1Seq-annot ::= { 2 desc { 3 user { 4 type str "Track Data", 5 data { 6 } 7 }, 8 user { 9 type str "vcf-meta-info", 10 data { 11 { 12 label str "meta-information", 13 num 8, 14 data strs { 15 "fileformat=VCFv4.1", 16 "INFO=<ID=DB,Number=0,Type=Flag,Description=""dbSNP Membership"">", 17 "INFO=<ID=H2,Number=0,Type=Flag,Description=""Hapmap2 Membership"">", 18 "INFO=<ID=H3,Number=0,Type=Flag,Description=""Hapmap3 Membership"">", 19 "INFO=<ID=RL,Number=1,Type=String,Description=""Resource Link"">", 20 "INFO=<ID=FBV,Number=1,Type=String,Description=""Frequency Based 21 Validation"">", 22 "INFO=<ID=GTP,Number=1,Type=String,Description=""Genotype"">", 23 "INFO=<ID=QC,Number=1,Type=String,Description=""Quality Check"">" 24 } 25 } 26 } 27 } 28 }, 29 data ftable { 30 { 31 data variation { 32 id { 33 db "dbSNP", 34 tag str "rs000" 35 }, 36 variant-prop { 37 version 5, 38 resource-link preserved, 39 gene-location 0, 40 effect no-change, 41 mapping 0, 42 frequency-based-validation 0, 43 genotype 0, 44 quality-check 0 45 }, 46 data set { 47 type package, 48 variations { 49 { 50 data instance { 51 type identity, 52 delta { 53 { 54 seq literal { 55 length 2, 56 seq-data iupacna "AA" 57 } 58 } 59 }, 60 observation reference 61 } 62 }, 63 { 64 data instance { 65 type delins, 66 delta { 67 { 68 seq literal { 69 length 1, 70 seq-data iupacna "T" 71 } 72 } 73 } 74 } 75 }, 76 { 77 data instance { 78 type del, 79 delta { 80 { 81 seq this NULL, 82 action del-at 83 } 84 } 85 } 86 }, 87 { 88 data instance { 89 type delins, 90 delta { 91 { 92 seq literal { 93 length 1, 94 seq-data iupacna "G" 95 } 96 } 97 } 98 } 99 }, 100 { 101 data instance { 102 type delins, 103 delta { 104 { 105 seq literal { 106 length 1, 107 seq-data iupacna "C" 108 } 109 } 110 } 111 } 112 } 113 } 114 } 115 }, 116 location int { 117 from 1, 118 to 2, 119 id other { 120 accession "NC_000008", 121 version 10 122 } 123 }, 124 ext { 125 type str "VcfAttributes", 126 data { 127 { 128 label str "filter", 129 data str "PASS" 130 }, 131 { 132 label str "info", 133 data str "DB" 134 } 135 } 136 } 137 } 138 } 139} 140