewAFCalculator=false heterozygosity=0.001 indel_heterozygosity=1.25E-4 heterozygosity_stdev=0.01 standard_min_confidence_threshold_for_calling=10.0 standard_min_confidence_threshold_for_emitting=30.0 max_alternate_alleles=6 max_genotype_count=1024 max_num_PL_values=100 input_prior=[] sample_ploidy=2 annotation=[DP, MQ, ReadPosRankSum, MQRankSum, RAW_MQ] group=[StandardAnnotation] GVCFGQBands=[20, 100] drop_low_qual_variants=true RGQ_threshold_to_drop=20.0 do_qual_score_approximation=true dbsnp=(RodBinding name= source=UNBOUND) filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false"> 16##GATKCommandLine=<ID=SelectVariants,CommandLine="SelectVariants --output /Users/gauthier/workspaces/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/noGTCount.sample1.chr20snippet.vcf --variant /Users/gauthier/workspaces/gatk/src/test/resources/org/broadinstitute/hellbender/tools/walkers/GnarlyGenotyper/noGTCount.sample1.vcf --intervals chr20:60000-160000 --invertSelect false --exclude-non-variants false --exclude-filtered false --preserve-alleles false --remove-unused-alternates false --restrict-alleles-to ALL --keep-original-ac false --keep-original-dp false --mendelian-violation false --invert-mendelian-violation false --mendelian-violation-qual-threshold 0.0 --select-random-fraction 0.0 --remove-fraction-genotypes 0.0 --fully-decode false --max-indel-size 2147483647 --min-indel-size 0 --max-filtered-genotypes 2147483647 --min-filtered-genotypes 0 --max-fraction-filtered-genotypes 1.0 --min-fraction-filtered-genotypes 0.0 --max-nocall-number 2147483647 --max-nocall-fraction 1.0 --set-filtered-gt-to-nocall false --allow-nonoverlapping-command-line-samples false --suppress-reference-path false --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --QUIET false --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays --disable-tool-default-read-filters false",Version="4.1.1.0-SNAPSHOT",Date="July 10, 2019 2:58:55 PM EDT"> 17##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed"> 18##INFO=<ID=AC_adj,Number=A,Type=Integer,Description="Allele count for each ALT, adjusted to represent high quality genotypes only"> 19##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed"> 20##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> 21##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities"> 22##INFO=<ID=ClippingRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref number of hard clipped bases"> 23##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered"> 24##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval"> 25##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity"> 26##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias"> 27##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality"> 28##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities"> 29##INFO=<ID=MQ_DP,Number=1,Type=Integer,Description="Depth over variant samples for better MQ calculation"> 30##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth"> 31##INFO=<ID=QUALapprox,Number=1,Type=Integer,Description="Sum of PL[0] values; used to approximate the QUAL score"> 32##INFO=<ID=RAW_GT_COUNT,Number=3,Type=Integer,Description="Counts of genotypes w.r.t. the reference allele: 0/0, 0/*, */*, i.e. all alts lumped together; for use in calculating excess heterozygosity"> 33##INFO=<ID=RAW_MQ,Number=1,Type=Float,Description="Raw data for RMS Mapping Quality"> 34##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias"> 35##INFO=<ID=SB_TABLE,Number=4,Type=Integer,Description="Forward/reverse read counts for strand bias tests"> 36##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias"> 37##INFO=<ID=VarDP,Number=1,Type=Integer,Description="(informative) depth over variant genotypes"> 38##contig=<ID=chr1,length=248956422> 39##contig=<ID=chr2,length=242193529> 40##contig=<ID=chr3,length=198295559> 41##contig=<ID=chr4,length=190214555> 42##contig=<ID=chr5,length=181538259> 43##contig=<ID=chr6,length=170805979> 44##contig=<ID=chr7,length=159345973> 45##contig=<ID=chr8,length=145138636> 46##contig=<ID=chr9,length=138394717> 47##contig=<ID=chr10,length=133797422> 48##contig=<ID=chr11,length=135086622> 49##contig=<ID=chr12,length=133275309> 50##contig=<ID=chr13,length=114364328> 51##contig=<ID=chr14,length=107043718> 52##contig=<ID=chr15,length=101991189> 53##contig=<ID=chr16,length=90338345> 54##contig=<ID=chr17,length=83257441> 55##contig=<ID=chr18,length=80373285> 56##contig=<ID=chr19,length=58617616> 57##contig=<ID=chr20,length=64444167> 58##contig=<ID=chr21,length=46709983> 59##contig=<ID=chr22,length=50818468> 60##contig=<ID=chrX,length=156040895> 61##contig=<ID=chrY,length=57227415> 62##contig=<ID=chrM,length=16569> 63##contig=<ID=chr1_KI270706v1_random,length=175055> 64##contig=<ID=chr1_KI270707v1_random,length=32032> 65##contig=<ID=chr1_KI270708v1_random,length=127682> 66##contig=<ID=chr1_KI270709v1_random,length=66860> 67##contig=<ID=chr1_KI270710v1_random,length=40176> 68##contig=<ID=chr1_KI270711v1_random,length=42210> 69##contig=<ID=chr1_KI270712v1_random,length=176043> 70##contig=<ID=chr1_KI270713v1_random,length=40745> 71##contig=<ID=chr1_KI270714v1_random,length=41717> 72##contig=<ID=chr2_KI270715v1_random,length=161471> 73##contig=<ID=chr2_KI270716v1_random,length=153799> 74##contig=<ID=chr3_GL000221v1_random,length=155397> 75##contig=<ID=chr4_GL000008v2_random,length=209709> 76##contig=<ID=chr5_GL000208v1_random,length=92689> 77##contig=<ID=chr9_KI270717v1_random,length=40062> 78##contig=<ID=chr9_KI270718v1_random,length=38054> 79##contig=<ID=chr9_KI270719v1_random,length=176845> 80##contig=<ID=chr9_KI270720v1_random,length=39050> 81##contig=<ID=chr11_KI270721v1_random,length=100316> 82##contig=<ID=chr14_GL000009v2_random,length=201709> 83##contig=<ID=chr14_GL000225v1_random,length=211173> 84##contig=<ID=chr14_KI270722v1_random,length=194050> 85##contig=<ID=chr14_GL000194v1_random,length=191469> 86##contig=<ID=chr14_KI270723v1_random,length=38115> 87##contig=<ID=chr14_KI270724v1_random,length=39555> 88##contig=<ID=chr14_KI270725v1_random,length=172810> 89##contig=<ID=chr14_KI270726v1_random,length=43739> 90##contig=<ID=chr15_KI270727v1_random,length=448248> 91##contig=<ID=chr16_KI270728v1_random,length=1872759> 92##contig=<ID=chr17_GL000205v2_random,length=185591> 93##contig=<ID=chr17_KI270729v1_random,length=280839> 94##contig=<ID=chr17_KI270730v1_random,length=112551> 95##contig=<ID=chr22_KI270731v1_random,length=150754> 96##contig=<ID=chr22_KI270732v1_random,length=41543> 97##contig=<ID=chr22_KI270733v1_random,length=179772> 98##contig=<ID=chr22_KI270734v1_random,length=165050> 99##contig=<ID=chr22_KI270735v1_random,length=42811> 100##contig=<ID=chr22_KI270736v1_random,length=181920> 101##contig=<ID=chr22_KI270737v1_random,length=103838> 102##contig=<ID=chr22_KI270738v1_random,length=99375> 103##contig=<ID=chr22_KI270739v1_random,length=73985> 104##contig=<ID=chrY_KI270740v1_random,length=37240> 105##contig=<ID=chrUn_KI270302v1,length=2274> 106##contig=<ID=chrUn_KI270304v1,length=2165> 107##contig=<ID=chrUn_KI270303v1,length=1942> 108##contig=<ID=chrUn_KI270305v1,length=1472> 109##contig=<ID=chrUn_KI270322v1,length=21476> 110##contig=<ID=chrUn_KI270320v1,length=4416> 111##contig=<ID=chrUn_KI270310v1,length=1201> 112##contig=<ID=chrUn_KI270316v1,length=1444> 113##contig=<ID=chrUn_KI270315v1,length=2276> 114##contig=<ID=chrUn_KI270312v1,length=998> 115##contig=<ID=chrUn_KI270311v1,length=12399> 116##contig=<ID=chrUn_KI270317v1,length=37690> 117##contig=<ID=chrUn_KI270412v1,length=1179> 118##contig=<ID=chrUn_KI270411v1,length=2646> 119##contig=<ID=chrUn_KI270414v1,length=2489> 120##contig=<ID=chrUn_KI270419v1,length=1029> 121##contig=<ID=chrUn_KI270418v1,length=2145> 122##contig=<ID=chrUn_KI270420v1,length=2321> 123##contig=<ID=chrUn_KI270424v1,length=2140> 124##contig=<ID=chrUn_KI270417v1,length=2043> 125##contig=<ID=chrUn_KI270422v1,length=1445> 126##contig=<ID=chrUn_KI270423v1,length=981> 127##contig=<ID=chrUn_KI270425v1,length=1884> 128##contig=<ID=chrUn_KI270429v1,length=1361> 129##contig=<ID=chrUn_KI270442v1,length=392061> 130##contig=<ID=chrUn_KI270466v1,length=1233> 131##contig=<ID=chrUn_KI270465v1,length=1774> 132##contig=<ID=chrUn_KI270467v1,length=3920> 133##contig=<ID=chrUn_KI270435v1,length=92983> 134##contig=<ID=chrUn_KI270438v1,length=112505> 135##contig=<ID=chrUn_KI270468v1,length=4055> 136##contig=<ID=chrUn_KI270510v1,length=2415> 137##contig=<ID=chrUn_KI270509v1,length=2318> 138##contig=<ID=chrUn_KI270518v1,length=2186> 139##contig=<ID=chrUn_KI270508v1,length=1951> 140##contig=<ID=chrUn_KI270516v1,length=1300> 141##contig=<ID=chrUn_KI270512v1,length=22689> 142##contig=<ID=chrUn_KI270519v1,length=138126> 143##contig=<ID=chrUn_KI270522v1,length=5674> 144##contig=<ID=chrUn_KI270511v1,length=8127> 145##contig=<ID=chrUn_KI270515v1,length=6361> 146##contig=<ID=chrUn_KI270507v1,length=5353> 147##contig=<ID=chrUn_KI270517v1,length=3253> 148##contig=<ID=chrUn_KI270529v1,length=1899> 149##contig=<ID=chrUn_KI270528v1,length=2983> 150##contig=<ID=chrUn_KI270530v1,length=2168> 151##contig=<ID=chrUn_KI270539v1,length=993> 152##contig=<ID=chrUn_KI270538v1,length=91309> 153##contig=<ID=chrUn_KI270544v1,length=1202> 154##contig=<ID=chrUn_KI270548v1,length=1599> 155##contig=<ID=chrUn_KI270583v1,length=1400> 156##contig=<ID=chrUn_KI270587v1,length=2969> 157##contig=<ID=chrUn_KI270580v1,length=1553> 158##contig=<ID=chrUn_KI270581v1,length=7046> 159##contig=<ID=chrUn_KI270579v1,length=31033> 160##contig=<ID=chrUn_KI270589v1,length=44474> 161##contig=<ID=chrUn_KI270590v1,length=4685> 162##contig=<ID=chrUn_KI270584v1,length=4513> 163##contig=<ID=chrUn_KI270582v1,length=6504> 164##contig=<ID=chrUn_KI270588v1,length=6158> 165##contig=<ID=chrUn_KI270593v1,length=3041> 166##contig=<ID=chrUn_KI270591v1,length=5796> 167##contig=<ID=chrUn_KI270330v1,length=1652> 168##contig=<ID=chrUn_KI270329v1,length=1040> 169##contig=<ID=chrUn_KI270334v1,length=1368> 170##contig=<ID=chrUn_KI270333v1,length=2699> 171##contig=<ID=chrUn_KI270335v1,length=1048> 172##contig=<ID=chrUn_KI270338v1,length=1428> 173##contig=<ID=chrUn_KI270340v1,length=1428> 174##contig=<ID=chrUn_KI270336v1,length=1026> 175##contig=<ID=chrUn_KI270337v1,length=1121> 176##contig=<ID=chrUn_KI270363v1,length=1803> 177##contig=<ID=chrUn_KI270364v1,length=2855> 178##contig=<ID=chrUn_KI270362v1,length=3530> 179##contig=<ID=chrUn_KI270366v1,length=8320> 180##contig=<ID=chrUn_KI270378v1,length=1048> 181##contig=<ID=chrUn_KI270379v1,length=1045> 182##contig=<ID=chrUn_KI270389v1,length=1298> 183##contig=<ID=chrUn_KI270390v1,length=2387> 184##contig=<ID=chrUn_KI270387v1,length=1537> 185##contig=<ID=chrUn_KI270395v1,length=1143> 186##contig=<ID=chrUn_KI270396v1,length=1880> 187##contig=<ID=chrUn_KI270388v1,length=1216> 188##contig=<ID=chrUn_KI270394v1,length=970> 189##contig=<ID=chrUn_KI270386v1,length=1788> 190##contig=<ID=chrUn_KI270391v1,length=1484> 191##contig=<ID=chrUn_KI270383v1,length=1750> 192##contig=<ID=chrUn_KI270393v1,length=1308> 193##contig=<ID=chrUn_KI270384v1,length=1658> 194##contig=<ID=chrUn_KI270392v1,length=971> 195##contig=<ID=chrUn_KI270381v1,length=1930> 196##contig=<ID=chrUn_KI270385v1,length=990> 197##contig=<ID=chrUn_KI270382v1,length=4215> 198##contig=<ID=chrUn_KI270376v1,length=1136> 199##contig=<ID=chrUn_KI270374v1,length=2656> 200##contig=<ID=chrUn_KI270372v1,length=1650> 201##contig=<ID=chrUn_KI270373v1,length=1451> 202##contig=<ID=chrUn_KI270375v1,length=2378> 203##contig=<ID=chrUn_KI270371v1,length=2805> 204##contig=<ID=chrUn_KI270448v1,length=7992> 205##contig=<ID=chrUn_KI270521v1,length=7642> 206##contig=<ID=chrUn_GL000195v1,length=182896> 207##contig=<ID=chrUn_GL000219v1,length=179198> 208##contig=<ID=chrUn_GL000220v1,length=161802> 209##contig=<ID=chrUn_GL000224v1,length=179693> 210##contig=<ID=chrUn_KI270741v1,length=157432> 211##contig=<ID=chrUn_GL000226v1,length=15008> 212##contig=<ID=chrUn_GL000213v1,length=164239> 213##contig=<ID=chrUn_KI270743v1,length=210658> 214##contig=<ID=chrUn_KI270744v1,length=168472> 215##contig=<ID=chrUn_KI270745v1,length=41891> 216##contig=<ID=chrUn_KI270746v1,length=66486> 217##contig=<ID=chrUn_KI270747v1,length=198735> 218##contig=<ID=chrUn_KI270748v1,length=93321> 219##contig=<ID=chrUn_KI270749v1,length=158759> 220##contig=<ID=chrUn_KI270750v1,length=148850> 221##contig=<ID=chrUn_KI270751v1,length=150742> 222##contig=<ID=chrUn_KI270752v1,length=27745> 223##contig=<ID=chrUn_KI270753v1,length=62944> 224##contig=<ID=chrUn_KI270754v1,length=40191> 225##contig=<ID=chrUn_KI270755v1,length=36723> 226##contig=<ID=chrUn_KI270756v1,length=79590> 227##contig=<ID=chrUn_KI270757v1,length=71251> 228##contig=<ID=chrUn_GL000214v1,length=137718> 229##contig=<ID=chrUn_KI270742v1,length=186739> 230##contig=<ID=chrUn_GL000216v2,length=176608> 231##contig=<ID=chrUn_GL000218v1,length=161147> 232##contig=<ID=chr1_KI270762v1_alt,length=354444> 233##contig=<ID=chr1_KI270766v1_alt,length=256271> 234##contig=<ID=chr1_KI270760v1_alt,length=109528> 235##contig=<ID=chr1_KI270765v1_alt,length=185285> 236##contig=<ID=chr1_GL383518v1_alt,length=182439> 237##contig=<ID=chr1_GL383519v1_alt,length=110268> 238##contig=<ID=chr1_GL383520v2_alt,length=366580> 239##contig=<ID=chr1_KI270764v1_alt,length=50258> 240##contig=<ID=chr1_KI270763v1_alt,length=911658> 241##contig=<ID=chr1_KI270759v1_alt,length=425601> 242##contig=<ID=chr1_KI270761v1_alt,length=165834> 243##contig=<ID=chr2_KI270770v1_alt,length=136240> 244##contig=<ID=chr2_KI270773v1_alt,length=70887> 245##contig=<ID=chr2_KI270774v1_alt,length=223625> 246##contig=<ID=chr2_KI270769v1_alt,length=120616> 247##contig=<ID=chr2_GL383521v1_alt,length=143390> 248##contig=<ID=chr2_KI270772v1_alt,length=133041> 249##contig=<ID=chr2_KI270775v1_alt,length=138019> 250##contig=<ID=chr2_KI270771v1_alt,length=110395> 251##contig=<ID=chr2_KI270768v1_alt,length=110099> 252##contig=<ID=chr2_GL582966v2_alt,length=96131> 253##contig=<ID=chr2_GL383522v1_alt,length=123821> 254##contig=<ID=chr2_KI270776v1_alt,length=174166> 255##contig=<ID=chr2_KI270767v1_alt,length=161578> 256##contig=<ID=chr3_JH636055v2_alt,length=173151> 257##contig=<ID=chr3_KI270783v1_alt,length=109187> 258##contig=<ID=chr3_KI270780v1_alt,length=224108> 259##contig=<ID=chr3_GL383526v1_alt,length=180671> 260##contig=<ID=chr3_KI270777v1_alt,length=173649> 261##contig=<ID=chr3_KI270778v1_alt,length=248252> 262##contig=<ID=chr3_KI270781v1_alt,length=113034> 263##contig=<ID=chr3_KI270779v1_alt,length=205312> 264##contig=<ID=chr3_KI270782v1_alt,length=162429> 265##contig=<ID=chr3_KI270784v1_alt,length=184404> 266##contig=<ID=chr4_KI270790v1_alt,length=220246> 267##contig=<ID=chr4_GL383528v1_alt,length=376187> 268##contig=<ID=chr4_KI270787v1_alt,length=111943> 269##contig=<ID=chr4_GL000257v2_alt,length=586476> 270##contig=<ID=chr4_KI270788v1_alt,length=158965> 271##contig=<ID=chr4_GL383527v1_alt,length=164536> 272##contig=<ID=chr4_KI270785v1_alt,length=119912> 273##contig=<ID=chr4_KI270789v1_alt,length=205944> 274##contig=<ID=chr4_KI270786v1_alt,length=244096> 275##contig=<ID=chr5_KI270793v1_alt,length=126136> 276##contig=<ID=chr5_KI270792v1_alt,length=179043> 277##contig=<ID=chr5_KI270791v1_alt,length=195710> 278##contig=<ID=chr5_GL383532v1_alt,length=82728> 279##contig=<ID=chr5_GL949742v1_alt,length=226852> 280##contig=<ID=chr5_KI270794v1_alt,length=164558> 281##contig=<ID=chr5_GL339449v2_alt,length=1612928> 282##contig=<ID=chr5_GL383530v1_alt,length=101241> 283##contig=<ID=chr5_KI270796v1_alt,length=172708> 284##contig=<ID=chr5_GL383531v1_alt,length=173459> 285##contig=<ID=chr5_KI270795v1_alt,length=131892> 286##contig=<ID=chr6_GL000250v2_alt,length=4672374> 287##contig=<ID=chr6_KI270800v1_alt,length=175808> 288##contig=<ID=chr6_KI270799v1_alt,length=152148> 289##contig=<ID=chr6_GL383533v1_alt,length=124736> 290##contig=<ID=chr6_KI270801v1_alt,length=870480> 291##contig=<ID=chr6_KI270802v1_alt,length=75005> 292##contig=<ID=chr6_KB021644v2_alt,length=185823> 293##contig=<ID=chr6_KI270797v1_alt,length=197536> 294##contig=<ID=chr6_KI270798v1_alt,length=271782> 295##contig=<ID=chr7_KI270804v1_alt,length=157952> 296##contig=<ID=chr7_KI270809v1_alt,length=209586> 297##contig=<ID=chr7_KI270806v1_alt,length=158166> 298##contig=<ID=chr7_GL383534v2_alt,length=119183> 299##contig=<ID=chr7_KI270803v1_alt,length=1111570> 300##contig=<ID=chr7_KI270808v1_alt,length=271455> 301##contig=<ID=chr7_KI270807v1_alt,length=126434> 302##contig=<ID=chr7_KI270805v1_alt,length=209988> 303##contig=<ID=chr8_KI270818v1_alt,length=145606> 304##contig=<ID=chr8_KI270812v1_alt,length=282736> 305##contig=<ID=chr8_KI270811v1_alt,length=292436> 306##contig=<ID=chr8_KI270821v1_alt,length=985506> 307##contig=<ID=chr8_KI270813v1_alt,length=300230> 308##contig=<ID=chr8_KI270822v1_alt,length=624492> 309##contig=<ID=chr8_KI270814v1_alt,length=141812> 310##contig=<ID=chr8_KI270810v1_alt,length=374415> 311##contig=<ID=chr8_KI270819v1_alt,length=133535> 312##contig=<ID=chr8_KI270820v1_alt,length=36640> 313##contig=<ID=chr8_KI270817v1_alt,length=158983> 314##contig=<ID=chr8_KI270816v1_alt,length=305841> 315##contig=<ID=chr8_KI270815v1_alt,length=132244> 316##contig=<ID=chr9_GL383539v1_alt,length=162988> 317##contig=<ID=chr9_GL383540v1_alt,length=71551> 318##contig=<ID=chr9_GL383541v1_alt,length=171286> 319##contig=<ID=chr9_GL383542v1_alt,length=60032> 320##contig=<ID=chr9_KI270823v1_alt,length=439082> 321##contig=<ID=chr10_GL383545v1_alt,length=179254> 322##contig=<ID=chr10_KI270824v1_alt,length=181496> 323##contig=<ID=chr10_GL383546v1_alt,length=309802> 324##contig=<ID=chr10_KI270825v1_alt,length=188315> 325##contig=<ID=chr11_KI270832v1_alt,length=210133> 326##contig=<ID=chr11_KI270830v1_alt,length=177092> 327##contig=<ID=chr11_KI270831v1_alt,length=296895> 328##contig=<ID=chr11_KI270829v1_alt,length=204059> 329##contig=<ID=chr11_GL383547v1_alt,length=154407> 330##contig=<ID=chr11_JH159136v1_alt,length=200998> 331##contig=<ID=chr11_JH159137v1_alt,length=191409> 332##contig=<ID=chr11_KI270827v1_alt,length=67707> 333##contig=<ID=chr11_KI270826v1_alt,length=186169> 334##contig=<ID=chr12_GL877875v1_alt,length=167313> 335##contig=<ID=chr12_GL877876v1_alt,length=408271> 336##contig=<ID=chr12_KI270837v1_alt,length=40090> 337##contig=<ID=chr12_GL383549v1_alt,length=120804> 338##contig=<ID=chr12_KI270835v1_alt,length=238139> 339##contig=<ID=chr12_GL383550v2_alt,length=169178> 340##contig=<ID=chr12_GL383552v1_alt,length=138655> 341##contig=<ID=chr12_GL383553v2_alt,length=152874> 342##contig=<ID=chr12_KI270834v1_alt,length=119498> 343##contig=<ID=chr12_GL383551v1_alt,length=184319> 344##contig=<ID=chr12_KI270833v1_alt,length=76061> 345##contig=<ID=chr12_KI270836v1_alt,length=56134> 346##contig=<ID=chr13_KI270840v1_alt,length=191684> 347##contig=<ID=chr13_KI270839v1_alt,length=180306> 348##contig=<ID=chr13_KI270843v1_alt,length=103832> 349##contig=<ID=chr13_KI270841v1_alt,length=169134> 350##contig=<ID=chr13_KI270838v1_alt,length=306913> 351##contig=<ID=chr13_KI270842v1_alt,length=37287> 352##contig=<ID=chr14_KI270844v1_alt,length=322166> 353##contig=<ID=chr14_KI270847v1_alt,length=1511111> 354##contig=<ID=chr14_KI270845v1_alt,length=180703> 355##contig=<ID=chr14_KI270846v1_alt,length=1351393> 356##contig=<ID=chr15_KI270852v1_alt,length=478999> 357##contig=<ID=chr15_KI270851v1_alt,length=263054> 358##contig=<ID=chr15_KI270848v1_alt,length=327382> 359##contig=<ID=chr15_GL383554v1_alt,length=296527> 360##contig=<ID=chr15_KI270849v1_alt,length=244917> 361##contig=<ID=chr15_GL383555v2_alt,length=388773> 362##contig=<ID=chr15_KI270850v1_alt,length=430880> 363##contig=<ID=chr16_KI270854v1_alt,length=134193> 364##contig=<ID=chr16_KI270856v1_alt,length=63982> 365##contig=<ID=chr16_KI270855v1_alt,length=232857> 366##contig=<ID=chr16_KI270853v1_alt,length=2659700> 367##contig=<ID=chr16_GL383556v1_alt,length=192462> 368##contig=<ID=chr16_GL383557v1_alt,length=89672> 369##contig=<ID=chr17_GL383563v3_alt,length=375691> 370##contig=<ID=chr17_KI270862v1_alt,length=391357> 371##contig=<ID=chr17_KI270861v1_alt,length=196688> 372##contig=<ID=chr17_KI270857v1_alt,length=2877074> 373##contig=<ID=chr17_JH159146v1_alt,length=278131> 374##contig=<ID=chr17_JH159147v1_alt,length=70345> 375##contig=<ID=chr17_GL383564v2_alt,length=133151> 376##contig=<ID=chr17_GL000258v2_alt,length=1821992> 377##contig=<ID=chr17_GL383565v1_alt,length=223995> 378##contig=<ID=chr17_KI270858v1_alt,length=235827> 379##contig=<ID=chr17_KI270859v1_alt,length=108763> 380##contig=<ID=chr17_GL383566v1_alt,length=90219> 381##contig=<ID=chr17_KI270860v1_alt,length=178921> 382##contig=<ID=chr18_KI270864v1_alt,length=111737> 383##contig=<ID=chr18_GL383567v1_alt,length=289831> 384##contig=<ID=chr18_GL383570v1_alt,length=164789> 385##contig=<ID=chr18_GL383571v1_alt,length=198278> 386##contig=<ID=chr18_GL383568v1_alt,length=104552> 387##contig=<ID=chr18_GL383569v1_alt,length=167950> 388##contig=<ID=chr18_GL383572v1_alt,length=159547> 389##contig=<ID=chr18_KI270863v1_alt,length=167999> 390##contig=<ID=chr19_KI270868v1_alt,length=61734> 391##contig=<ID=chr19_KI270865v1_alt,length=52969> 392##contig=<ID=chr19_GL383573v1_alt,length=385657> 393##contig=<ID=chr19_GL383575v2_alt,length=170222> 394##contig=<ID=chr19_GL383576v1_alt,length=188024> 395##contig=<ID=chr19_GL383574v1_alt,length=155864> 396##contig=<ID=chr19_KI270866v1_alt,length=43156> 397##contig=<ID=chr19_KI270867v1_alt,length=233762> 398##contig=<ID=chr19_GL949746v1_alt,length=987716> 399##contig=<ID=chr20_GL383577v2_alt,length=128386> 400##contig=<ID=chr20_KI270869v1_alt,length=118774> 401##contig=<ID=chr20_KI270871v1_alt,length=58661> 402##contig=<ID=chr20_KI270870v1_alt,length=183433> 403##contig=<ID=chr21_GL383578v2_alt,length=63917> 404##contig=<ID=chr21_KI270874v1_alt,length=166743> 405##contig=<ID=chr21_KI270873v1_alt,length=143900> 406##contig=<ID=chr21_GL383579v2_alt,length=201197> 407##contig=<ID=chr21_GL383580v2_alt,length=74653> 408##contig=<ID=chr21_GL383581v2_alt,length=116689> 409##contig=<ID=chr21_KI270872v1_alt,length=82692> 410##contig=<ID=chr22_KI270875v1_alt,length=259914> 411##contig=<ID=chr22_KI270878v1_alt,length=186262> 412##contig=<ID=chr22_KI270879v1_alt,length=304135> 413##contig=<ID=chr22_KI270876v1_alt,length=263666> 414##contig=<ID=chr22_KI270877v1_alt,length=101331> 415##contig=<ID=chr22_GL383583v2_alt,length=96924> 416##contig=<ID=chr22_GL383582v2_alt,length=162811> 417##contig=<ID=chrX_KI270880v1_alt,length=284869> 418##contig=<ID=chrX_KI270881v1_alt,length=144206> 419##contig=<ID=chr19_KI270882v1_alt,length=248807> 420##contig=<ID=chr19_KI270883v1_alt,length=170399> 421##contig=<ID=chr19_KI270884v1_alt,length=157053> 422##contig=<ID=chr19_KI270885v1_alt,length=171027> 423##contig=<ID=chr19_KI270886v1_alt,length=204239> 424##contig=<ID=chr19_KI270887v1_alt,length=209512> 425##contig=<ID=chr19_KI270888v1_alt,length=155532> 426##contig=<ID=chr19_KI270889v1_alt,length=170698> 427##contig=<ID=chr19_KI270890v1_alt,length=184499> 428##contig=<ID=chr19_KI270891v1_alt,length=170680> 429##contig=<ID=chr1_KI270892v1_alt,length=162212> 430##contig=<ID=chr2_KI270894v1_alt,length=214158> 431##contig=<ID=chr2_KI270893v1_alt,length=161218> 432##contig=<ID=chr3_KI270895v1_alt,length=162896> 433##contig=<ID=chr4_KI270896v1_alt,length=378547> 434##contig=<ID=chr5_KI270897v1_alt,length=1144418> 435##contig=<ID=chr5_KI270898v1_alt,length=130957> 436##contig=<ID=chr6_GL000251v2_alt,length=4795265> 437##contig=<ID=chr7_KI270899v1_alt,length=190869> 438##contig=<ID=chr8_KI270901v1_alt,length=136959> 439##contig=<ID=chr8_KI270900v1_alt,length=318687> 440##contig=<ID=chr11_KI270902v1_alt,length=106711> 441##contig=<ID=chr11_KI270903v1_alt,length=214625> 442##contig=<ID=chr12_KI270904v1_alt,length=572349> 443##contig=<ID=chr15_KI270906v1_alt,length=196384> 444##contig=<ID=chr15_KI270905v1_alt,length=5161414> 445##contig=<ID=chr17_KI270907v1_alt,length=137721> 446##contig=<ID=chr17_KI270910v1_alt,length=157099> 447##contig=<ID=chr17_KI270909v1_alt,length=325800> 448##contig=<ID=chr17_JH159148v1_alt,length=88070> 449##contig=<ID=chr17_KI270908v1_alt,length=1423190> 450##contig=<ID=chr18_KI270912v1_alt,length=174061> 451##contig=<ID=chr18_KI270911v1_alt,length=157710> 452##contig=<ID=chr19_GL949747v2_alt,length=729520> 453##contig=<ID=chr22_KB663609v1_alt,length=74013> 454##contig=<ID=chrX_KI270913v1_alt,length=274009> 455##contig=<ID=chr19_KI270914v1_alt,length=205194> 456##contig=<ID=chr19_KI270915v1_alt,length=170665> 457##contig=<ID=chr19_KI270916v1_alt,length=184516> 458##contig=<ID=chr19_KI270917v1_alt,length=190932> 459##contig=<ID=chr19_KI270918v1_alt,length=123111> 460##contig=<ID=chr19_KI270919v1_alt,length=170701> 461##contig=<ID=chr19_KI270920v1_alt,length=198005> 462##contig=<ID=chr19_KI270921v1_alt,length=282224> 463##contig=<ID=chr19_KI270922v1_alt,length=187935> 464##contig=<ID=chr19_KI270923v1_alt,length=189352> 465##contig=<ID=chr3_KI270924v1_alt,length=166540> 466##contig=<ID=chr4_KI270925v1_alt,length=555799> 467##contig=<ID=chr6_GL000252v2_alt,length=4604811> 468##contig=<ID=chr8_KI270926v1_alt,length=229282> 469##contig=<ID=chr11_KI270927v1_alt,length=218612> 470##contig=<ID=chr19_GL949748v2_alt,length=1064304> 471##contig=<ID=chr22_KI270928v1_alt,length=176103> 472##contig=<ID=chr19_KI270929v1_alt,length=186203> 473##contig=<ID=chr19_KI270930v1_alt,length=200773> 474##contig=<ID=chr19_KI270931v1_alt,length=170148> 475##contig=<ID=chr19_KI270932v1_alt,length=215732> 476##contig=<ID=chr19_KI270933v1_alt,length=170537> 477##contig=<ID=chr19_GL000209v2_alt,length=177381> 478##contig=<ID=chr3_KI270934v1_alt,length=163458> 479##contig=<ID=chr6_GL000253v2_alt,length=4677643> 480##contig=<ID=chr19_GL949749v2_alt,length=1091841> 481##contig=<ID=chr3_KI270935v1_alt,length=197351> 482##contig=<ID=chr6_GL000254v2_alt,length=4827813> 483##contig=<ID=chr19_GL949750v2_alt,length=1066390> 484##contig=<ID=chr3_KI270936v1_alt,length=164170> 485##contig=<ID=chr6_GL000255v2_alt,length=4606388> 486##contig=<ID=chr19_GL949751v2_alt,length=1002683> 487##contig=<ID=chr3_KI270937v1_alt,length=165607> 488##contig=<ID=chr6_GL000256v2_alt,length=4929269> 489##contig=<ID=chr19_GL949752v1_alt,length=987100> 490##contig=<ID=chr6_KI270758v1_alt,length=76752> 491##contig=<ID=chr19_GL949753v2_alt,length=796479> 492##contig=<ID=chr19_KI270938v1_alt,length=1066800> 493##contig=<ID=chrEBV,length=171823> 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1351##contig=<ID=chrUn_JTFH01000471v1_decoy,length=1649> 1352##contig=<ID=chrUn_JTFH01000472v1_decoy,length=1649> 1353##contig=<ID=chrUn_JTFH01000473v1_decoy,length=1640> 1354##contig=<ID=chrUn_JTFH01000474v1_decoy,length=1638> 1355##contig=<ID=chrUn_JTFH01000475v1_decoy,length=1636> 1356##contig=<ID=chrUn_JTFH01000476v1_decoy,length=1632> 1357##contig=<ID=chrUn_JTFH01000477v1_decoy,length=1631> 1358##contig=<ID=chrUn_JTFH01000478v1_decoy,length=1630> 1359##contig=<ID=chrUn_JTFH01000479v1_decoy,length=1627> 1360##contig=<ID=chrUn_JTFH01000480v1_decoy,length=1624> 1361##contig=<ID=chrUn_JTFH01000481v1_decoy,length=1617> 1362##contig=<ID=chrUn_JTFH01000482v1_decoy,length=1616> 1363##contig=<ID=chrUn_JTFH01000483v1_decoy,length=1615> 1364##contig=<ID=chrUn_JTFH01000484v1_decoy,length=1611> 1365##contig=<ID=chrUn_JTFH01000485v1_decoy,length=1611> 1366##contig=<ID=chrUn_JTFH01000486v1_decoy,length=1606> 1367##contig=<ID=chrUn_JTFH01000487v1_decoy,length=1605> 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1589##contig=<ID=chrUn_JTFH01000709v1_decoy,length=1237> 1590##contig=<ID=chrUn_JTFH01000710v1_decoy,length=1236> 1591##contig=<ID=chrUn_JTFH01000711v1_decoy,length=1235> 1592##contig=<ID=chrUn_JTFH01000712v1_decoy,length=1234> 1593##contig=<ID=chrUn_JTFH01000713v1_decoy,length=1234> 1594##contig=<ID=chrUn_JTFH01000714v1_decoy,length=1234> 1595##contig=<ID=chrUn_JTFH01000715v1_decoy,length=1233> 1596##contig=<ID=chrUn_JTFH01000716v1_decoy,length=1232> 1597##contig=<ID=chrUn_JTFH01000717v1_decoy,length=1232> 1598##contig=<ID=chrUn_JTFH01000718v1_decoy,length=1231> 1599##contig=<ID=chrUn_JTFH01000719v1_decoy,length=1230> 1600##contig=<ID=chrUn_JTFH01000720v1_decoy,length=1228> 1601##contig=<ID=chrUn_JTFH01000721v1_decoy,length=1227> 1602##contig=<ID=chrUn_JTFH01000722v1_decoy,length=1227> 1603##contig=<ID=chrUn_JTFH01000723v1_decoy,length=1226> 1604##contig=<ID=chrUn_JTFH01000724v1_decoy,length=1224> 1605##contig=<ID=chrUn_JTFH01000725v1_decoy,length=1224> 1606##contig=<ID=chrUn_JTFH01000726v1_decoy,length=1220> 1607##contig=<ID=chrUn_JTFH01000727v1_decoy,length=1220> 1608##contig=<ID=chrUn_JTFH01000728v1_decoy,length=1219> 1609##contig=<ID=chrUn_JTFH01000729v1_decoy,length=1217> 1610##contig=<ID=chrUn_JTFH01000730v1_decoy,length=1216> 1611##contig=<ID=chrUn_JTFH01000731v1_decoy,length=1215> 1612##contig=<ID=chrUn_JTFH01000732v1_decoy,length=1214> 1613##contig=<ID=chrUn_JTFH01000733v1_decoy,length=1214> 1614##contig=<ID=chrUn_JTFH01000734v1_decoy,length=1214> 1615##contig=<ID=chrUn_JTFH01000735v1_decoy,length=1213> 1616##contig=<ID=chrUn_JTFH01000736v1_decoy,length=1212> 1617##contig=<ID=chrUn_JTFH01000737v1_decoy,length=1209> 1618##contig=<ID=chrUn_JTFH01000738v1_decoy,length=1208> 1619##contig=<ID=chrUn_JTFH01000739v1_decoy,length=1207> 1620##contig=<ID=chrUn_JTFH01000740v1_decoy,length=1207> 1621##contig=<ID=chrUn_JTFH01000741v1_decoy,length=1207> 1622##contig=<ID=chrUn_JTFH01000742v1_decoy,length=1206> 1623##contig=<ID=chrUn_JTFH01000743v1_decoy,length=1206> 1624##contig=<ID=chrUn_JTFH01000744v1_decoy,length=1205> 1625##contig=<ID=chrUn_JTFH01000745v1_decoy,length=1205> 1626##contig=<ID=chrUn_JTFH01000746v1_decoy,length=1204> 1627##contig=<ID=chrUn_JTFH01000747v1_decoy,length=1204> 1628##contig=<ID=chrUn_JTFH01000748v1_decoy,length=1204> 1629##contig=<ID=chrUn_JTFH01000749v1_decoy,length=1203> 1630##contig=<ID=chrUn_JTFH01000750v1_decoy,length=1201> 1631##contig=<ID=chrUn_JTFH01000751v1_decoy,length=1201> 1632##contig=<ID=chrUn_JTFH01000752v1_decoy,length=1200> 1633##contig=<ID=chrUn_JTFH01000753v1_decoy,length=1200> 1634##contig=<ID=chrUn_JTFH01000754v1_decoy,length=1199> 1635##contig=<ID=chrUn_JTFH01000755v1_decoy,length=1198> 1636##contig=<ID=chrUn_JTFH01000756v1_decoy,length=1197> 1637##contig=<ID=chrUn_JTFH01000757v1_decoy,length=1196> 1638##contig=<ID=chrUn_JTFH01000758v1_decoy,length=1195> 1639##contig=<ID=chrUn_JTFH01000759v1_decoy,length=1194> 1640##contig=<ID=chrUn_JTFH01000760v1_decoy,length=1194> 1641##contig=<ID=chrUn_JTFH01000761v1_decoy,length=1191> 1642##contig=<ID=chrUn_JTFH01000762v1_decoy,length=1189> 1643##contig=<ID=chrUn_JTFH01000763v1_decoy,length=1186> 1644##contig=<ID=chrUn_JTFH01000764v1_decoy,length=1186> 1645##contig=<ID=chrUn_JTFH01000765v1_decoy,length=1184> 1646##contig=<ID=chrUn_JTFH01000766v1_decoy,length=1183> 1647##contig=<ID=chrUn_JTFH01000767v1_decoy,length=1183> 1648##contig=<ID=chrUn_JTFH01000768v1_decoy,length=1182> 1649##contig=<ID=chrUn_JTFH01000769v1_decoy,length=1181> 1650##contig=<ID=chrUn_JTFH01000770v1_decoy,length=1181> 1651##contig=<ID=chrUn_JTFH01000771v1_decoy,length=1181> 1652##contig=<ID=chrUn_JTFH01000772v1_decoy,length=1181> 1653##contig=<ID=chrUn_JTFH01000773v1_decoy,length=1179> 1654##contig=<ID=chrUn_JTFH01000774v1_decoy,length=1178> 1655##contig=<ID=chrUn_JTFH01000775v1_decoy,length=1178> 1656##contig=<ID=chrUn_JTFH01000776v1_decoy,length=1177> 1657##contig=<ID=chrUn_JTFH01000777v1_decoy,length=1177> 1658##contig=<ID=chrUn_JTFH01000778v1_decoy,length=1171> 1659##contig=<ID=chrUn_JTFH01000779v1_decoy,length=1171> 1660##contig=<ID=chrUn_JTFH01000780v1_decoy,length=1171> 1661##contig=<ID=chrUn_JTFH01000781v1_decoy,length=1170> 1662##contig=<ID=chrUn_JTFH01000782v1_decoy,length=1170> 1663##contig=<ID=chrUn_JTFH01000783v1_decoy,length=1167> 1664##contig=<ID=chrUn_JTFH01000784v1_decoy,length=1167> 1665##contig=<ID=chrUn_JTFH01000785v1_decoy,length=1167> 1666##contig=<ID=chrUn_JTFH01000786v1_decoy,length=1165> 1667##contig=<ID=chrUn_JTFH01000787v1_decoy,length=1165> 1668##contig=<ID=chrUn_JTFH01000788v1_decoy,length=1162> 1669##contig=<ID=chrUn_JTFH01000789v1_decoy,length=1157> 1670##contig=<ID=chrUn_JTFH01000790v1_decoy,length=1156> 1671##contig=<ID=chrUn_JTFH01000791v1_decoy,length=1156> 1672##contig=<ID=chrUn_JTFH01000792v1_decoy,length=1154> 1673##contig=<ID=chrUn_JTFH01000793v1_decoy,length=1154> 1674##contig=<ID=chrUn_JTFH01000794v1_decoy,length=1151> 1675##contig=<ID=chrUn_JTFH01000795v1_decoy,length=1151> 1676##contig=<ID=chrUn_JTFH01000796v1_decoy,length=1150> 1677##contig=<ID=chrUn_JTFH01000797v1_decoy,length=1150> 1678##contig=<ID=chrUn_JTFH01000798v1_decoy,length=1147> 1679##contig=<ID=chrUn_JTFH01000799v1_decoy,length=1147> 1680##contig=<ID=chrUn_JTFH01000800v1_decoy,length=1146> 1681##contig=<ID=chrUn_JTFH01000801v1_decoy,length=1144> 1682##contig=<ID=chrUn_JTFH01000802v1_decoy,length=1144> 1683##contig=<ID=chrUn_JTFH01000803v1_decoy,length=1143> 1684##contig=<ID=chrUn_JTFH01000804v1_decoy,length=1142> 1685##contig=<ID=chrUn_JTFH01000805v1_decoy,length=1141> 1686##contig=<ID=chrUn_JTFH01000806v1_decoy,length=1141> 1687##contig=<ID=chrUn_JTFH01000807v1_decoy,length=1140> 1688##contig=<ID=chrUn_JTFH01000808v1_decoy,length=1138> 1689##contig=<ID=chrUn_JTFH01000809v1_decoy,length=1134> 1690##contig=<ID=chrUn_JTFH01000810v1_decoy,length=1134> 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QUAL FILTER INFO FORMAT NWD242235 NWD359156 3406chr20 60963 . G C 37 . AC=1;AF=0.500;AN=2;DP=38;ExcessHet=4.7712;FS=0.000;MQ=55.46;MQRankSum=0.514;MQ_DP=38;QD=2.68;ReadPosRankSum=-8.780e-01;SOR=0.941;VarDP=25 GT:AD:DP:GQ:PL:SB ./. 0/1:18,7:25:67:67,0,344:9,9,4,3 3407chr20 61083 . C T 393 . AC=2;AF=0.500;AN=4;DP=62;ExcessHet=4.7712;FS=1.105;MQ=59.60;MQRankSum=0.178;MQ_DP=62;QD=7.55;ReadPosRankSum=1.34;SOR=0.838;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:12,9:21:99:249,0,270:7,5,3,6 0/1:26,9:35:99:174,0,738:13,13,5,4 3408chr20 61446 . T C 141 . AC=2;AF=0.500;AN=4;DP=140;ExcessHet=4.7712;FS=8.206;MQ=45.33;MQRankSum=1.32;MQ_DP=140;QD=2.80;ReadPosRankSum=-1.627e+00;SOR=2.076;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:29,4:33:70:.:.:70,0,854:16,13,1,3 0/1:23,5:28:99:0|1:61446_T_C:101,0,667:11,12,1,4 3409chr20 61540 . A G 1012 . AC=1;AF=0.500;AN=2;DP=71;ExcessHet=4.7712;FS=0.000;MQ=57.51;MQRankSum=1.28;MQ_DP=71;QD=17.97;ReadPosRankSum=0.140;SOR=0.737;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:31,27:58:99:0|1:61540_A_G:1042,0,1736:13,18,11,16 3410chr20 61558 . T A 1171 . AC=1;AF=0.500;AN=2;DP=70;ExcessHet=4.7712;FS=2.248;MQ=58.05;MQRankSum=-2.800e-01;MQ_DP=70;QD=20.36;ReadPosRankSum=0.159;SOR=0.423;VarDP=59 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:30,29:59:99:0|1:61540_A_G:1201,0,1746:10,20,12,17 3411chr20 61561 . G T 1181 . AC=1;AF=0.500;AN=2;DP=70;ExcessHet=4.7712;FS=2.248;MQ=57.96;MQRankSum=0.983;MQ_DP=70;QD=20.18;ReadPosRankSum=0.377;SOR=0.374;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:30,30:60:99:0|1:61540_A_G:1211,0,1746:10,20,13,17 3412chr20 61566 . T C 1220 . AC=1;AF=0.500;AN=2;DP=71;ExcessHet=4.7712;FS=0.996;MQ=57.59;MQRankSum=-3.600e-02;MQ_DP=71;QD=20.49;ReadPosRankSum=0.859;SOR=0.495;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:29,32:61:99:0|1:61540_A_G:1250,0,1785:11,18,14,18 3413chr20 61568 . T C 1226 . AC=1;AF=0.500;AN=2;DP=71;ExcessHet=4.7712;FS=0.996;MQ=57.59;MQRankSum=-1.336e+00;MQ_DP=71;QD=20.59;ReadPosRankSum=1.25;SOR=0.495;VarDP=61 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:29,32:61:99:0|1:61540_A_G:1256,0,1667:11,18,14,18 3414chr20 61580 . A C 1484 . AC=1;AF=0.500;AN=2;DP=74;ExcessHet=4.7712;FS=2.097;MQ=56.60;MQRankSum=-1.937e+00;MQ_DP=74;QD=23.29;ReadPosRankSum=0.379;SOR=0.632;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:27,38:65:99:0|1:61540_A_G:1514,0,1461:12,15,20,18 3415chr20 61581 . C T 1484 . AC=1;AF=0.500;AN=2;DP=73;ExcessHet=4.7712;FS=0.972;MQ=56.56;MQRankSum=0.034;MQ_DP=73;QD=23.66;ReadPosRankSum=-1.059e+00;SOR=0.679;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:26,38:64:99:0|1:61540_A_G:1514,0,1461:12,14,20,18 3416chr20 61622 . C T 1472 . AC=1;AF=0.500;AN=2;DP=77;ExcessHet=4.7712;FS=2.038;MQ=55.09;MQRankSum=-2.575e+00;MQ_DP=77;QD=22.09;ReadPosRankSum=0.945;SOR=1.040;VarDP=68 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:30,38:68:99:0|1:61622_C_T:1502,0,9467:15,15,22,16 3417chr20 61624 . C T 1475 . AC=1;AF=0.500;AN=2;DP=75;ExcessHet=4.7712;FS=3.400;MQ=54.95;MQRankSum=-2.171e+00;MQ_DP=75;QD=22.80;ReadPosRankSum=0.581;SOR=1.080;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:29,37:66:99:0|1:61622_C_T:1505,0,9402:14,15,22,15 3418chr20 61625 . A T 1472 . AC=1;AF=0.500;AN=2;DP=74;ExcessHet=4.7712;FS=4.873;MQ=54.88;MQRankSum=-2.815e+00;MQ_DP=74;QD=23.11;ReadPosRankSum=0.643;SOR=1.041;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:28,37:65:99:0|1:61622_C_T:1502,0,9720:13,15,22,15 3419chr20 61635 . G A 1433 . AC=1;AF=0.500;AN=2;DP=74;ExcessHet=4.7712;FS=3.468;MQ=54.93;MQRankSum=-4.283e+00;MQ_DP=74;QD=22.86;ReadPosRankSum=0.913;SOR=0.977;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:28,36:64:99:0|1:61622_C_T:1463,0,10405:13,15,21,15 3420chr20 61645 . G A 1425 . AC=1;AF=0.500;AN=2;DP=76;ExcessHet=4.7712;FS=3.380;MQ=54.47;MQRankSum=-3.199e+00;MQ_DP=76;QD=22.38;ReadPosRankSum=0.073;SOR=0.892;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:28,37:65:99:0|1:61622_C_T:1455,0,10310:13,15,21,16 3421chr20 61655 . A C 1461 . AC=1;AF=0.500;AN=2;DP=77;ExcessHet=4.7712;FS=3.470;MQ=53.77;MQRankSum=-3.233e+00;MQ_DP=77;QD=23.30;ReadPosRankSum=-1.087e+00;SOR=1.179;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:26,38:64:99:0|1:61622_C_T:1491,0,11206:13,13,23,15 3422chr20 61674 . T C 1304 . AC=1;AF=0.500;AN=2;DP=79;ExcessHet=4.7712;FS=3.454;MQ=52.69;MQRankSum=-3.278e+00;MQ_DP=79;QD=20.84;ReadPosRankSum=0.255;SOR=1.143;VarDP=64 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:31,33:64:99:0|1:61622_C_T:1334,0,12462:15,16,20,13 3423chr20 61680 . ACTCC A 1210.97 . AC=1;AF=0.250;AN=4;DP=152;ExcessHet=3.0103;FS=2.146;MQ=52.21;MQRankSum=-2.782e+00;MQ_DP=78;QD=20.16;ReadPosRankSum=-1.200e-01;SOR=1.112;VarDP=62 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/0:.:74:34:74:.:.:0,34,2005 0/1:30,32:62:99:.:0|1:61622_C_T:1250,0,12472:15,15,19,13 3424chr20 61685 . AT A 1129.97 . AC=1;AF=0.500;AN=2;DP=74;ExcessHet=4.7712;FS=1.010;MQ=51.95;MQRankSum=-2.653e+00;MQ_DP=74;QD=20.16;ReadPosRankSum=0.156;SOR=0.976;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:28,30:58:99:0|1:61622_C_T:1169,0,12189:14,14,17,13 3425chr20 61696 . CTTTTT C 1177.97 . AC=1;AF=0.500;AN=2;DP=72;ExcessHet=4.7712;FS=0.000;MQ=52.47;MQRankSum=-1.979e+00;MQ_DP=72;QD=21.35;ReadPosRankSum=-7.840e-01;SOR=0.614;VarDP=57 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:26,31:57:99:0|1:61622_C_T:1217,0,11307:14,12,16,15 3426chr20 61706 . TTCCAC T 1138.97 . AC=1;AF=0.500;AN=2;DP=71;ExcessHet=4.7712;FS=1.037;MQ=52.99;MQRankSum=-1.981e+00;MQ_DP=71;QD=21.42;ReadPosRankSum=0.310;SOR=0.495;VarDP=55 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:26,29:55:99:0|1:61622_C_T:1178,0,10771:15,11,15,14 3427chr20 61736 . T C 1100 . AC=1;AF=0.500;AN=2;DP=67;ExcessHet=4.7712;FS=3.978;MQ=54.73;MQRankSum=-1.235e+00;MQ_DP=67;QD=21.73;ReadPosRankSum=1.04;SOR=1.445;VarDP=52 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:26,26:52:99:0|1:61622_C_T:1130,0,10836:13,13,9,17 3428chr20 61750 . A G 1163 . AC=1;AF=0.500;AN=2;DP=67;ExcessHet=4.7712;FS=4.322;MQ=55.60;MQRankSum=-2.930e-01;MQ_DP=67;QD=24.35;ReadPosRankSum=-1.404e+00;SOR=1.440;VarDP=49 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:21,28:49:99:0|1:61622_C_T:1193,0,7608:9,12,8,20 3429chr20 61791 . C A 2198 . AC=2;AF=0.500;AN=4;DP=134;ExcessHet=4.7712;FS=3.761;MQ=57.13;MQRankSum=1.19;MQ_DP=134;QD=22.51;ReadPosRankSum=0.557;SOR=0.412;VarDP=99 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:21,24:45:99:0|1:61791_C_A:957,0,775:7,14,15,9 0/1:23,31:54:99:0|1:61622_C_T:1271,0,7312:10,13,11,20 3430chr20 61800 . G A 2417 . AC=2;AF=0.500;AN=4;DP=133;ExcessHet=4.7712;FS=1.625;MQ=57.46;MQRankSum=-7.270e-01;MQ_DP=133;QD=24.72;ReadPosRankSum=0.011;SOR=0.540;VarDP=99 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:20,25:45:99:0|1:61791_C_A:1041,0,790:9,11,15,10 0/1:21,33:54:99:0|1:61622_C_T:1406,0,6459:9,12,13,20 3431chr20 61810 . A T 2579 . AC=2;AF=0.500;AN=4;DP=138;ExcessHet=4.7712;FS=0.000;MQ=57.70;MQRankSum=-1.990e-01;MQ_DP=138;QD=25.33;ReadPosRankSum=0.216;SOR=0.697;VarDP=103 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:21,27:48:99:0|1:61791_C_A:1161,0,876:10,11,16,11 0/1:21,34:55:99:0|1:61622_C_T:1448,0,6196:10,11,13,21 3432chr20 61819 . G C 2383 . AC=2;AF=0.500;AN=4;DP=140;ExcessHet=4.7712;FS=0.717;MQ=58.57;MQRankSum=1.33;MQ_DP=140;QD=22.55;ReadPosRankSum=1.29;SOR=0.781;VarDP=107 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:23,26:49:99:0|1:61791_C_A:1064,0,884:12,11,14,12 0/1:25,33:58:99:0|1:61622_C_T:1349,0,6714:11,14,13,20 3433chr20 61834 . T C 2142 . AC=2;AF=0.500;AN=4;DP=133;ExcessHet=4.7712;FS=1.625;MQ=58.67;MQRankSum=-4.430e-01;MQ_DP=133;QD=21.72;ReadPosRankSum=1.08;SOR=0.698;VarDP=100 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:23,22:45:99:0|1:61791_C_A:852,0,942:13,10,12,10 0/1:22,33:55:99:0|1:61622_C_T:1320,0,5036:11,11,14,19 3434chr20 61842 . T C 2170 . AC=2;AF=0.500;AN=4;DP=137;ExcessHet=4.7712;FS=1.573;MQ=58.58;MQRankSum=0.193;MQ_DP=137;QD=21.57;ReadPosRankSum=1.28;SOR=0.618;VarDP=102 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:23,22:45:99:0|1:61791_C_A:886,0,897:13,10,13,9 0/1:24,33:57:99:0|1:61622_C_T:1314,0,5235:12,12,14,19 3435chr20 61857 . G T 1981 . AC=2;AF=0.500;AN=4;DP=133;ExcessHet=4.7712;FS=1.587;MQ=58.73;MQRankSum=-3.530e-01;MQ_DP=133;QD=20.11;ReadPosRankSum=2.14;SOR=0.547;VarDP=100 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:23,21:44:99:0|1:61791_C_A:791,0,826:13,10,12,9 0/1:26,30:56:99:0|1:61622_C_T:1220,0,5405:14,12,14,16 3436chr20 61899 . A G 339 . AC=1;AF=0.500;AN=2;DP=56;ExcessHet=4.7712;FS=4.657;MQ=56.69;MQRankSum=0.408;MQ_DP=56;QD=9.46;ReadPosRankSum=-9.160e-01;SOR=0.250;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:21,18:39:99:369,0,575:14,7,9,9 ./. 3437chr20 61940 . A C 837 . AC=1;AF=0.500;AN=2;DP=61;ExcessHet=4.7712;FS=1.121;MQ=56.68;MQRankSum=0.340;MQ_DP=61;QD=18.06;ReadPosRankSum=0.485;SOR=0.430;VarDP=48 GT:AD:DP:GQ:PL:SB 0/1:24,24:48:99:867,0,561:14,10,12,12 ./. 3438chr20 61945 . C T 190 . AC=1;AF=0.500;AN=2;DP=62;ExcessHet=4.7712;FS=0.000;MQ=56.67;MQRankSum=-3.550e-01;MQ_DP=62;QD=4.89;ReadPosRankSum=0.610;SOR=0.773;VarDP=45 GT:AD:DP:GQ:PL:SB 0/1:36,9:45:99:220,0,1569:19,17,5,4 ./. 3439chr20 61946 . T TCCATG 576.97 . AC=1;AF=0.250;AN=4;DP=91;ExcessHet=3.0103;FS=0.000;MQ=56.62;MQRankSum=-1.090e+00;MQ_DP=61;QD=14.00;ReadPosRankSum=0.498;SOR=0.715;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:25,10:44:99:.:616,0,1110:13,12,10,9 0/0:.:30:87:30:0,87,1502 3440chr20 61953 . C G 938 . AC=1;AF=0.250;AN=4;DP=94;ExcessHet=3.0103;FS=2.448;MQ=56.73;MQRankSum=-1.382e+00;MQ_DP=63;QD=19.36;ReadPosRankSum=0.273;SOR=1.127;VarDP=50 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/1:27,23:50:99:.:0|1:61953_C_G:968,0,1048:15,12,15,8 0/0:.:31:87:31:.:.:0,87,1502 3441chr20 61956 . G T 854 . AC=1;AF=0.250;AN=4;DP=91;ExcessHet=3.0103;FS=2.471;MQ=56.42;MQRankSum=-1.073e+00;MQ_DP=61;QD=18.42;ReadPosRankSum=-3.300e-01;SOR=1.106;VarDP=48 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/1:25,23:48:99:.:0|1:61953_C_G:884,0,1054:14,11,15,8 0/0:.:30:87:30:.:.:0,87,1502 3442chr20 62495 . C T 1311 . AC=2;AF=0.500;AN=4;DP=124;ExcessHet=4.7712;FS=1.745;MQ=53.72;MQRankSum=-1.958e+00;MQ_DP=124;QD=14.58;ReadPosRankSum=2.12;SOR=0.602;VarDP=92 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:27,18:45:99:0|1:62495_C_T:717,0,1511:8,19,11,7 0/1:30,17:47:99:0|1:62495_C_T:624,0,1209:18,12,7,10 3443chr20 62496 . T G 1311 . AC=2;AF=0.500;AN=4;DP=123;ExcessHet=4.7712;FS=1.728;MQ=53.67;MQRankSum=-7.420e-01;MQ_DP=123;QD=14.74;ReadPosRankSum=2.07;SOR=0.627;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:26,18:44:99:0|1:62495_C_T:717,0,1511:8,18,11,7 0/1:30,17:47:99:0|1:62495_C_T:624,0,1209:18,12,7,10 3444chr20 62497 . C T 1311 . AC=2;AF=0.500;AN=4;DP=123;ExcessHet=4.7712;FS=2.824;MQ=53.47;MQRankSum=-1.229e+00;MQ_DP=123;QD=14.74;ReadPosRankSum=2.02;SOR=0.762;VarDP=91 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:26,18:44:99:0|1:62495_C_T:717,0,1511:8,18,12,6 0/1:30,17:47:99:0|1:62495_C_T:624,0,1209:18,12,7,10 3445chr20 62505 . C G 1302 . AC=2;AF=0.500;AN=4;DP=126;ExcessHet=4.7712;FS=1.706;MQ=54.07;MQRankSum=0.683;MQ_DP=126;QD=14.02;ReadPosRankSum=2.92;SOR=0.721;VarDP=95 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:27,19:46:99:0|1:62495_C_T:714,0,1500:9,18,12,7 0/1:32,17:49:99:0|1:62495_C_T:618,0,1293:19,13,7,10 3446chr20 62517 . A C 1490 . AC=2;AF=0.500;AN=4;DP=116;ExcessHet=4.7712;FS=2.771;MQ=54.96;MQRankSum=-1.508e+00;MQ_DP=116;QD=16.52;ReadPosRankSum=2.15;SOR=0.792;VarDP=92 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:22,21:43:99:0|1:62495_C_T:816,0,1024:6,16,13,8 0/1:30,19:49:99:0|1:62495_C_T:704,0,1244:18,12,9,10 3447chr20 62522 . T C 1491 . AC=2;AF=0.500;AN=4;DP=113;ExcessHet=4.7712;FS=3.919;MQ=55.46;MQRankSum=-4.670e-01;MQ_DP=113;QD=16.35;ReadPosRankSum=2.36;SOR=0.770;VarDP=93 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:22,22:44:99:0|1:62495_C_T:858,0,1021:6,16,13,9 0/1:31,18:49:99:0|1:62495_C_T:663,0,1248:18,13,9,9 3448chr20 62540 . T C 1133 . AC=2;AF=0.500;AN=4;DP=90;ExcessHet=4.7712;FS=0.868;MQ=58.33;MQRankSum=-6.030e-01;MQ_DP=90;QD=14.54;ReadPosRankSum=-6.600e-01;SOR=0.652;VarDP=80 GT:AD:DP:GQ:PL:SB 0/1:19,20:39:99:791,0,1106:6,13,11,9 0/1:30,11:41:99:372,0,1230:17,13,5,6 3449chr20 62642 . TACTCCATTCC T 678.97 . AC=2;AF=0.500;AN=4;DP=95;ExcessHet=4.7712;FS=0.000;MQ=48.06;MQRankSum=1.06;MQ_DP=95;QD=18.41;ReadPosRankSum=2.16;SOR=0.793;VarDP=39 GT:AD:DP:GQ:PL:SB 0/1:11,10:21:99:377,0,407:6,5,5,5 0/1:9,9:18:99:341,0,339:4,5,5,4 3450chr20 62883 . T A 69 . AC=1;AF=0.500;AN=2;DP=34;ExcessHet=4.7712;FS=2.231;MQ=53.55;MQRankSum=-3.162e+00;MQ_DP=34;QD=3.81;ReadPosRankSum=0.107;SOR=1.609;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:22,4:26:99:0|1:62818_T_G:99,0,988:11,11,1,3 ./. 3451chr20 62892 . C A 69 . AC=1;AF=0.500;AN=2;DP=34;ExcessHet=4.7712;FS=2.231;MQ=53.55;MQRankSum=-3.162e+00;MQ_DP=34;QD=3.81;ReadPosRankSum=0.533;SOR=1.609;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:22,4:26:99:0|1:62818_T_G:99,0,997:11,11,1,3 ./. 3452chr20 62898 . T A 30 . AC=1;AF=0.500;AN=2;DP=33;ExcessHet=4.7712;FS=0.000;MQ=54.02;MQRankSum=-2.801e+00;MQ_DP=33;QD=2.40;ReadPosRankSum=1.46;SOR=1.179;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:22,3:25:60:0|1:62818_T_G:60,0,958:11,11,1,2 ./. 3453chr20 62903 . A G 33 . AC=1;AF=0.500;AN=2;DP=32;ExcessHet=4.7712;FS=0.000;MQ=52.89;MQRankSum=-2.793e+00;MQ_DP=32;QD=2.63;ReadPosRankSum=1.40;SOR=1.128;VarDP=24 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:21,3:24:63:0|1:62818_T_G:63,0,916:11,10,1,2 ./. 3454chr20 62940 . TCC T 73.97 . AC=1;AF=0.250;AN=4;DP=117;ExcessHet=3.0103;FS=2.269;MQ=51.90;MQRankSum=-1.520e+00;MQ_DP=36;QD=4.52;ReadPosRankSum=0.711;SOR=1.577;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/1:21,4:25:99:.:0|1:62940_TCC_T:113,0,757:11,10,1,3 0/0:.:81:45:81:.:.:0,45,2308 3455chr20 62943 . ACTCCAATCCGCTCCACTCCATTCCATTC A 70.97 . AC=1;AF=0.250;AN=4;DP=124;ExcessHet=3.0103;FS=2.269;MQ=50.33;MQRankSum=-2.187e+00;MQ_DP=42;QD=4.40;ReadPosRankSum=0.829;SOR=1.577;VarDP=25 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/1:21,4:25:99:.:0|1:62940_TCC_T:110,0,799:11,10,1,3 0/0:.:83:67:82:.:.:0,67,1800 3456chr20 62994 . A C 251 . AC=1;AF=0.500;AN=2;DP=40;ExcessHet=4.7712;FS=3.862;MQ=50.29;MQRankSum=-3.583e+00;MQ_DP=40;QD=11.24;ReadPosRankSum=-6.340e-01;SOR=1.022;VarDP=25 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:17,8:25:99:0|1:62940_TCC_T:281,0,630:7,10,5,3 ./. 3457chr20 63000 . T G 257 . AC=1;AF=0.500;AN=2;DP=38;ExcessHet=4.7712;FS=1.760;MQ=50.57;MQRankSum=-3.215e+00;MQ_DP=38;QD=11.96;ReadPosRankSum=-1.588e+00;SOR=1.061;VarDP=24 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:16,8:24:99:0|1:62940_TCC_T:287,0,536:7,9,5,3 ./. 3458chr20 63022 . A C 215 . AC=1;AF=0.500;AN=2;DP=40;ExcessHet=4.7712;FS=0.000;MQ=50.97;MQRankSum=-3.122e+00;MQ_DP=40;QD=9.42;ReadPosRankSum=1.17;SOR=0.871;VarDP=26 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:19,7:26:99:0|1:62940_TCC_T:245,0,643:9,10,4,3 ./. 3459chr20 64506 . C CTCCAT 794.97 . AC=2;AF=0.500;AN=4;DP=125;ExcessHet=4.7712;FS=3.665;MQ=46.84;MQRankSum=0.628;MQ_DP=125;QD=13.90;ReadPosRankSum=1.33;SOR=1.270;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:19,14:33:99:1|0:64484_A_C:486,0,870:10,9,9,5 0/1:17,10:27:99:0|1:64506_C_CTCCAT:348,0,852:8,9,6,4 3460chr20 66141 . AATTCC A 236.97 . AC=1;AF=0.500;AN=2;DP=23;ExcessHet=4.7712;FS=0.000;MQ=56.62;MQRankSum=-4.400e-02;MQ_DP=23;QD=15.33;ReadPosRankSum=-2.088e+00;SOR=0.859;VarDP=18 GT:AD:DP:GQ:PL:SB 0/1:10,8:18:99:276,0,615:7,3,6,2 ./. 3461chr20 68303 . T C 845 . AC=2;AF=0.500;AN=4;DP=71;ExcessHet=4.7712;FS=1.954;MQ=60.00;MQRankSum=1.17;MQ_DP=71;QD=12.32;ReadPosRankSum=1.72;SOR=0.583;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:21,20:41:99:515,0,606:8,13,8,12 0/1:17,13:30:99:360,0,499:13,4,8,5 3462chr20 72765 . T TA 493.97 . AC=2;AF=0.500;AN=4;DP=58;ExcessHet=4.7712;FS=1.093;MQ=60.00;MQRankSum=0.934;MQ_DP=58;QD=10.88;ReadPosRankSum=-5.890e-01;SOR=0.941;VarDP=49 GT:AD:DP:GQ:PL:SB 0/1:13,10:23:99:209,0,290:10,3,5,5 0/1:11,15:26:99:324,0,228:2,9,9,6 3463chr20 81154 . T G 726 . AC=2;AF=0.500;AN=4;DP=60;ExcessHet=4.7712;FS=1.111;MQ=60.00;MQRankSum=0.995;MQ_DP=60;QD=12.81;ReadPosRankSum=2.21;SOR=0.446;VarDP=59 GT:AD:DP:GQ:PL:SB 0/1:17,15:32:99:375,0,505:13,4,11,4 0/1:14,13:27:99:381,0,405:10,4,8,5 3464chr20 82090 . C A 901 . AC=2;AF=0.500;AN=4;DP=69;ExcessHet=4.7712;FS=0.939;MQ=60.00;MQRankSum=-4.800e-01;MQ_DP=69;QD=13.90;ReadPosRankSum=1.47;SOR=0.542;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:19,16:35:99:1|0:82084_C_A:461,0,565:12,7,10,6 0/1:15,17:32:99:.:.:470,0,426:9,6,9,8 3465chr20 83158 . C T 841 . AC=2;AF=0.500;AN=4;DP=72;ExcessHet=4.7712;FS=1.975;MQ=60.00;MQRankSum=1.29;MQ_DP=72;QD=12.10;ReadPosRankSum=0.783;SOR=0.563;VarDP=72 GT:AD:DP:GQ:PL:SB 0/1:18,12:30:99:337,0,534:11,7,8,4 0/1:23,19:42:99:534,0,657:12,11,7,12 3466chr20 84647 . G T 1043 . AC=2;AF=0.500;AN=4;DP=73;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=-1.580e-01;MQ_DP=73;QD=14.70;ReadPosRankSum=2.05;SOR=0.749;VarDP=73 GT:AD:DP:GQ:PL:SB 0/1:18,19:37:99:550,0,490:9,9,10,9 0/1:19,17:36:99:523,0,507:9,10,7,10 3467chr20 85259 . G A 2135 . AC=4;AF=1.00;AN=4;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=1.32;MQ_DP=63;QD=34.37;ReadPosRankSum=-1.317e+00;SOR=0.311;VarDP=63 GT:AD:DP:GQ:PL:SB 1/1:1,24:25:65:815,65,0:1,0,17,7 1/1:0,38:38:99:1350,114,0:0,0,17,21 3468chr20 85729 . G A 1802 . AC=4;AF=1.00;AN=4;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=54;QD=34.57;SOR=0.730;VarDP=53 GT:AD:DP:GQ:PL:SB 1/1:0,23:23:69:769,69,0:0,0,13,10 1/1:0,30:30:90:1063,90,0:0,0,13,17 3469chr20 86859 . T TTGGTATCTAG 3425.97 . AC=3;AF=0.750;AN=4;DP=79;ExcessHet=3.0103;FS=3.565;MQ=60.00;MQRankSum=0.204;MQ_DP=79;QD=46.20;ReadPosRankSum=0.815;SOR=0.667;VarDP=75 GT:AD:DP:GQ:PL:SB 0/1:1,33:34:11:1508,0,11:1,0,14,19 1/1:0,41:41:99:1957,132,0:0,0,18,23 3470chr20 88108 . T C 337 . AC=1;AF=0.250;AN=4;DP=57;ExcessHet=3.0103;FS=5.023;MQ=60.00;MQRankSum=-2.170e-01;MQ_DP=36;QD=10.49;ReadPosRankSum=-1.817e+00;SOR=0.924;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:20,15:35:99:.:367,0,621:12,8,6,9 0/0:.:32:26:21:0,26,626 3471chr20 88453 . G A 990 . AC=2;AF=0.500;AN=4;DP=83;ExcessHet=4.7712;FS=0.833;MQ=60.00;MQRankSum=-5.660e-01;MQ_DP=83;QD=12.44;ReadPosRankSum=0.755;SOR=0.822;VarDP=82 GT:AD:DP:GQ:PL:SB 0/1:17,15:32:99:465,0,495:8,9,8,7 0/1:30,20:50:99:555,0,862:16,14,11,9 3472chr20 88767 . C T 478 . AC=1;AF=0.250;AN=4;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=-3.430e-01;MQ_DP=26;QD=19.54;ReadPosRankSum=0.870;SOR=0.941;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:10,16:26:99:.:508,0,249:5,5,7,9 0/0:.:36:30:31:0,30,630 3473chr20 88840 . CT C 157.97 . AC=1;AF=0.250;AN=4;DP=58;ExcessHet=3.0103;FS=1.775;MQ=60.00;MQRankSum=0.306;MQ_DP=27;QD=7.58;ReadPosRankSum=0.917;SOR=0.255;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:18,8:26:99:.:197,0,527:12,6,4,4 0/0:.:36:30:31:0,30,630 3474chr20 88865 . G GACAC,GACACAC 1692.97 . AC=1,2;AF=0.250,0.500;AN=4;DP=64;ExcessHet=3.0103;FS=2.988;MQ=60.00;MQRankSum=0.259;MQ_DP=64;QD=34.64;ReadPosRankSum=0.727;SOR=1.003;VarDP=50 GT:AD:DP:GQ:PL:SB 1/2:0,6,18:24:99:1052,537,464,191,0,117:0,0,13,11 0/2:11,0,15:26:99:680,714,1465,0,751,700:5,6,10,5 3475chr20 91463 . TA T 963.97 . AC=2;AF=0.500;AN=4;DP=60;ExcessHet=0.7918;FS=0.000;MQ=60.00;MQRankSum=-5.660e-01;MQ_DP=35;QD=30.39;ReadPosRankSum=0.868;SOR=0.756;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1/1:2,31:33:37:.:1003,37,0:1,1,15,16 0/0:.:35:45:25:0,45,784 3476chr20 92969 . CT C 376.97 . AC=3;AF=0.750;AN=4;DP=45;ExcessHet=3.0103;FS=26.874;MQ=58.94;MQRankSum=-4.530e-01;MQ_DP=45;QD=13.42;ReadPosRankSum=0.537;SOR=1.531;VarDP=31 GT:AD:DP:GQ:PL:SB 1/1:0,13:13:39:307,39,0:0,0,5,8 0/1:11,7:18:99:109,0,150:10,1,1,6 3477chr20 93706 . G A 399 . AC=1;AF=0.250;AN=4;DP=57;ExcessHet=3.0103;FS=1.237;MQ=60.00;MQRankSum=0.642;MQ_DP=39;QD=11.00;ReadPosRankSum=-2.140e-01;SOR=0.926;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:29:34:18:0,34,615 0/1:23,16:39:99:.:429,0,667:13,10,10,6 3478chr20 93902 . A AT 245.97 . AC=1;AF=0.250;AN=4;DP=48;ExcessHet=3.0103;FS=1.583;MQ=60.00;MQRankSum=-1.140e+00;MQ_DP=29;QD=10.56;ReadPosRankSum=1.09;SOR=1.230;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:14,13:27:99:.:285,0,313:8,6,9,4 0/0:.:32:21:19:0,21,591 3479chr20 94088 . G GT 951.97 . AC=2;AF=0.500;AN=4;DP=58;ExcessHet=0.7918;FS=0.000;MQ=60.00;MQ_DP=39;QD=30.03;SOR=0.752;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1/1:0,33:33:99:.:991,105,0:0,0,16,17 0/0:.:32:21:19:0,21,591 3480chr20 94613 . C A 357 . AC=1;AF=0.250;AN=4;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.471;MQ_DP=21;QD=18.43;ReadPosRankSum=0.109;SOR=0.458;VarDP=21 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:8,13:21:99:.:387,0,215:3,5,6,7 0/0:.:32:21:19:0,21,591 3481chr20 96321 . T C 1257 . AC=3;AF=0.750;AN=4;DP=62;ExcessHet=3.0103;FS=3.817;MQ=60.00;MQRankSum=0.499;MQ_DP=62;QD=21.10;ReadPosRankSum=1.88;SOR=1.069;VarDP=61 GT:AD:DP:GQ:PL:SB 1/1:0,29:29:87:961,87,0:0,0,17,12 0/1:19,13:32:99:326,0,604:9,10,8,5 3482chr20 97175 . G A 488 . AC=1;AF=0.250;AN=4;DP=62;ExcessHet=3.0103;FS=4.430;MQ=60.00;MQRankSum=0.995;MQ_DP=44;QD=11.77;ReadPosRankSum=-4.500e-01;SOR=0.442;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:24:22:18:0,22,450 0/1:25,19:44:99:.:518,0,707:9,16,10,9 3483chr20 97324 . G GT 78.97 . AC=1;AF=0.250;AN=4;DP=41;ExcessHet=3.0103;FS=0.000;MQ=59.20;MQRankSum=0.683;MQ_DP=21;QD=7.38;ReadPosRankSum=-9.980e-01;SOR=0.693;VarDP=16 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:8,8:16:99:.:118,0,140:4,4,4,4 0/0:.:33:37:20:0,37,614 3484chr20 98471 . GT G 447.97 . AC=1;AF=0.250;AN=4;DP=51;ExcessHet=3.0103;FS=4.301;MQ=60.00;MQRankSum=-1.704e+00;MQ_DP=31;QD=17.39;ReadPosRankSum=0.839;SOR=1.814;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:8,20:28:99:.:487,0,145:3,5,4,16 0/0:.:33:37:20:0,37,614 3485chr20 98593 . T C 857 . AC=2;AF=0.500;AN=4;DP=48;ExcessHet=0.7918;FS=0.000;MQ=60.00;MQ_DP=28;QD=35.48;SOR=2.215;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 1/1:0,25:25:75:.:887,75,0:0,0,6,19 0/0:.:33:37:20:0,37,614 3486chr20 99430 . G A 1068 . AC=2;AF=0.500;AN=4;DP=53;ExcessHet=0.7918;FS=0.000;MQ=60.00;MQRankSum=0.788;MQ_DP=33;QD=33.27;ReadPosRankSum=0.683;SOR=0.337;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 1/1:1,32:33:65:.:1098,65,0:1,0,18,14 0/0:.:33:37:20:0,37,614 3487chr20 100014 . A G 2433 . AC=4;AF=1.00;AN=4;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=74;QD=34.21;SOR=0.807;VarDP=72 GT:AD:DP:GQ:PL:SB 1/1:0,33:33:99:1102,99,0:0,0,15,18 1/1:0,39:39:99:1361,117,0:0,0,19,20 3488chr20 100087 . C G 506 . AC=1;AF=0.250;AN=4;DP=62;ExcessHet=3.0103;FS=2.884;MQ=60.00;MQRankSum=1.49;MQ_DP=38;QD=14.11;ReadPosRankSum=0.671;SOR=1.243;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:35:37:24:0,37,755 0/1:19,19:38:99:.:536,0,531:10,9,7,12 3489chr20 101341 . A G 469 . AC=1;AF=0.250;AN=4;DP=65;ExcessHet=3.0103;FS=2.843;MQ=60.00;MQRankSum=1.19;MQ_DP=41;QD=12.48;ReadPosRankSum=-7.850e-01;SOR=0.296;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:35:37:24:0,37,755 0/1:21,19:40:99:.:499,0,600:14,7,10,9 3490chr20 101371 . T C 970 . AC=2;AF=0.500;AN=4;DP=78;ExcessHet=4.7712;FS=9.611;MQ=59.62;MQRankSum=-7.590e-01;MQ_DP=78;QD=12.82;ReadPosRankSum=0.993;SOR=1.496;VarDP=78 GT:AD:DP:GQ:PL:SB 0/1:20,20:40:99:485,0,606:10,10,13,7 0/1:19,19:38:99:515,0,566:8,11,13,6 3491chr20 101433 . A C 688 . AC=1;AF=0.250;AN=4;DP=73;ExcessHet=3.0103;FS=0.000;MQ=59.57;MQRankSum=-7.900e-02;MQ_DP=36;QD=19.94;ReadPosRankSum=-5.850e-01;SOR=0.693;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/1:18,18:36:99:.:0|1:101433_A_C:718,0,696:9,9,9,9 0/0:.:41:71:37:.:.:0,71,1237 3492chr20 101438 . G A 622 . AC=1;AF=0.250;AN=4;DP=74;ExcessHet=3.0103;FS=0.000;MQ=59.26;MQRankSum=-2.280e-01;MQ_DP=37;QD=17.62;ReadPosRankSum=0.015;SOR=0.602;VarDP=37 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/1:19,18:37:99:.:0|1:101433_A_C:652,0,733:9,10,9,9 0/0:.:41:71:37:.:.:0,71,1237 3493chr20 101498 . A G 551 . AC=1;AF=0.250;AN=4;DP=76;ExcessHet=3.0103;FS=1.238;MQ=59.34;MQRankSum=0.100;MQ_DP=39;QD=14.90;ReadPosRankSum=-1.413e+00;SOR=0.481;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/1:23,16:39:99:.:0|1:101498_A_G:581,0,907:10,13,8,8 0/0:.:41:71:37:.:.:0,71,1237 3494chr20 101505 . A C 520 . AC=1;AF=0.250;AN=4;DP=73;ExcessHet=3.0103;FS=3.050;MQ=59.29;MQRankSum=0.860;MQ_DP=36;QD=15.28;ReadPosRankSum=-1.022e+00;SOR=0.772;VarDP=36 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/1:22,14:36:99:.:0|1:101498_A_G:550,0,910:9,13,8,6 0/0:.:41:71:37:.:.:0,71,1237 3495chr20 101574 . G A 570 . AC=1;AF=0.250;AN=4;DP=79;ExcessHet=3.0103;FS=1.227;MQ=59.39;MQRankSum=-1.952e+00;MQ_DP=42;QD=14.29;ReadPosRankSum=0.995;SOR=1.075;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:20,22:42:99:.:600,0,495:9,11,8,14 0/0:.:41:71:37:0,71,1237 3496chr20 101576 . G A 2966 . AC=4;AF=1.00;AN=4;DP=83;ExcessHet=3.0103;FS=0.000;MQ=59.69;MQ_DP=83;QD=36.99;SOR=1.124;VarDP=81 GT:AD:DP:GQ:PL:SB 1/1:0,42:42:99:1665,126,0:0,0,17,25 1/1:0,39:39:99:1331,117,0:0,0,16,23 3497chr20 102060 . T C 258 . AC=1;AF=0.250;AN=4;DP=49;ExcessHet=3.0103;FS=1.623;MQ=60.00;MQRankSum=-9.750e-01;MQ_DP=26;QD=11.08;ReadPosRankSum=0.501;SOR=0.956;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:16,10:26:99:.:288,0,458:7,9,6,4 0/0:.:33:29:23:0,29,714 3498chr20 102591 . TTC T 91.97 . AC=1;AF=0.250;AN=4;DP=51;ExcessHet=3.0103;FS=0.000;MQ=59.09;MQRankSum=-8.540e-01;MQ_DP=27;QD=7.71;ReadPosRankSum=-8.540e-01;SOR=1.112;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:11,6:17:99:.:131,0,643:6,5,4,2 0/0:.:39:42:24:0,42,675 3499chr20 102609 . CTGTGTGTGTG C,CTG,CTCTGTGTGTGTGTGTG 1458.97 . AC=1,1,1;AF=0.250,0.250,0.250;AN=4;DP=73;ExcessHet=3.0103;FS=2.705;MQ=59.37;MQRankSum=2.08;MQ_DP=73;QD=28.81;ReadPosRankSum=2.31;SOR=0.741;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:14,10,0,0:24:99:355,0,565,331,533,832,331,533,832,832:8,6,6,4 2/3:0,0,18,10:28:99:1143,995,967,454,302,668,698,693,0,663:0,0,11,17 3500chr20 102619 . G *,C 632 . AC=1,1;AF=0.250,0.250;AN=4;DP=73;ExcessHet=4.7712;FS=2.191;MQ=59.60;MQRankSum=-1.376e+00;MQ_DP=42;QD=18.39;ReadPosRankSum=0.459;SOR=0.399;VarDP=36 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:14,10,0:24:99:.:.:355,0,565,331,533,832:8,6,6,4 0/2:18,0,18:36:99:0|1:102619_G_C:662,717,1441,0,724,669:5,13,8,10 3501chr20 102621 . G C 235 . AC=1;AF=0.250;AN=4;DP=70;ExcessHet=3.0103;FS=0.000;MQ=59.05;MQRankSum=0.804;MQ_DP=31;QD=10.60;ReadPosRankSum=3.13;SOR=0.936;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:15,10:25:99:.:265,0,565:8,7,6,4 0/0:.:39:72:39:0,72,1080 3502chr20 102634 . T C 657 . AC=1;AF=0.250;AN=4;DP=69;ExcessHet=3.0103;FS=2.814;MQ=59.57;MQRankSum=-4.360e-01;MQ_DP=39;QD=17.62;ReadPosRankSum=1.39;SOR=0.333;VarDP=39 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/0:.:31:51:30:.:.:0,51,765 0/1:20,19:39:99:.:0|1:102619_G_C:687,0,728:7,13,9,10 3503chr20 105364 . CA C 346.97 . AC=2;AF=0.500;AN=4;DP=64;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.297;MQ_DP=64;QD=7.72;ReadPosRankSum=1.47;SOR=0.693;VarDP=50 GT:AD:DP:GQ:PL:SB 0/1:12,10:22:99:173,0,200:7,5,5,5 0/1:16,12:28:99:213,0,259:12,4,10,2 3504chr20 105523 . AG A 654.97 . AC=1;AF=0.250;AN=4;DP=55;ExcessHet=3.0103;FS=1.479;MQ=60.00;MQRankSum=-2.340e-01;MQ_DP=34;QD=20.41;ReadPosRankSum=-2.000e+00;SOR=1.179;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:12,22:34:99:.:694,0,347:5,7,7,15 0/0:.:33:23:21:0,23,675 3505chr20 106471 . G A 570 . AC=1;AF=0.250;AN=4;DP=51;ExcessHet=3.0103;FS=3.696;MQ=60.00;MQRankSum=-5.880e-01;MQ_DP=30;QD=20.00;ReadPosRankSum=1.18;SOR=0.701;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:9,21:30:99:.:600,0,203:6,3,9,12 0/0:.:33:23:21:0,23,675 3506chr20 106622 . GA G 342.97 . AC=1;AF=0.250;AN=4;DP=56;ExcessHet=3.0103;FS=5.792;MQ=60.00;MQRankSum=-8.300e-01;MQ_DP=35;QD=12.73;ReadPosRankSum=0.982;SOR=0.364;VarDP=30 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/1:15,15:30:99:.:0|1:106622_GA_G:382,0,341:4,11,8,7 0/0:.:33:23:21:.:.:0,23,675 3507chr20 106775 . A C 990 . AC=2;AF=0.500;AN=4;DP=52;ExcessHet=0.7918;FS=0.000;MQ=60.00;MQ_DP=31;QD=34.00;SOR=1.765;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 1/1:0,30:30:90:.:1020,90,0:0,0,21,9 0/0:.:33:23:21:0,23,675 3508chr20 108186 . C A 315 . AC=1;AF=0.250;AN=4;DP=44;ExcessHet=3.0103;FS=4.310;MQ=60.00;MQRankSum=-4.000e-01;MQ_DP=23;QD=15.00;ReadPosRankSum=-1.540e-01;SOR=1.833;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:11,12:23:99:.:345,0,322:7,4,10,2 0/0:.:33:23:21:0,23,675 3509chr20 109367 . C A 288 . AC=1;AF=0.250;AN=4;DP=43;ExcessHet=3.0103;FS=9.356;MQ=60.00;MQRankSum=0.520;MQ_DP=25;QD=12.72;ReadPosRankSum=0.082;SOR=1.018;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:30:37:18:0,37,620 0/1:14,11:25:99:.:318,0,385:10,4,4,7 3510chr20 110343 . A G 649 . AC=1;AF=0.250;AN=4;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=-4.920e-01;MQ_DP=41;QD=16.98;ReadPosRankSum=1.53;SOR=0.668;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:17,23:40:99:.:679,0,491:8,9,11,12 0/0:.:34:46:24:0,46,745 3511chr20 110447 . C T 1527 . AC=3;AF=0.750;AN=4;DP=74;ExcessHet=3.0103;FS=3.296;MQ=60.00;MQRankSum=-3.960e-01;MQ_DP=74;QD=21.33;ReadPosRankSum=-5.100e-01;SOR=1.132;VarDP=73 GT:AD:DP:GQ:PL:SB 1/1:0,38:38:99:1340,114,0:0,0,15,23 0/1:26,9:35:99:217,0,748:13,13,4,5 3512chr20 110705 . G A 312 . AC=1;AF=0.250;AN=4;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.733;MQ_DP=20;QD=17.10;ReadPosRankSum=-2.700e-01;SOR=0.892;VarDP=20 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:8,12:20:99:.:342,0,217:3,5,4,8 0/0:.:38:32:32:0,32,1038 3513chr20 110867 . G A 1480 . AC=3;AF=0.750;AN=4;DP=69;ExcessHet=3.0103;FS=3.658;MQ=60.00;MQRankSum=-1.440e-01;MQ_DP=69;QD=22.21;ReadPosRankSum=0.980;SOR=0.503;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:1,26:27:56:868,56,0:0,1,12,14 0/1:19,22:41:99:642,0,537:8,11,13,9 3514chr20 111725 . A G 493 . AC=1;AF=0.250;AN=4;DP=69;ExcessHet=3.0103;FS=1.360;MQ=60.00;MQRankSum=-4.640e-01;MQ_DP=41;QD=13.41;ReadPosRankSum=0.042;SOR=1.112;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:20,19:39:99:.:523,0,547:13,7,14,5 0/0:.:35:59:28:0,59,914 3515chr20 111886 . A G 1403 . AC=3;AF=0.750;AN=4;DP=68;ExcessHet=3.0103;FS=2.355;MQ=60.00;MQRankSum=-1.733e+00;MQ_DP=68;QD=21.07;ReadPosRankSum=1.30;SOR=1.207;VarDP=68 GT:AD:DP:GQ:PL:SB 1/1:1,32:33:74:987,74,0:1,0,21,11 0/1:18,17:35:99:446,0,511:9,9,10,7 3516chr20 112799 . A G 319 . AC=1;AF=0.250;AN=4;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=-3.590e-01;MQ_DP=27;QD=13.42;ReadPosRankSum=1.33;SOR=0.728;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:13,13:26:99:.:349,0,373:6,7,7,6 0/0:.:28:26:17:0,26,522 3517chr20 113005 . C CTTTT 252.97 . AC=1;AF=0.250;AN=4;DP=58;ExcessHet=3.0103;FS=37.916;MQ=58.09;MQRankSum=0.369;MQ_DP=31;QD=17.18;ReadPosRankSum=-2.055e+00;SOR=5.130;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:5,12:17:99:.:292,0,179:0,5,12,0 0/0:.:27:11:27:0,11,708 3518chr20 113290 . G A 503 . AC=1;AF=0.250;AN=4;DP=54;ExcessHet=3.0103;FS=2.780;MQ=60.00;MQRankSum=2.18;MQ_DP=39;QD=13.67;ReadPosRankSum=0.660;SOR=0.524;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:20,19:39:99:.:533,0,523:12,8,9,10 0/0:.:35:36:15:0,36,491 3519chr20 120058 . C T 354 . AC=1;AF=0.250;AN=4;DP=50;ExcessHet=3.0103;FS=3.211;MQ=60.00;MQRankSum=-4.720e-01;MQ_DP=34;QD=11.29;ReadPosRankSum=1.73;SOR=1.473;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:20,14:34:99:.:384,0,583:9,11,4,10 0/0:.:34:40:16:0,40,501 3520chr20 120721 . G A 516 . AC=1;AF=0.250;AN=4;DP=62;ExcessHet=3.0103;FS=2.884;MQ=59.68;MQRankSum=-9.930e-01;MQ_DP=39;QD=14.37;ReadPosRankSum=-3.500e-01;SOR=1.243;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:30:43:23:0,43,699 0/1:19,19:38:99:.:546,0,536:10,9,7,12 3521chr20 121439 . TATTCTTCAGCTGTCAAA T 501.97 . AC=1;AF=0.250;AN=4;DP=60;ExcessHet=3.0103;FS=11.982;MQ=60.00;MQRankSum=-1.185e+00;MQ_DP=37;QD=18.03;ReadPosRankSum=0.894;SOR=1.074;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:16,14:30:99:.:541,0,628:4,12,9,5 0/0:.:35:26:23:0,26,724 3522chr20 121540 . T C 475 . AC=1;AF=0.250;AN=4;DP=51;ExcessHet=3.0103;FS=3.616;MQ=60.00;MQRankSum=-1.223e+00;MQ_DP=28;QD=18.04;ReadPosRankSum=-1.260e-01;SOR=0.218;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:11,17:28:99:.:505,0,308:3,8,8,9 0/0:.:35:26:23:0,26,724 3523chr20 122158 . G A 507 . AC=1;AF=0.250;AN=4;DP=59;ExcessHet=3.0103;FS=5.023;MQ=60.00;MQRankSum=0.332;MQ_DP=36;QD=14.92;ReadPosRankSum=1.09;SOR=1.415;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:18,18:36:99:.:537,0,506:8,10,12,6 0/0:.:35:26:23:0,26,724 3524chr20 122876 . A T 280 . AC=1;AF=0.250;AN=4;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=-2.900e-01;MQ_DP=24;QD=12.92;ReadPosRankSum=0.348;SOR=0.760;VarDP=24 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:13,11:24:99:.:310,0,380:8,5,7,4 0/0:.:35:26:23:0,26,724 3525chr20 124258 . C T 65 . AC=1;AF=0.250;AN=4;DP=47;ExcessHet=3.0103;FS=5.656;MQ=60.00;MQRankSum=-7.830e-01;MQ_DP=24;QD=4.13;ReadPosRankSum=-1.120e-01;SOR=2.833;VarDP=23 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:18,5:23:95:.:95,0,546:7,11,0,5 0/0:.:35:26:23:0,26,724 3526chr20 124383 . AT A 241.97 . AC=1;AF=0.250;AN=4;DP=61;ExcessHet=3.0103;FS=3.220;MQ=60.00;MQRankSum=0.717;MQ_DP=38;QD=8.78;ReadPosRankSum=-3.400e-01;SOR=0.474;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:27:40:23:0,40,704 0/1:17,15:32:99:.:281,0,312:11,6,7,8 3527chr20 125994 . G A 327 . AC=1;AF=0.250;AN=4;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.233;MQ_DP=30;QD=11.90;ReadPosRankSum=-6.560e-01;SOR=0.892;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:18,12:30:99:.:357,0,515:7,11,4,8 0/0:.:38:21:28:0,21,315 3528chr20 126062 . C CT,CTTT 1628.97 . AC=3,1;AF=0.750,0.250;AN=4;DP=75;ExcessHet=3.0103;FS=0.000;MQ=58.99;MQ_DP=75;QD=28.27;SOR=1.217;VarDP=59 GT:AD:DP:GQ:PL:SB 1/2:0,12,9:21:99:743,291,214,307,0,345:0,0,11,10 1/1:0,38,0:38:99:925,114,0,925,114,926:0,0,25,13 3529chr20 127645 . T G 406 . AC=1;AF=0.250;AN=4;DP=54;ExcessHet=3.0103;FS=1.376;MQ=59.47;MQRankSum=-5.240e-01;MQ_DP=34;QD=13.21;ReadPosRankSum=-8.500e-01;SOR=0.399;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:15,18:33:99:.:436,0,403:9,6,9,9 0/0:.:32:23:20:0,23,620 3530chr20 127687 . A C 1637 . AC=3;AF=0.750;AN=4;DP=65;ExcessHet=3.0103;FS=1.318;MQ=59.72;MQRankSum=-1.124e+00;MQ_DP=65;QD=26.05;ReadPosRankSum=-2.520e-01;SOR=0.463;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,35:35:99:1130,105,0:0,0,20,15 0/1:10,19:29:99:537,0,260:6,4,8,11 3531chr20 128317 . A C 325 . AC=1;AF=0.250;AN=4;DP=50;ExcessHet=3.0103;FS=3.473;MQ=60.00;MQRankSum=1.67;MQ_DP=27;QD=13.15;ReadPosRankSum=-8.010e-01;SOR=0.741;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:13,14:27:99:.:355,0,381:8,5,6,8 0/0:.:30:33:23:0,33,751 3532chr20 128517 . CA C,CAA,CAAA 309.97 . AC=1,1,1;AF=0.250,0.250,0.250;AN=4;DP=40;ExcessHet=3.0103;FS=0.000;MQ=59.55;MQRankSum=2.26;MQ_DP=40;QD=15.17;ReadPosRankSum=-1.377e+00;SOR=0.368;VarDP=23 GT:AD:DP:GQ:PL:SB 1/2:0,3,9,0:12:50:177,151,235,54,0,50,177,151,54,177:0,0,8,4 0/3:3,0,0,8:11:73:172,181,278,181,278,278,0,97,97,73:3,0,7,1 3533chr20 129417 . G C 503 . AC=1;AF=0.250;AN=4;DP=60;ExcessHet=3.0103;FS=1.258;MQ=60.00;MQRankSum=0.729;MQ_DP=37;QD=14.81;ReadPosRankSum=1.62;SOR=0.495;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:17,19:36:99:.:533,0,456:7,10,9,10 0/0:.:35:21:23:0,21,770 3534chr20 129457 . A G 495 . AC=1;AF=0.250;AN=4;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=-9.340e-01;MQ_DP=38;QD=13.82;ReadPosRankSum=1.28;SOR=0.904;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:19,19:38:99:.:525,0,556:9,10,8,11 0/0:.:35:21:23:0,21,770 3535chr20 130061 . C T 310 . AC=1;AF=0.250;AN=4;DP=53;ExcessHet=3.0103;FS=1.485;MQ=59.37;MQRankSum=-5.540e-01;MQ_DP=30;QD=11.72;ReadPosRankSum=1.04;SOR=0.951;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:17,12:29:99:.:340,0,439:8,9,7,5 0/0:.:35:21:23:0,21,770 3536chr20 130329 . G A 518 . AC=1;AF=0.250;AN=4;DP=49;ExcessHet=3.0103;FS=3.949;MQ=44.46;MQRankSum=-1.083e+00;MQ_DP=26;QD=22.83;ReadPosRankSum=0.088;SOR=1.765;VarDP=24 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/1:10,14:24:99:.:0|1:130329_G_A:548,0,391:5,5,4,10 0/0:.:35:21:23:.:.:0,21,770 3537chr20 130338 . A C,G 1480 . AC=2,1;AF=0.500,0.250;AN=4;DP=57;ExcessHet=3.0103;FS=0.000;MQ=43.39;MQRankSum=1.45;MQ_DP=57;QD=29.61;ReadPosRankSum=0.427;SOR=0.636;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:SB 1/2:1,14,9:24:99:.:.:837,275,378,554,0,558:1,0,9,14 0/1:10,17,0:27:99:0|1:130338_A_C:673,0,591,703,642,1345:4,6,10,7 3538chr20 130339 . T C 1201 . AC=2;AF=0.500;AN=4;DP=57;ExcessHet=4.7712;FS=0.000;MQ=43.39;MQRankSum=0.381;MQ_DP=57;QD=24.14;ReadPosRankSum=1.20;SOR=0.579;VarDP=51 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:10,14:24:99:0|1:130329_G_A:558,0,412:5,5,5,9 0/1:10,17:27:99:0|1:130338_A_C:673,0,591:4,6,10,7 3539chr20 131163 . G A 150 . AC=1;AF=0.250;AN=4;DP=28;ExcessHet=3.0103;FS=0.000;MQ=33.49;MQRankSum=0.830;MQ_DP=17;QD=10.59;ReadPosRankSum=0.927;SOR=0.859;VarDP=17 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:10,7:17:99:.:180,0,248:2,8,1,6 0/0:.:14:33:11:0,33,362 3540chr20 131230 . A G 170 . AC=1;AF=0.250;AN=4;DP=33;ExcessHet=3.0103;FS=0.000;MQ=35.16;MQRankSum=-1.943e+00;MQ_DP=16;QD=12.50;ReadPosRankSum=1.94;SOR=0.693;VarDP=16 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:8,8:16:99:.:200,0,228:2,6,2,6 0/0:.:19:32:17:0,32,571 3541chr20 131374 . G A 64 . AC=1;AF=0.250;AN=4;DP=20;ExcessHet=3.0103;FS=3.010;MQ=29.97;MQRankSum=0.365;MQ_DP=10;QD=9.40;ReadPosRankSum=0.00;SOR=0.105;VarDP=10 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:6,4:10:94:.:94,0,133:5,1,2,2 0/0:.:19:24:10:0,24,318 3542chr20 132236 . C T 287 . AC=1;AF=0.250;AN=4;DP=40;ExcessHet=3.0103;FS=0.000;MQ=48.32;MQRankSum=0.137;MQ_DP=25;QD=12.68;ReadPosRankSum=-6.300e-01;SOR=0.936;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:24:22:15:0,22,407 0/1:14,11:25:99:.:317,0,421:8,6,7,4 3543chr20 133837 . A T 51 . AC=1;AF=0.250;AN=4;DP=5;ExcessHet=3.0103;FS=0.000;MQ=28.47;MQRankSum=0.727;MQ_DP=4;QD=20.25;ReadPosRankSum=0.727;SOR=0.916;VarDP=4 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:1:3:1:0,3,25 0/1:1,3:4:14:.:81,0,14:1,0,1,2 3544chr20 135293 . C G 99 . AC=1;AF=0.250;AN=4;DP=22;ExcessHet=3.0103;FS=0.000;MQ=37.15;MQRankSum=-1.840e-01;MQ_DP=15;QD=8.60;ReadPosRankSum=-7.960e-01;SOR=0.892;VarDP=15 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:10,5:15:99:.:129,0,291:9,1,5,0 0/0:.:14:21:7:0,21,243 3545chr20 135387 . G A 169 . AC=1;AF=0.250;AN=4;DP=21;ExcessHet=3.0103;FS=2.480;MQ=38.21;MQRankSum=-9.780e-01;MQ_DP=13;QD=15.31;ReadPosRankSum=-6.960e-01;SOR=0.148;VarDP=13 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:8:18:8:0,18,270 0/1:5,8:13:99:.:199,0,127:4,1,4,4 3546chr20 135595 . A G 72 . AC=1;AF=0.250;AN=4;DP=34;ExcessHet=3.0103;FS=14.880;MQ=40.49;MQRankSum=-1.435e+00;MQ_DP=19;QD=5.37;ReadPosRankSum=0.787;SOR=3.593;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:14,5:19:99:.:102,0,372:5,9,5,0 0/0:.:26:24:15:0,24,477 3547chr20 135764 . G A 461 . AC=1;AF=0.250;AN=4;DP=42;ExcessHet=3.0103;FS=6.903;MQ=46.09;MQRankSum=-1.582e+00;MQ_DP=27;QD=18.19;ReadPosRankSum=0.126;SOR=0.111;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:10,17:27:99:.:491,0,276:9,1,11,6 0/0:.:26:24:15:0,24,477 3548chr20 135904 . G A 77 . AC=1;AF=0.250;AN=4;DP=37;ExcessHet=3.0103;FS=0.000;MQ=54.12;MQRankSum=-6.940e-01;MQ_DP=20;QD=5.63;ReadPosRankSum=-1.390e-01;SOR=0.730;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:14,5:19:99:.:107,0,384:8,6,3,2 0/0:.:28:24:17:0,24,547 3549chr20 136146 . A G 317 . AC=1;AF=0.250;AN=4;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=-4.920e-01;MQ_DP=34;QD=10.52;ReadPosRankSum=1.29;SOR=0.719;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:19,14:33:99:.:347,0,581:12,7,9,5 0/0:.:33:26:23:0,26,675 3550chr20 136668 . G GCAGGATTTCAT 877.97 . AC=1;AF=0.250;AN=4;DP=67;ExcessHet=3.0103;FS=5.105;MQ=60.00;MQRankSum=-1.020e+00;MQ_DP=44;QD=24.13;ReadPosRankSum=-4.880e-01;SOR=0.188;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:16,22:38:99:.:917,0,1872:4,12,10,12 0/0:.:33:26:23:0,26,675 3551chr20 139004 . G GT 209.97 . AC=1;AF=0.250;AN=4;DP=54;ExcessHet=3.0103;FS=7.829;MQ=60.00;MQRankSum=0.868;MQ_DP=31;QD=11.32;ReadPosRankSum=0.067;SOR=2.804;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:13,9:22:99:.:249,0,389:7,6,8,1 0/0:.:33:26:23:0,26,675 3552chr20 139481 . A AAG 2237.97 . AC=3;AF=0.750;AN=4;DP=71;ExcessHet=3.0103;FS=1.062;MQ=60.00;MQRankSum=-1.586e+00;MQ_DP=71;QD=32.53;ReadPosRankSum=1.40;SOR=0.720;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,38:38:99:1698,114,0:0,0,20,18 0/1:17,15:32:99:579,0,684:8,9,8,7 3553chr20 139830 . A G 387 . AC=1;AF=0.250;AN=4;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.645;MQ_DP=29;QD=14.89;ReadPosRankSum=1.11;SOR=0.709;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:13,15:28:99:.:417,0,388:6,7,8,7 0/0:.:34:54:29:0,54,810 3554chr20 140109 . C CAATT 2337.97 . AC=3;AF=0.750;AN=4;DP=77;ExcessHet=3.0103;FS=3.771;MQ=60.00;MQRankSum=-1.707e+00;MQ_DP=77;QD=32.12;ReadPosRankSum=-1.038e+00;SOR=0.880;VarDP=74 GT:AD:DP:GQ:PL:SB 1/1:0,30:30:90:1350,90,0:0,0,13,17 0/1:18,26:44:99:1027,0,882:10,8,11,15 3555chr20 140669 . A C 370 . AC=1;AF=0.250;AN=4;DP=51;ExcessHet=3.0103;FS=1.580;MQ=60.00;MQRankSum=-1.615e+00;MQ_DP=25;QD=16.00;ReadPosRankSum=-9.030e-01;SOR=0.870;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:11,14:25:99:.:400,0,317:6,5,6,8 0/0:.:35:40:26:0,40,834 3556chr20 140837 . C A 202 . AC=1;AF=0.500;AN=2;DP=28;ExcessHet=4.7712;FS=3.687;MQ=59.05;MQRankSum=-1.028e+00;MQ_DP=28;QD=8.92;ReadPosRankSum=-1.028e+00;SOR=1.609;VarDP=26 GT:AD:DP:GQ:PL:SB 0/1:16,10:26:99:232,0,409:8,8,3,7 ./. 3557chr20 141183 . C T 345 . AC=1;AF=0.250;AN=4;DP=61;ExcessHet=3.0103;FS=2.867;MQ=60.00;MQRankSum=-2.360e-01;MQ_DP=42;QD=8.93;ReadPosRankSum=0.787;SOR=1.368;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:27,15:42:99:.:375,0,747:14,13,10,5 0/0:.:32:37:19:0,37,640 3558chr20 141335 . G A 628 . AC=1;AF=0.250;AN=4;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.425;MQ_DP=34;QD=19.35;ReadPosRankSum=0.886;SOR=0.730;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:13,21:34:99:.:658,0,313:5,8,8,13 0/0:.:32:37:19:0,37,640 3559chr20 141634 . GA G 319.97 . AC=1;AF=0.250;AN=4;DP=57;ExcessHet=3.0103;FS=1.311;MQ=60.00;MQRankSum=0.314;MQ_DP=38;QD=10.26;ReadPosRankSum=0.875;SOR=0.644;VarDP=35 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:18,17:35:99:.:359,0,395:10,8,8,9 0/0:.:32:37:19:0,37,640 3560chr20 141867 . G A 521 . AC=1;AF=0.250;AN=4;DP=64;ExcessHet=3.0103;FS=4.365;MQ=59.64;MQRankSum=0.620;MQ_DP=45;QD=12.81;ReadPosRankSum=-8.140e-01;SOR=0.789;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:22,21:43:99:.:551,0,583:9,13,12,9 0/0:.:32:37:19:0,37,640 3561chr20 142165 . T TTA 508.97 . AC=1;AF=0.250;AN=4;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=-3.780e-01;MQ_DP=37;QD=17.13;ReadPosRankSum=1.70;SOR=0.914;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:15,17:32:99:.:548,0,479:7,8,7,10 0/0:.:32:37:19:0,37,640 3562chr20 142330 . G A 429 . AC=1;AF=0.250;AN=4;DP=48;ExcessHet=3.0103;FS=5.620;MQ=60.00;MQRankSum=-2.609e+00;MQ_DP=29;QD=15.83;ReadPosRankSum=-1.100e-01;SOR=1.561;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:13,16:29:99:.:459,0,365:7,6,5,11 0/0:.:32:37:19:0,37,640 3563chr20 143010 . G GT 256.97 . AC=1;AF=0.250;AN=4;DP=54;ExcessHet=3.0103;FS=3.093;MQ=60.00;MQRankSum=-1.270e-01;MQ_DP=36;QD=8.97;ReadPosRankSum=-8.920e-01;SOR=0.796;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:28:25:18:0,25,600 0/1:19,14:33:99:.:296,0,470:8,11,8,6 3564chr20 143661 . A C 334 . AC=1;AF=0.250;AN=4;DP=53;ExcessHet=3.0103;FS=3.628;MQ=60.00;MQRankSum=-7.690e-01;MQ_DP=26;QD=14.00;ReadPosRankSum=1.59;SOR=0.991;VarDP=26 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:13,13:26:99:.:364,0,364:5,8,8,5 0/0:.:37:34:27:0,34,904 3565chr20 143771 . C T 477 . AC=1;AF=0.250;AN=4;DP=63;ExcessHet=3.0103;FS=17.353;MQ=60.00;MQRankSum=0.617;MQ_DP=36;QD=14.08;ReadPosRankSum=0.269;SOR=1.728;VarDP=36 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:18,18:36:99:.:507,0,537:5,13,13,5 0/0:.:37:34:27:0,34,904 3566chr20 143906 . C T 369 . AC=1;AF=0.250;AN=4;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.240;MQ_DP=30;QD=13.76;ReadPosRankSum=-1.287e+00;SOR=0.836;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:15,14:29:99:.:399,0,414:7,8,6,8 0/0:.:37:34:27:0,34,904 3567chr20 144480 . C T 365 . AC=1;AF=0.250;AN=4;DP=56;ExcessHet=3.0103;FS=1.483;MQ=60.00;MQRankSum=-2.410e-01;MQ_DP=29;QD=13.62;ReadPosRankSum=0.373;SOR=1.179;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:16,13:29:99:.:395,0,424:8,8,8,5 0/0:.:37:34:27:0,34,904 3568chr20 144897 . G C 238 . AC=1;AF=0.250;AN=4;DP=55;ExcessHet=3.0103;FS=1.520;MQ=60.00;MQRankSum=0.847;MQ_DP=28;QD=9.57;ReadPosRankSum=1.08;SOR=1.123;VarDP=28 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:17,11:28:99:.:268,0,471:9,8,7,4 0/0:.:37:34:27:0,34,904 3569chr20 145514 . GCAAA G 164.97 . AC=1;AF=0.250;AN=4;DP=49;ExcessHet=3.0103;FS=5.484;MQ=60.00;MQRankSum=0.111;MQ_DP=22;QD=9.27;ReadPosRankSum=-7.740e-01;SOR=0.078;VarDP=22 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:16,6:22:99:.:204,0,915:13,3,3,3 0/0:.:37:34:27:0,34,904 3570chr20 145669 . ACC A 1375.97 . AC=2;AF=0.500;AN=4;DP=60;ExcessHet=0.7918;FS=0.000;MQ=60.00;MQ_DP=33;QD=44.22;SOR=1.284;VarDP=32 GT:AD:DP:GQ:MIN_DP:PL:SB 1/1:0,32:32:96:.:1415,96,0:0,0,12,20 0/0:.:37:34:27:0,34,904 3571chr20 145888 . G A 836 . AC=2;AF=0.500;AN=4;DP=55;ExcessHet=4.7712;FS=15.671;MQ=59.93;MQRankSum=1.21;MQ_DP=55;QD=15.75;ReadPosRankSum=2.04;SOR=0.574;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:11,13:24:99:378,0,300:5,6,9,4 0/1:14,17:31:99:488,0,369:1,13,8,9 3572chr20 145959 . C A 985 . AC=2;AF=0.500;AN=4;DP=55;ExcessHet=4.7712;FS=1.075;MQ=60.00;MQRankSum=1.51;MQ_DP=55;QD=18.80;ReadPosRankSum=-7.740e-01;SOR=0.811;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:6,16:22:99:510,0,142:3,3,10,6 0/1:15,17:32:99:505,0,425:7,8,8,9 3573chr20 145973 . T C 962 . AC=2;AF=0.500;AN=4;DP=56;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=1.24;MQ_DP=56;QD=18.04;ReadPosRankSum=1.85;SOR=0.589;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:7,18:25:99:561,0,168:4,3,10,8 0/1:15,15:30:99:431,0,431:8,7,7,8 3574chr20 146089 . C T 998 . AC=2;AF=0.500;AN=4;DP=62;ExcessHet=4.7712;FS=14.029;MQ=60.00;MQRankSum=-6.550e-01;MQ_DP=62;QD=16.58;ReadPosRankSum=1.88;SOR=1.091;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:10,21:31:99:635,0,244:5,5,9,12 0/1:17,14:31:99:393,0,467:13,4,4,10 3575chr20 146119 . C T 728 . AC=2;AF=0.500;AN=4;DP=55;ExcessHet=4.7712;FS=12.659;MQ=60.00;MQRankSum=1.25;MQ_DP=55;QD=14.04;ReadPosRankSum=1.25;SOR=1.693;VarDP=54 GT:AD:DP:GQ:PL:SB 0/1:12,16:28:99:473,0,288:6,6,6,10 0/1:15,11:26:99:285,0,408:10,5,2,9 3576chr20 146282 . C A 1135 . AC=2;AF=0.500;AN=4;DP=67;ExcessHet=4.7712;FS=1.998;MQ=60.00;MQRankSum=-2.400e-02;MQ_DP=67;QD=17.65;ReadPosRankSum=0.946;SOR=0.849;VarDP=66 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:14,13:27:99:0|1:146282_C_A:483,0,757:7,7,6,7 0/1:21,18:39:99:0|1:146282_C_A:682,0,1343:10,11,11,7 3577chr20 146289 . A T 1167 . AC=2;AF=0.500;AN=4;DP=66;ExcessHet=4.7712;FS=0.942;MQ=60.00;MQRankSum=0.564;MQ_DP=66;QD=18.42;ReadPosRankSum=-9.900e-02;SOR=0.780;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:SB 0/1:13,13:26:99:0|1:146282_C_A:518,0,732:6,7,6,7 0/1:22,17:39:99:0|1:146282_C_A:679,0,1375:11,11,10,7 3578chr20 147079 . A C 931 . AC=2;AF=0.500;AN=4;DP=61;ExcessHet=4.7712;FS=7.080;MQ=60.00;MQRankSum=1.84;MQ_DP=61;QD=16.02;ReadPosRankSum=0.826;SOR=0.548;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:13,17:30:99:456,0,372:5,8,10,7 0/1:12,18:30:99:505,0,327:4,8,9,9 3579chr20 147311 . C T 446 . AC=1;AF=0.250;AN=4;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=-1.567e+00;MQ_DP=33;QD=14.42;ReadPosRankSum=-3.060e-01;SOR=0.593;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:31:40:21:0,40,681 0/1:17,16:33:99:.:476,0,491:9,8,8,8 3580chr20 148072 . C G 973 . AC=2;AF=0.500;AN=4;DP=79;ExcessHet=4.7712;FS=7.745;MQ=60.00;MQRankSum=1.20;MQ_DP=79;QD=12.70;ReadPosRankSum=0.521;SOR=1.576;VarDP=79 GT:AD:DP:GQ:PL:SB 0/1:12,16:28:99:422,0,313:6,6,5,11 0/1:28,23:51:99:581,0,820:13,15,7,16 3581chr20 148222 . G C 637 . AC=1;AF=0.250;AN=4;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=-2.580e-01;MQ_DP=44;QD=15.16;ReadPosRankSum=0.446;SOR=0.700;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:33:52:28:0,52,854 0/1:21,23:44:99:.:667,0,575:11,10,11,12 3582chr20 148422 . A G 695 . AC=1;AF=0.250;AN=4;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=1.53;MQ_DP=41;QD=17.68;ReadPosRankSum=-1.015e+00;SOR=0.537;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:33:52:28:0,52,854 0/1:15,26:41:99:.:725,0,429:5,10,10,16 3583chr20 148972 . G A 1696 . AC=4;AF=1.00;AN=4;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=52;QD=33.84;SOR=1.094;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,25:25:75:813,75,0:0,0,13,12 1/1:0,26:26:78:913,78,0:0,0,17,9 3584chr20 149223 . C T 930 . AC=2;AF=0.500;AN=4;DP=71;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.980;MQ_DP=71;QD=13.91;ReadPosRankSum=1.35;SOR=0.752;VarDP=69 GT:AD:DP:GQ:PL:SB 0/1:12,17:29:99:504,0,330:8,4,9,8 0/1:24,16:40:99:456,0,659:10,14,8,8 3585chr20 149492 . C T 222 . AC=1;AF=0.250;AN=4;DP=50;ExcessHet=3.0103;FS=3.771;MQ=60.00;MQRankSum=-2.600e-02;MQ_DP=27;QD=9.33;ReadPosRankSum=1.98;SOR=1.317;VarDP=27 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:30:25:23:0,25,709 0/1:18,9:27:99:.:252,0,514:10,8,3,6 3586chr20 150721 . C T 718 . AC=2;AF=0.500;AN=4;DP=59;ExcessHet=4.7712;FS=2.223;MQ=60.00;MQRankSum=-6.690e-01;MQ_DP=59;QD=13.12;ReadPosRankSum=1.09;SOR=0.578;VarDP=57 GT:AD:DP:GQ:PL:SB 0/1:11,10:21:99:295,0,289:5,6,7,3 0/1:21,15:36:99:453,0,602:13,8,5,10 3587chr20 150854 . T C 1757 . AC=4;AF=1.00;AN=4;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=54;QD=33.09;SOR=0.846;VarDP=54 GT:AD:DP:GQ:PL:SB 1/1:0,26:26:78:874,78,0:0,0,12,14 1/1:0,28:28:83:913,83,0:0,0,13,15 3588chr20 150864 . CTCT C 943.97 . AC=2;AF=0.500;AN=4;DP=58;ExcessHet=4.7712;FS=2.266;MQ=60.00;MQRankSum=0.229;MQ_DP=58;QD=17.87;ReadPosRankSum=0.971;SOR=0.420;VarDP=55 GT:AD:DP:GQ:PL:SB 0/1:14,16:30:99:608,0,519:7,7,8,8 0/1:15,10:25:99:375,0,600:5,10,5,5 3589chr20 151016 . A G 1993 . AC=4;AF=1.00;AN=4;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=65;QD=31.61;SOR=1.127;VarDP=64 GT:AD:DP:GQ:PL:SB 1/1:0,28:28:84:857,84,0:0,0,19,9 1/1:0,36:36:99:1166,108,0:0,0,19,17 3590chr20 151307 . C CCA 891.97 . AC=2;AF=0.500;AN=4;DP=70;ExcessHet=4.7712;FS=0.988;MQ=60.00;MQRankSum=0.288;MQ_DP=70;QD=15.52;ReadPosRankSum=-2.600e-01;SOR=0.724;VarDP=60 GT:AD:DP:GQ:PL:SB 0/1:17,12:29:99:354,0,542:10,7,8,4 0/1:13,18:31:99:577,0,373:4,9,8,10 3591chr20 151663 . TA T 1653.97 . AC=4;AF=1.00;AN=4;DP=67;ExcessHet=3.0103;FS=0.000;MQ=59.80;MQ_DP=67;QD=28.22;SOR=1.160;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,39:39:99:1101,117,0:0,0,21,18 1/1:0,21:21:63:592,63,0:0,0,15,6 3592chr20 152134 . T C 510 . AC=1;AF=0.250;AN=4;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=-1.205e+00;MQ_DP=31;QD=18.00;ReadPosRankSum=0.086;SOR=0.665;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0/1:11,19:30:99:.:540,0,282:5,6,10,9 0/0:.:31:35:20:0,35,600 3593chr20 152450 . CAAA C,CAAAA 1118.97 . AC=2,2;AF=0.500,0.500;AN=4;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=-2.480e-01;MQ_DP=50;QD=29.69;ReadPosRankSum=1.19;SOR=0.446;VarDP=39 GT:AD:DP:GQ:PL:SB 1/2:0,10,8:18:99:523,155,340,393,0,373:0,0,10,8 1/2:1,13,7:21:99:635,123,293,517,0,519:1,0,13,7 3594chr20 152517 . T A 2011 . AC=4;AF=1.00;AN=4;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=58;QD=35.81;SOR=0.960;VarDP=57 GT:AD:DP:GQ:PL:SB 1/1:0,21:21:63:730,63,0:0,0,12,9 1/1:0,36:36:99:1311,108,0:0,0,20,16 3595chr20 152792 . A C 905 . AC=2;AF=0.500;AN=4;DP=68;ExcessHet=4.7712;FS=2.068;MQ=60.00;MQRankSum=1.27;MQ_DP=68;QD=13.96;ReadPosRankSum=-1.172e+00;SOR=0.426;VarDP=67 GT:AD:DP:GQ:PL:SB 0/1:14,18:32:99:450,0,391:5,9,10,8 0/1:18,17:35:99:485,0,530:7,11,6,11 3596chr20 153098 . G GT 436.97 . AC=2;AF=0.500;AN=4;DP=55;ExcessHet=4.7712;FS=7.877;MQ=60.00;MQRankSum=0.275;MQ_DP=55;QD=9.15;ReadPosRankSum=1.67;SOR=1.304;VarDP=52 GT:AD:DP:GQ:PL:SB 0/1:14,8:22:99:189,0,382:8,6,5,3 0/1:18,12:30:99:287,0,484:6,12,8,4 3597chr20 153259 . C G 835 . AC=2;AF=0.500;AN=4;DP=57;ExcessHet=4.7712;FS=9.804;MQ=60.00;MQRankSum=-7.530e-01;MQ_DP=57;QD=15.45;ReadPosRankSum=0.115;SOR=1.535;VarDP=56 GT:AD:DP:GQ:PL:SB 0/1:14,14:28:99:368,0,413:8,6,4,10 0/1:11,17:28:99:497,0,263:6,5,6,11 3598chr20 153376 . A G 851 . AC=2;AF=0.500;AN=4;DP=62;ExcessHet=4.7712;FS=5.105;MQ=60.00;MQRankSum=0.235;MQ_DP=62;QD=14.21;ReadPosRankSum=1.29;SOR=1.119;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:13,16:29:99:479,0,365:9,4,6,10 0/1:18,15:33:99:402,0,526:8,10,6,9 3599chr20 153555 . C T 1004 . AC=2;AF=0.500;AN=4;DP=72;ExcessHet=4.7712;FS=3.246;MQ=60.00;MQRankSum=-5.200e-02;MQ_DP=72;QD=14.56;ReadPosRankSum=1.12;SOR=1.101;VarDP=71 GT:AD:DP:GQ:PL:SB 0/1:18,16:34:99:514,0,503:11,7,12,4 0/1:20,17:37:99:520,0,564:11,9,10,7 3600chr20 153643 . T C 2352 . AC=4;AF=1.00;AN=4;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=72;QD=33.55;SOR=0.779;VarDP=71 GT:AD:DP:GQ:PL:SB 1/1:0,37:37:99:1251,111,0:0,0,21,16 1/1:0,34:34:99:1131,102,0:0,0,16,18 3601chr20 153725 . A G 1957 . AC=4;AF=1.00;AN=4;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=61;QD=33.12;SOR=0.760;VarDP=60 GT:AD:DP:GQ:PL:SB 1/1:0,31:31:93:1034,93,0:0,0,17,14 1/1:0,29:29:87:953,87,0:0,0,14,15 3602chr20 153759 . G A 396 . AC=1;AF=0.250;AN=4;DP=62;ExcessHet=3.0103;FS=3.155;MQ=60.00;MQRankSum=0.436;MQ_DP=30;QD=14.20;ReadPosRankSum=1.89;SOR=0.307;VarDP=30 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:35:21:32:0,21,315 0/1:14,16:30:99:.:426,0,386:5,9,8,8 3603chr20 153780 . C T 2781 . AC=4;AF=1.00;AN=4;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=66;QD=43.25;SOR=0.787;VarDP=65 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,35:35:99:0|1:153780_C_T:1523,105,0:0,0,21,14 1/1:0,30:30:90:0|1:153780_C_T:1288,90,0:0,0,13,17 3604chr20 153787 . CAAAAAAAAA C 2599.97 . AC=4;AF=1.00;AN=4;DP=63;ExcessHet=3.0103;FS=3.300;MQ=60.00;MQRankSum=1.24;MQ_DP=63;QD=42.56;SOR=0.485;VarDP=62 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,34:34:99:0|1:153780_C_T:1490,103,0:0,0,20,14 1/1:1,27:28:59:0|1:153780_C_T:1149,59,0:0,1,13,14 3605chr20 153835 . T C 2164 . AC=4;AF=1.00;AN=4;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=66;QD=33.75;SOR=0.787;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,37:37:99:1231,111,0:0,0,20,17 1/1:0,28:28:84:963,84,0:0,0,11,17 3606chr20 153898 . A T 220 . AC=1;AF=0.250;AN=4;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.344;MQ_DP=29;QD=8.62;ReadPosRankSum=0.168;SOR=0.963;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:28:50:23:0,50,720 0/1:19,10:29:99:.:250,0,563:9,10,4,6 3607chr20 154002 . C T 1797 . AC=4;AF=1.00;AN=4;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=53;QD=35.13;SOR=0.770;VarDP=52 GT:AD:DP:GQ:PL:SB 1/1:0,20:20:60:705,60,0:0,0,9,11 1/1:0,32:32:96:1122,96,0:0,0,18,14 3608chr20 154128 . T TA 167.97 . AC=1;AF=0.250;AN=4;DP=47;ExcessHet=3.0103;FS=3.139;MQ=60.00;MQRankSum=1.28;MQ_DP=25;QD=10.89;ReadPosRankSum=-1.775e+00;SOR=0.129;VarDP=19 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:27:34:22:0,34,659 0/1:8,11:19:99:.:207,0,112:8,0,9,2 3609chr20 154203 . T C 2013 . AC=4;AF=1.00;AN=4;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=66;QD=31.43;SOR=0.787;VarDP=65 GT:AD:DP:GQ:PL:SB 1/1:0,31:31:93:992,93,0:0,0,12,19 1/1:0,34:34:99:1051,101,0:0,0,19,15 3610chr20 154290 . T G 2333 . AC=4;AF=1.00;AN=4;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=70;QD=33.76;SOR=0.750;VarDP=70 GT:AD:DP:GQ:PL:SB 1/1:0,31:31:92:1017,92,0:0,0,20,11 1/1:0,39:39:99:1346,117,0:0,0,14,25 3611chr20 154474 . G GTT 3018.97 . AC=4;AF=1.00;AN=4;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=69;QD=45.64;SOR=0.849;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,26:26:81:0|1:154474_G_GTT:1214,81,0:0,0,13,13 1/1:0,41:41:99:0|1:154474_G_GTT:1844,123,0:0,0,18,23 3612chr20 154477 . C CAT 3154.97 . AC=4;AF=1.00;AN=4;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=68;QD=47.67;SOR=0.849;VarDP=67 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,27:27:84:0|1:154474_G_GTT:1260,84,0:0,0,13,14 1/1:0,40:40:99:0|1:154474_G_GTT:1934,129,0:0,0,18,22 3613chr20 154479 . C CACAGGAAGACTATAAATAACT 3694.97 . AC=4;AF=1.00;AN=4;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=70;QD=54.12;SOR=0.910;VarDP=69 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,27:27:99:0|1:154474_G_GTT:1530,102,0:0,0,12,15 1/1:0,42:42:99:0|1:154474_G_GTT:2204,147,0:0,0,19,23 3614chr20 154847 . C T 2364 . AC=4;AF=1.00;AN=4;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=71;QD=34.70;SOR=0.910;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,36:36:99:1228,108,0:0,0,15,21 1/1:0,33:33:99:1166,99,0:0,0,16,17 3615chr20 155384 . C T 427 . AC=1;AF=0.250;AN=4;DP=52;ExcessHet=3.0103;FS=1.356;MQ=60.00;MQRankSum=-2.700e-01;MQ_DP=33;QD=13.85;ReadPosRankSum=-3.780e-01;SOR=0.425;VarDP=33 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:28:21:19:0,21,651 0/1:17,16:33:99:.:457,0,482:7,10,8,8 3616chr20 155733 . G A 681 . AC=1;AF=0.250;AN=4;DP=60;ExcessHet=3.0103;FS=4.561;MQ=60.00;MQRankSum=-8.600e-01;MQ_DP=41;QD=17.34;ReadPosRankSum=1.02;SOR=0.871;VarDP=41 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:28:21:19:0,21,651 0/1:17,24:41:99:.:711,0,448:10,7,10,14 3617chr20 155813 . T C 434 . AC=1;AF=0.250;AN=4;DP=75;ExcessHet=3.0103;FS=1.323;MQ=60.00;MQRankSum=0.471;MQ_DP=37;QD=12.54;ReadPosRankSum=1.44;SOR=1.022;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:38:99:38:0,114,1311 0/1:18,19:37:99:.:464,0,526:11,7,13,6 3618chr20 155820 . G A 459 . AC=1;AF=0.500;AN=2;DP=30;ExcessHet=4.7712;FS=6.037;MQ=60.00;MQRankSum=-1.970e-01;MQ_DP=30;QD=16.86;ReadPosRankSum=-4.600e-01;SOR=0.124;VarDP=29 GT:AD:DP:GQ:PL:SB 0/1:13,16:29:99:489,0,365:10,3,8,8 ./. 3619chr20 156080 . T C 666 . AC=1;AF=0.250;AN=4;DP=72;ExcessHet=3.0103;FS=2.739;MQ=60.00;MQRankSum=-2.500e-01;MQ_DP=49;QD=14.20;ReadPosRankSum=0.651;SOR=0.368;VarDP=49 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:30:24:23:0,24,764 0/1:23,26:49:99:.:696,0,642:18,5,18,8 3620chr20 156287 . G GA 505.97 . AC=1;AF=0.250;AN=4;DP=64;ExcessHet=3.0103;FS=5.287;MQ=60.00;MQRankSum=1.34;MQ_DP=41;QD=13.63;ReadPosRankSum=0.246;SOR=1.841;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:30:24:23:0,24,764 0/1:17,23:40:99:.:545,0,391:7,10,5,18 3621chr20 156473 . A G 560 . AC=1;AF=0.250;AN=4;DP=68;ExcessHet=3.0103;FS=11.478;MQ=60.00;MQRankSum=0.534;MQ_DP=45;QD=13.11;ReadPosRankSum=-1.692e+00;SOR=1.874;VarDP=45 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:30:24:23:0,24,764 0/1:23,22:45:99:.:590,0,639:10,13,16,6 3622chr20 156486 . A G 1750 . AC=3;AF=0.750;AN=4;DP=79;ExcessHet=3.0103;FS=13.914;MQ=60.00;MQRankSum=-1.145e+00;MQ_DP=79;QD=22.53;ReadPosRankSum=0.160;SOR=0.643;VarDP=79 GT:AD:DP:GQ:PL:SB 1/1:0,32:32:96:1057,96,0:0,0,14,18 0/1:21,26:47:99:723,0,589:15,6,11,15 3623chr20 156669 . C A 488 . AC=1;AF=0.250;AN=4;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=-1.327e+00;MQ_DP=45;QD=11.77;ReadPosRankSum=-1.900e-01;SOR=0.715;VarDP=44 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:32:21:23:0,21,315 0/1:25,19:44:99:.:518,0,725:13,12,10,9 3624chr20 156813 . T G 440 . AC=1;AF=0.250;AN=4;DP=60;ExcessHet=3.0103;FS=1.273;MQ=60.00;MQRankSum=0.137;MQ_DP=37;QD=12.70;ReadPosRankSum=0.896;SOR=0.446;VarDP=37 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:32:21:23:0,21,315 0/1:19,18:37:99:.:470,0,568:8,11,9,9 3625chr20 156877 . GTA G 1884.97 . AC=4;AF=1.00;AN=4;DP=68;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQ_DP=68;QD=37.73;SOR=0.813;VarDP=51 GT:AD:DP:GQ:PL:SB 1/1:0,24:24:72:892,72,0:0,0,14,10 1/1:0,27:27:84:1032,84,0:0,0,13,14 3626chr20 156881 . A G 366 . AC=1;AF=0.250;AN=4;DP=65;ExcessHet=3.0103;FS=7.834;MQ=59.97;MQRankSum=0.763;MQ_DP=37;QD=11.65;ReadPosRankSum=1.35;SOR=0.829;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:28:66:28:0,66,990 0/1:19,15:34:99:.:396,0,536:6,13,9,6 3627chr20 157033 . G A 972 . AC=2;AF=0.500;AN=4;DP=66;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.717;MQ_DP=66;QD=15.66;ReadPosRankSum=0.982;SOR=0.690;VarDP=64 GT:AD:DP:GQ:PL:SB 0/1:14,18:32:99:509,0,369:10,4,8,10 0/1:15,17:32:99:493,0,380:4,11,10,7 3628chr20 157259 . T G 355 . AC=1;AF=0.250;AN=4;DP=52;ExcessHet=3.0103;FS=3.471;MQ=60.00;MQRankSum=-6.330e-01;MQ_DP=29;QD=13.28;ReadPosRankSum=-1.069e+00;SOR=1.574;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:30:35:23:0,35,814 0/1:15,14:29:99:.:385,0,435:8,7,10,4 3629chr20 157292 . C G 1995 . AC=4;AF=1.00;AN=4;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=56;QD=36.16;SOR=1.199;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,27:27:81:947,81,0:0,0,15,12 1/1:0,29:29:87:1078,87,0:0,0,19,10 3630chr20 157363 . G C 1872 . AC=4;AF=1.00;AN=4;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=56;QD=33.96;SOR=0.922;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,25:25:75:844,75,0:0,0,13,12 1/1:0,31:31:93:1058,93,0:0,0,12,19 3631chr20 157484 . G T 657 . AC=1;AF=0.250;AN=4;DP=60;ExcessHet=3.0103;FS=2.886;MQ=60.00;MQRankSum=0.852;MQ_DP=39;QD=17.62;ReadPosRankSum=1.14;SOR=0.616;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:27:30:21:0,30,450 0/1:15,24:39:99:.:687,0,379:6,9,13,11 3632chr20 157507 . C T 824 . AC=1;AF=0.250;AN=4;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=-1.384e+00;MQ_DP=38;QD=22.47;ReadPosRankSum=1.22;SOR=0.633;VarDP=38 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:27:30:21:0,30,450 0/1:11,27:38:99:.:854,0,278:5,6,14,13 3633chr20 157537 . GC G 738.97 . AC=2;AF=0.500;AN=4;DP=62;ExcessHet=4.7712;FS=0.960;MQ=60.00;MQRankSum=-3.700e-02;MQ_DP=62;QD=12.55;ReadPosRankSum=-1.620e-01;SOR=0.846;VarDP=62 GT:AD:DP:GQ:PL:SB 0/1:9,17:26:99:549,0,258:3,6,9,8 0/1:27,9:36:99:229,0,899:15,12,5,4 3634chr20 157819 . A G 337 . AC=1;AF=0.250;AN=4;DP=49;ExcessHet=3.0103;FS=1.569;MQ=60.00;MQRankSum=-1.920e-01;MQ_DP=25;QD=14.68;ReadPosRankSum=0.739;SOR=1.112;VarDP=25 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:28:21:24:0,21,315 0/1:11,14:25:99:.:367,0,305:6,5,9,5 3635chr20 157914 . T C 518 . AC=1;AF=0.250;AN=4;DP=48;ExcessHet=3.0103;FS=1.685;MQ=60.00;MQRankSum=1.26;MQ_DP=24;QD=22.83;ReadPosRankSum=-1.610e+00;SOR=1.329;VarDP=24 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/0:.:28:21:24:.:.:0,21,315 0/1:10,14:24:99:.:0|1:157914_T_C:548,0,378:5,5,9,5 3636chr20 157927 . ATATATGTG A 599.97 . AC=1;AF=0.500;AN=2;DP=27;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=-8.640e-01;MQ_DP=27;QD=23.67;ReadPosRankSum=-1.653e+00;SOR=0.551;VarDP=27 GT:AD:DP:GQ:PGT:PID:PL:SB ./. 0/1:11,16:27:99:0|1:157914_T_C:639,0,414:6,5,8,8 3637chr20 157929 . ATATGTGTG A 1502.97 . AC=3;AF=0.750;AN=4;DP=53;ExcessHet=3.0103;FS=1.155;MQ=60.00;MQRankSum=1.85;MQ_DP=53;QD=29.09;ReadPosRankSum=1.16;SOR=0.984;VarDP=53 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,26:26:78:0|1:157929_ATATGTGTG_A:1128,78,0:0,0,15,11 0/1:16,11:27:99:1|0:157914_T_C:414,0,639:8,8,6,5 3638chr20 157960 . T C 1734 . AC=3;AF=0.750;AN=4;DP=58;ExcessHet=3.0103;FS=4.060;MQ=60.00;MQRankSum=-7.790e-01;MQ_DP=58;QD=30.41;ReadPosRankSum=-4.560e-01;SOR=1.041;VarDP=58 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,26:26:84:0|1:157929_ATATGTGTG_A:1230,84,0:0,0,16,10 0/1:18,14:32:99:1|0:157914_T_C:534,0,714:8,10,8,6 3639chr20 157962 . T C 1734 . AC=3;AF=0.750;AN=4;DP=60;ExcessHet=3.0103;FS=4.016;MQ=60.00;MQRankSum=0.095;MQ_DP=60;QD=29.40;ReadPosRankSum=-4.560e-01;SOR=1.014;VarDP=60 GT:AD:DP:GQ:PGT:PID:PL:SB 1/1:0,28:28:84:0|1:157929_ATATGTGTG_A:1230,84,0:0,0,17,11 0/1:18,14:32:99:1|0:157914_T_C:534,0,714:8,10,8,6 3640chr20 157965 . A G 678 . AC=1;AF=0.250;AN=4;DP=54;ExcessHet=3.0103;FS=3.093;MQ=60.00;MQRankSum=-1.609e+00;MQ_DP=33;QD=21.45;ReadPosRankSum=0.982;SOR=0.685;VarDP=33 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/0:.:30:43:21:.:.:0,43,691 0/1:15,18:33:99:.:0|1:157914_T_C:708,0,618:9,6,8,10 3641chr20 157974 . G A 675 . AC=1;AF=0.250;AN=4;DP=56;ExcessHet=3.0103;FS=4.982;MQ=60.00;MQRankSum=0.050;MQ_DP=35;QD=20.14;ReadPosRankSum=1.77;SOR=1.022;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/0:.:30:43:21:.:.:0,43,691 0/1:17,18:35:99:.:0|1:157914_T_C:705,0,660:10,7,7,11 3642chr20 157979 . A C 675 . AC=1;AF=0.250;AN=4;DP=56;ExcessHet=3.0103;FS=4.982;MQ=60.00;MQRankSum=1.30;MQ_DP=35;QD=20.14;ReadPosRankSum=1.91;SOR=1.022;VarDP=35 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/0:.:30:43:21:.:.:0,43,691 0/1:17,18:35:99:.:0|1:157914_T_C:705,0,660:10,7,7,11 3643chr20 158513 . A G 417 . AC=1;AF=0.250;AN=4;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.952;MQ_DP=30;QD=15.41;ReadPosRankSum=-5.090e-01;SOR=0.896;VarDP=29 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:30:43:21:0,43,691 0/1:12,17:29:99:.:447,0,320:4,8,5,12 3644chr20 158532 . T C 438 . AC=1;AF=0.250;AN=4;DP=53;ExcessHet=3.0103;FS=1.402;MQ=60.00;MQRankSum=-1.790e-01;MQ_DP=32;QD=15.10;ReadPosRankSum=0.695;SOR=1.022;VarDP=31 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:30:43:21:0,43,691 0/1:14,17:31:99:.:468,0,403:6,8,6,11 3645chr20 158721 . G A 1421 . AC=3;AF=0.750;AN=4;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=-1.356e+00;MQ_DP=69;QD=21.03;ReadPosRankSum=0.614;SOR=0.804;VarDP=69 GT:AD:DP:GQ:PL:SB 1/1:0,30:30:90:1052,90,0:0,0,20,10 0/1:23,16:39:99:399,0,633:14,9,9,7 3646chr20 158768 . G A 719 . AC=1;AF=0.250;AN=4;DP=67;ExcessHet=3.0103;FS=1.258;MQ=60.00;MQRankSum=0.643;MQ_DP=41;QD=18.73;ReadPosRankSum=-2.800e-02;SOR=0.983;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:30:63:26:0,63,863 0/1:15,25:40:99:.:749,0,342:8,7,15,10 3647chr20 158815 . G A 476 . AC=1;AF=0.250;AN=4;DP=60;ExcessHet=3.0103;FS=1.356;MQ=60.00;MQRankSum=0.517;MQ_DP=34;QD=14.88;ReadPosRankSum=-6.900e-02;SOR=0.567;VarDP=34 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:30:63:26:0,63,863 0/1:17,17:34:99:.:506,0,468:7,10,9,8 3648chr20 158935 . C A 554 . AC=1;AF=0.250;AN=4;DP=66;ExcessHet=3.0103;FS=4.677;MQ=60.00;MQRankSum=-2.950e-01;MQ_DP=40;QD=14.97;ReadPosRankSum=0.716;SOR=1.204;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:30:63:26:0,63,863 0/1:20,19:39:99:.:584,0,523:11,9,7,12 3649chr20 159104 . T C 1898 . AC=4;AF=1.00;AN=4;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=55;QD=35.05;SOR=0.729;VarDP=55 GT:AD:DP:GQ:PL:SB 1/1:0,27:27:81:946,81,0:0,0,11,16 1/1:0,28:28:84:982,84,0:0,0,16,12 3650chr20 159200 . A T 1553 . AC=3;AF=0.750;AN=4;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=1.38;MQ_DP=66;QD=23.98;ReadPosRankSum=-3.550e-01;SOR=0.604;VarDP=66 GT:AD:DP:GQ:PL:SB 1/1:0,25:25:75:878,75,0:0,0,17,8 0/1:18,23:41:99:705,0,522:13,5,16,7 3651chr20 159274 . T TAA,TAAAAAA 2335.97 . AC=3,1;AF=0.750,0.250;AN=4;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=67;QD=42.41;SOR=1.302;VarDP=56 GT:AD:DP:GQ:PL:SB 1/1:0,21,0:21:72:846,72,0,846,72,846:0,0,11,10 1/2:0,19,16:35:99:1529,856,793,672,0,735:0,0,24,11 3652chr20 159286 . G A 757 . AC=1;AF=0.250;AN=4;DP=69;ExcessHet=3.0103;FS=12.377;MQ=60.00;MQRankSum=0.730;MQ_DP=43;QD=18.74;ReadPosRankSum=-7.300e-01;SOR=2.154;VarDP=42 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:27:9:26:0,9,735 0/1:21,21:42:99:.:787,0,787:9,12,16,5 3653chr20 159445 . G A 1221 . AC=2;AF=0.500;AN=4;DP=74;ExcessHet=4.7712;FS=1.971;MQ=60.00;MQRankSum=0.119;MQ_DP=74;QD=16.91;ReadPosRankSum=0.111;SOR=0.439;VarDP=74 GT:AD:DP:GQ:PL:SB 0/1:15,23:38:99:665,0,356:6,9,13,10 0/1:16,20:36:99:586,0,448:6,10,7,13 3654chr20 159495 . G GAATGGCATAAACT 888.97 . AC=1;AF=0.250;AN=4;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=-6.700e-01;MQ_DP=45;QD=21.58;ReadPosRankSum=-1.838e+00;SOR=0.616;VarDP=43 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:31:67:26:0,67,930 0/1:23,20:43:99:.:928,0,894:11,12,10,10 3655chr20 159530 . A G 615 . AC=1;AF=0.250;AN=4;DP=67;ExcessHet=3.0103;FS=2.699;MQ=60.00;MQRankSum=0.938;MQ_DP=41;QD=16.13;ReadPosRankSum=-1.319e+00;SOR=0.368;VarDP=40 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:31:67:26:0,67,930 0/1:18,22:40:99:.:645,0,495:11,7,11,11 3656chr20 159639 . C T 1676 . AC=3;AF=0.750;AN=4;DP=80;ExcessHet=3.0103;FS=2.055;MQ=60.00;MQRankSum=0.173;MQ_DP=80;QD=22.16;ReadPosRankSum=1.36;SOR=0.777;VarDP=77 GT:AD:DP:GQ:PL:SB 1/1:1,39:40:86:1311,86,0:1,0,21,18 0/1:23,14:37:99:395,0,678:10,13,8,6 3657chr20 159755 . TTTG T 3218.97 . AC=4;AF=1.00;AN=4;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQ_DP=85;QD=44.03;SOR=0.804;VarDP=74 GT:AD:DP:GQ:PL:SB 1/1:0,30:30:90:1339,90,0:0,0,16,14 1/1:0,44:44:99:1919,132,0:0,0,23,21 3658chr20 159864 . C T 780 . AC=1;AF=0.250;AN=4;DP=59;ExcessHet=3.0103;FS=1.164;MQ=60.00;MQRankSum=-8.080e-01;MQ_DP=45;QD=18.00;ReadPosRankSum=-2.628e+00;SOR=0.518;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/0:.:25:22:14:.:.:0,22,487 0/1:24,21:45:99:.:0|1:159864_C_T:810,0,1167:8,16,8,13 3659chr20 159865 . A G 780 . AC=1;AF=0.250;AN=4;DP=59;ExcessHet=3.0103;FS=1.164;MQ=60.00;MQRankSum=-1.149e+00;MQ_DP=45;QD=18.00;ReadPosRankSum=-2.628e+00;SOR=0.518;VarDP=45 GT:AD:DP:GQ:MIN_DP:PGT:PID:PL:SB 0/0:.:25:22:14:.:.:0,22,487 0/1:24,21:45:99:.:0|1:159864_C_T:810,0,1167:8,16,8,13 3660chr20 159952 . AG A 733.97 . AC=1;AF=0.250;AN=4;DP=53;ExcessHet=3.0103;FS=1.261;MQ=60.00;MQRankSum=-5.520e-01;MQ_DP=39;QD=19.82;ReadPosRankSum=0.241;SOR=0.425;VarDP=39 GT:AD:DP:GQ:MIN_DP:PL:SB 0/0:.:25:22:14:0,22,487 0/1:17,22:39:99:.:773,0,551:7,10,11,11 3661