1 /* vim: set ts=2: */ 2 /** 3 * Copyright (c) 2006 The Regents of the University of California. 4 * All rights reserved. 5 * 6 * Redistribution and use in source and binary forms, with or without 7 * modification, are permitted provided that the following conditions 8 * are met: 9 * 1. Redistributions of source code must retain the above copyright 10 * notice, this list of conditions, and the following disclaimer. 11 * 2. Redistributions in binary form must reproduce the above 12 * copyright notice, this list of conditions, and the following 13 * disclaimer in the documentation and/or other materials provided 14 * with the distribution. 15 * 3. Redistributions must acknowledge that this software was 16 * originally developed by the UCSF Computer Graphics Laboratory 17 * under support by the NIH National Center for Research Resources, 18 * grant P41-RR01081. 19 * 20 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER "AS IS" AND ANY 21 * EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 22 * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR 23 * PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS BE LIABLE 24 * FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 25 * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT 26 * OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR 27 * BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, 28 * WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE 29 * OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, 30 * EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. 31 * 32 */ 33 package ext.edu.ucsf.rbvi.strucviz2; 34 35 /** 36 * This object maintains the relationship between Chimera objects and Cytoscape 37 * objects. 38 */ 39 public class StructureSettings 40 { 41 42 // @Tunable(description = "Path to UCSF Chimera application", gravity = 4.0) 43 public String chimeraPath = null; 44 StructureSettings(StructureManager manager)45 public StructureSettings(StructureManager manager) 46 { 47 48 chimeraPath = manager.getCurrentChimeraPath(null); 49 50 // This seems a little strange, but it has to do with the order of tunable 51 // interceptor 52 // handling. We need to set these selectors in our structure manager and 53 // dynamically 54 // pull the data out as needed.... 55 manager.setStructureSettings(this); 56 } 57 getChimeraPath()58 public String getChimeraPath() 59 { 60 return chimeraPath; 61 } 62 } 63