Tests - OpenGrok cross reference for /dports/biology/py-biopython/biopython-1.79/Tests/

Name		Date	Size	#Lines	LOC
..		03-Jun-2021	-
Abi/	H	03-May-2022	-	55	53
Ace/	H	03-Jun-2021	-	1,436	1,346
Affy/	H	03-May-2022	-	75	69
Align/	H	03-May-2022	-	1,045	1,039
BWA/	H	03-Jun-2021	-	4,803	4,800
BioSQL/	H	03-May-2022	-	2,356	1,144
Blast/	H	03-May-2022	-	109,044	108,988
Blat/	H	03-May-2022	-	223	197
CDAO/	H	03-Jun-2021	-	961	960
Cellosaurus/	H	03-May-2022	-
Clustalw/	H	03-Jun-2021	-	548	459
Cluster/	H	03-May-2022	-	14	12
CodonUsage/	H	03-May-2022	-
Compass/	H	03-Jun-2021	-	83	58
EMBL/	H	03-Jun-2021	-	3,934	3,910
Emboss/	H	03-May-2022	-	1,965	1,159
Entrez/	H	03-May-2022	-	10,288	10,096
Enzymes/	H	03-May-2022	-
Exonerate/	H	03-May-2022	-	3,265	2,587
ExtendedPhylip/	H	03-Jun-2021	-	235	217
FSSP/	H	03-Jun-2021	-	7,498	7,480
Fasta/	H	03-May-2022	-	4,741	4,543
GFF/	H	03-Jun-2021	-	835	830
Gck/	H	03-May-2022	-
GenBank/	H	03-May-2022	-	15,461	15,307
Geo/	H	03-May-2022	-
Graphics/	H	03-Jun-2021	-	3	2
HHsuite/	H	03-May-2022	-	3,589	2,851
Hmmer/	H	03-May-2022	-	12,225	10,599
IntelliGenetics/	H	03-May-2022	-
InterProScan/	H	03-Jun-2021	-	215	214
KEGG/	H	03-May-2022	-	43,485	43,469
MAF/	H	03-May-2022	-	44,251	43,155
Mauve/	H	03-Jun-2021	-	820	814
Medline/	H	03-May-2022	-
MetaTool/	H	03-Jun-2021	-	1,879	1,543
NBRF/	H	03-Jun-2021	-	9,264	8,692
NMR/	H	03-Jun-2021	-	35	33
NeXML/	H	03-Jun-2021	-	3,390	3,169
NeuralNetwork/	H	03-Jun-2021	-	28	25
Nexus/	H	03-Jun-2021	-	1,164	1,113
Nib/	H	03-May-2022	-	6	4
PAML/	H	03-Jun-2021	-	29,429	22,561
PDB/	H	07-May-2022	-	69,106	69,085
PQR/	H	03-Jun-2021	-	1,424	1,423
Phd/	H	03-Jun-2021	-	3,439	3,407
Phylip/	H	03-Jun-2021	-	136	121
PhyloXML/	H	03-Jun-2021	-	7,855	7,850
PopGen/	H	03-Jun-2021	-	827	819
Prosite/Doc/	H	03-May-2022	-	253	220
Quality/	H	03-May-2022	-	1,111	1,042
Rebase/	H	03-May-2022	-	721	709
Registry/	H	03-Jun-2021	-	217	187
Roche/	H	03-May-2022	-	232	228
SCOP/	H	03-May-2022	-	163	132
Saf/	H	03-May-2022	-
SamBam/	H	03-May-2022	-	7,008	7,003
SeqXML/	H	03-Jun-2021	-	115	112
SnapGene/	H	03-May-2022	-
Stockholm/	H	03-Jun-2021	-	43	40
SubsMat/	H	03-May-2022	-	632	632
SwissProt/	H	03-May-2022	-	15,559	15,514
TreeConstruction/	H	03-May-2022	-	38	28
TwoBit/	H	03-May-2022	-	33	32
UniGene/	H	03-Jun-2021	-	259	256
UniProt/	H	03-Jun-2021	-	1,594	1,589
Wise/	H	03-Jun-2021	-	6	4
Xdna/	H	03-May-2022	-
codonalign/	H	03-Jun-2021	-	2,794	2,651
motifs/	H	03-May-2022	-	13,291	13,108
msf/	H	03-Jun-2021	-	161	108
phenotype/	H	03-Jun-2021	-	1,209	1,207
.coveragerc	H A D	01-Jun-2021	582	19	15
biosql.ini.appveyor	H A D	01-Jun-2021	795	28	25
biosql.ini.sample	H A D	01-Jun-2021	706	27	24
common_BioSQL.py	H A D	01-Jun-2021	65.2 KiB	1,701	1,367
common_BioSQL_online.py	H A D	01-Jun-2021	4.3 KiB	130	84
pairwise2_testCases.py	H A D	01-Jun-2021	26.5 KiB	915	792
requires_internet.py	H A D	01-Jun-2021	1.2 KiB	35	18
requires_wise.py	H A D	01-Jun-2021	936	29	15
run_tests.py	H A D	01-Jun-2021	12.7 KiB	376	279
search_tests_common.py	H A D	01-Jun-2021	6.3 KiB	159	106
seq_tests_common.py	H A D	01-Jun-2021	12.6 KiB	294	210
test_Ace.py	H A D	01-Jun-2021	119.1 KiB	2,180	2,035
test_Affy.py	H A D	01-Jun-2021	13.3 KiB	343	316
test_AlignIO.py	H A D	01-Jun-2021	63 KiB	1,505	1,398
test_AlignIO_ClustalIO.py	H A D	01-Jun-2021	11.7 KiB	241	179
test_AlignIO_EmbossIO.py	H A D	01-Jun-2021	15 KiB	416	332
test_AlignIO_FastaIO.py	H A D	01-Jun-2021	43.2 KiB	892	873
test_AlignIO_MauveIO.py	H A D	01-Jun-2021	5.1 KiB	122	94
test_AlignIO_PhylipIO.py	H A D	01-Jun-2021	8.6 KiB	227	183
test_AlignIO_convert.py	H A D	01-Jun-2021	3.6 KiB	99	80
test_AlignInfo.py	H A D	01-Jun-2021	6.5 KiB	169	140
test_Application.py	H A D	01-Jun-2021	4.2 KiB	126	102
test_BWA_tool.py	H A D	01-Jun-2021	7.7 KiB	211	166
test_BioSQL_MySQLdb.py	H A D	01-Jun-2021	784	27	11
test_BioSQL_MySQLdb_online.py	H A D	01-Jun-2021	997	34	16
test_BioSQL_mysql_connector.py	H A D	01-Jun-2021	802	28	11
test_BioSQL_mysql_connector_online.py	H A D	01-Jun-2021	1,005	34	16
test_BioSQL_psycopg2.py	H A D	01-Jun-2021	779	26	11
test_BioSQL_psycopg2_online.py	H A D	01-Jun-2021	999	33	16
test_BioSQL_sqlite3.py	H A D	01-Jun-2021	2.6 KiB	81	50
test_BioSQL_sqlite3_online.py	H A D	01-Jun-2021	1 KiB	38	19
test_Blast_Record.py	H A D	01-Jun-2021	1 KiB	39	23
test_CAPS.py	H A D	01-Jun-2021	3.6 KiB	94	75
test_Chi2.py	H A D	01-Jun-2021	1.1 KiB	31	18
test_ClustalOmega_tool.py	H A D	01-Jun-2021	8.1 KiB	232	162
test_Clustalw_tool.py	H A D	01-Jun-2021	11.6 KiB	324	217
test_Cluster.py	H A D	01-Jun-2021	108.6 KiB	3,103	2,840
test_CodonTable.py	H A D	01-Jun-2021	34.3 KiB	823	694
test_ColorSpiral.py	H A D	01-Jun-2021	4.1 KiB	128	96
test_Compass.py	H A D	01-Jun-2021	3.9 KiB	104	75
test_Consensus.py	H A D	01-Jun-2021	6.9 KiB	165	114
test_Dialign_tool.py	H A D	01-Jun-2021	4.6 KiB	118	92
test_EMBL_unittest.py	H A D	01-Jun-2021	3 KiB	81	58
test_Emboss.py	H A D	01-Jun-2021	37 KiB	963	736
test_EmbossPhylipNew.py	H A D	01-Jun-2021	12.6 KiB	353	252
test_EmbossPrimer.py	H A D	01-Jun-2021	9.1 KiB	196	149
test_Entrez.py	H A D	01-Jun-2021	11.2 KiB	338	248
test_Entrez_online.py	H A D	01-Jun-2021	9.4 KiB	267	214
test_Entrez_parser.py	H A D	01-Jun-2021	566.3 KiB	12,012	11,710
test_Enzyme.py	H A D	01-Jun-2021	6.2 KiB	143	124
test_ExPASy.py	H A D	01-Jun-2021	1.7 KiB	58	37
test_Fasttree_tool.py	H A D	01-Jun-2021	5.8 KiB	168	119
test_File.py	H A D	01-Jun-2021	4 KiB	131	97
test_GenBank.py	H A D	01-Jun-2021	365.8 KiB	8,456	8,183
test_GenomeDiagram.py	H A D	01-Jun-2021	46.3 KiB	1,315	1,030
test_GraphicsBitmaps.py	H A D	01-Jun-2021	4.1 KiB	134	87
test_GraphicsChromosome.py	H A D	01-Jun-2021	37.8 KiB	489	358
test_GraphicsDistribution.py	H A D	01-Jun-2021	2.6 KiB	87	56
test_GraphicsGeneral.py	H A D	01-Jun-2021	2.5 KiB	73	48
test_HMMCasino.py	H A D	01-Jun-2021	4.7 KiB	137	97
test_HMMGeneral.py	H A D	01-Jun-2021	15.3 KiB	425	299
test_KEGG.py	H A D	01-Jun-2021	7.5 KiB	196	169
test_KEGG_online.py	H A D	01-Jun-2021	10.1 KiB	270	208
test_KGML_graphics.py	H A D	01-Jun-2021	7.8 KiB	198	133
test_KGML_graphics_online.py	H A D	01-Jun-2021	2.7 KiB	89	51
test_KGML_nographics.py	H A D	01-Jun-2021	4.8 KiB	135	95
test_KeyWList.py	H A D	01-Jun-2021	5.8 KiB	125	101
test_LogisticRegression.py	H A D	01-Jun-2021	4.1 KiB	126	96
test_MSAProbs_tool.py	H A D	01-Jun-2021	5.5 KiB	168	122
test_MafIO_index.py	H A D	01-Jun-2021	31.3 KiB	734	605
test_Mafft_tool.py	H A D	01-Jun-2021	7.4 KiB	190	153
test_MarkovModel.py	H A D	01-Jun-2021	22.6 KiB	596	532
test_Medline.py	H A D	01-Jun-2021	20 KiB	369	353
test_Muscle_tool.py	H A D	01-Jun-2021	17.4 KiB	441	378
test_NCBITextParser.py	H A D	01-Jun-2021	1.3 MiB	14,768	14,605
test_NCBIXML.py	H A D	01-Jun-2021	176.2 KiB	4,129	3,775
test_NCBI_BLAST_tools.py	H A D	01-Jun-2021	16.5 KiB	462	379
test_NCBI_qblast.py	H A D	01-Jun-2021	16.1 KiB	387	304
test_NMR.py	H A D	01-Jun-2021	4.9 KiB	130	93
test_NaiveBayes.py	H A D	01-Jun-2021	4.1 KiB	137	102
test_Nexus.py	H A D	01-Jun-2021	41 KiB	1,209	1,130
test_PAML_baseml.py	H A D	01-Jun-2021	12 KiB	304	256
test_PAML_codeml.py	H A D	01-Jun-2021	26.2 KiB	580	486
test_PAML_tools.py	H A D	01-Jun-2021	4.7 KiB	138	101
test_PAML_yn00.py	H A D	01-Jun-2021	7 KiB	180	133
test_PDBList.py	H A D	01-Jun-2021	5.4 KiB	155	116
test_PDB_DSSP.py	H A D	01-Jun-2021	9.6 KiB	247	167
test_PDB_Dice.py	H A D	01-Jun-2021	2.1 KiB	61	38
test_PDB_Disordered.py	H A D	01-Jun-2021	7.4 KiB	218	139
test_PDB_Exposure.py	H A D	01-Jun-2021	5.2 KiB	131	99
test_PDB_FragmentMapper.py	H A D	01-Jun-2021	1.3 KiB	45	27
test_PDB_KDTree.py	H A D	01-Jun-2021	7.6 KiB	192	148
test_PDB_MMCIF2Dict.py	H A D	01-Jun-2021	16.5 KiB	330	283
test_PDB_MMCIFIO.py	H A D	01-Jun-2021	7.8 KiB	219	165
test_PDB_MMCIFParser.py	H A D	01-Jun-2021	15.8 KiB	393	270
test_PDB_NACCESS.py	H A D	01-Jun-2021	2.4 KiB	73	42
test_PDB_PDBIO.py	H A D	01-Jun-2021	11.7 KiB	343	249
test_PDB_PDBParser.py	H A D	01-Jun-2021	28.8 KiB	653	581
test_PDB_Polypeptide.py	H A D	01-Jun-2021	6.6 KiB	188	141
test_PDB_ResidueDepth.py	H A D	01-Jun-2021	4.4 KiB	120	78
test_PDB_SASA.py	H A D	01-Jun-2021	5.5 KiB	160	111
test_PDB_SMCRA.py	H A D	01-Jun-2021	18 KiB	522	405
test_PDB_StructureAlignment.py	H A D	01-Jun-2021	1.7 KiB	49	30
test_PDB_Superimposer.py	H A D	01-Jun-2021	6.3 KiB	120	97
test_PDB_internal_coords.py	H A D	01-Jun-2021	8.8 KiB	229	189
test_PDB_parse_pdb_header.py	H A D	01-Jun-2021	7.6 KiB	183	154
test_PDB_vectors.py	H A D	01-Jun-2021	9.2 KiB	243	203
test_PQR.py	H A D	01-Jun-2021	7.1 KiB	189	121
test_Pathway.py	H A D	01-Jun-2021	8.3 KiB	209	180
test_Phd.py	H A D	01-Jun-2021	20 KiB	482	441
test_Phylo.py	H A D	01-Jun-2021	20.7 KiB	506	408
test_PhyloXML.py	H A D	01-Jun-2021	29.1 KiB	785	654
test_Phylo_CDAO.py	H A D	01-Jun-2021	3.3 KiB	113	71
test_Phylo_NeXML.py	H A D	01-Jun-2021	3.2 KiB	111	84
test_Phylo_matplotlib.py	H A D	01-Jun-2021	3.6 KiB	106	73
test_Phylo_networkx.py	H A D	01-Jun-2021	1.2 KiB	42	23
test_PopGen_GenePop.py	H A D	01-Jun-2021	3.6 KiB	106	73
test_PopGen_GenePop_EasyController.py	H A D	01-Jun-2021	4.2 KiB	124	80
test_PopGen_GenePop_nodepend.py	H A D	01-Jun-2021	7.2 KiB	214	178
test_Prank_tool.py	H A D	01-Jun-2021	8.2 KiB	228	176
test_Probcons_tool.py	H A D	01-Jun-2021	3.8 KiB	98	79
test_ProtParam.py	H A D	01-Jun-2021	11.7 KiB	239	190
test_QCPSuperimposer.py	H A D	01-Jun-2021	7.9 KiB	251	216
test_RCSBFormats.py	H A D	01-Jun-2021	2.5 KiB	73	45
test_Restriction.py	H A D	01-Jun-2021	23.5 KiB	605	502
test_SCOP_Astral.py	H A D	01-Jun-2021	2.2 KiB	60	37
test_SCOP_Cla.py	H A D	01-Jun-2021	3.3 KiB	91	63
test_SCOP_Des.py	H A D	01-Jun-2021	1.8 KiB	55	37
test_SCOP_Dom.py	H A D	01-Jun-2021	1.7 KiB	55	36
test_SCOP_Hie.py	H A D	01-Jun-2021	1.3 KiB	42	26
test_SCOP_Raf.py	H A D	01-Jun-2021	4.1 KiB	103	71
test_SCOP_Residues.py	H A D	01-Jun-2021	2.3 KiB	71	52
test_SCOP_Scop.py	H A D	01-Jun-2021	5.3 KiB	154	100
test_SCOP_online.py	H A D	01-Jun-2021	637	28	13
test_SVDSuperimposer.py	H A D	01-Jun-2021	4.3 KiB	134	111
test_SearchIO_blast_tab.py	H A D	01-Jun-2021	39.5 KiB	987	803
test_SearchIO_blast_tab_index.py	H A D	01-Jun-2021	9.5 KiB	175	143
test_SearchIO_blast_text.py	H A D	01-Jun-2021	108.9 KiB	2,524	2,330
test_SearchIO_blast_xml.py	H A D	01-Jun-2021	169 KiB	4,074	3,621
test_SearchIO_blast_xml_index.py	H A D	01-Jun-2021	37.2 KiB	767	741
test_SearchIO_blat_psl.py	H A D	01-Jun-2021	59.1 KiB	1,332	1,164
test_SearchIO_blat_psl_index.py	H A D	01-Jun-2021	2.5 KiB	72	49
test_SearchIO_exonerate.py	H A D	01-Jun-2021	103.1 KiB	2,558	2,305
test_SearchIO_exonerate_text_index.py	H A D	01-Jun-2021	956	32	17
test_SearchIO_exonerate_vulgar_index.py	H A D	01-Jun-2021	969	32	17
test_SearchIO_fasta_m10.py	H A D	01-Jun-2021	136.3 KiB	3,139	2,864
test_SearchIO_fasta_m10_index.py	H A D	01-Jun-2021	2.1 KiB	62	41
test_SearchIO_hhsuite2_text.py	H A D	01-Jun-2021	21.3 KiB	550	462
test_SearchIO_hmmer2_text.py	H A D	01-Jun-2021	22.3 KiB	541	464
test_SearchIO_hmmer2_text_index.py	H A D	01-Jun-2021	23.2 KiB	513	406
test_SearchIO_hmmer3_domtab.py	H A D	01-Jun-2021	27.2 KiB	650	588
test_SearchIO_hmmer3_domtab_index.py	H A D	01-Jun-2021	5.3 KiB	84	61
test_SearchIO_hmmer3_tab.py	H A D	01-Jun-2021	19.9 KiB	498	440
test_SearchIO_hmmer3_tab_index.py	H A D	01-Jun-2021	4.4 KiB	81	57
test_SearchIO_hmmer3_text.py	H A D	01-Jun-2021	114.3 KiB	2,612	2,345
test_SearchIO_hmmer3_text_index.py	H A D	01-Jun-2021	18.3 KiB	341	276
test_SearchIO_interproscan_xml.py	H A D	01-Jun-2021	2.7 KiB	88	62
test_SearchIO_legacy.py	H A D	01-Jun-2021	6.2 KiB	180	148
test_SearchIO_model.py	H A D	01-Jun-2021	65.6 KiB	1,584	1,211
test_SearchIO_write.py	H A D	01-Jun-2021	9.2 KiB	228	180
test_SeqFeature.py	H A D	01-Jun-2021	12.6 KiB	325	263
test_SeqIO.py	H A D	01-Jun-2021	224.4 KiB	5,799	5,493
test_SeqIO_AbiIO.py	H A D	01-Jun-2021	564.4 KiB	544	491
test_SeqIO_FastaIO.py	H A D	01-Jun-2021	9.2 KiB	236	180
test_SeqIO_Gck.py	H A D	01-Jun-2021	13.4 KiB	400	358
test_SeqIO_Insdc.py	H A D	01-Jun-2021	4.4 KiB	123	93
test_SeqIO_NibIO.py	H A D	01-Jun-2021	2.1 KiB	64	54
test_SeqIO_PdbIO.py	H A D	01-Jun-2021	7.4 KiB	206	156
test_SeqIO_QualityIO.py	H A D	01-Jun-2021	42.6 KiB	1,121	979
test_SeqIO_SeqXML.py	H A D	01-Jun-2021	9.2 KiB	236	183
test_SeqIO_SnapGene.py	H A D	01-Jun-2021	8.7 KiB	256	224
test_SeqIO_TwoBitIO.py	H A D	01-Jun-2021	18.7 KiB	474	423
test_SeqIO_Xdna.py	H A D	01-Jun-2021	8.1 KiB	236	194
test_SeqIO_features.py	H A D	01-Jun-2021	54.8 KiB	1,291	1,094
test_SeqIO_index.py	H A D	01-Jun-2021	29.3 KiB	775	618
test_SeqIO_online.py	H A D	01-Jun-2021	3.5 KiB	106	80
test_SeqIO_write.py	H A D	01-Jun-2021	10.5 KiB	311	276
test_SeqRecord.py	H A D	01-Jun-2021	22.1 KiB	603	516
test_SeqUtils.py	H A D	01-Jun-2021	12 KiB	306	271
test_Seq_objs.py	H A D	01-Jun-2021	66 KiB	1,474	1,290
test_SffIO.py	H A D	01-Jun-2021	21.2 KiB	577	484
test_SubsMat.py	H A D	01-Jun-2021	79.5 KiB	1,672	1,638
test_SwissProt.py	H A D	01-Jun-2021	154.1 KiB	3,550	3,125
test_TCoffee_tool.py	H A D	01-Jun-2021	6.8 KiB	177	151
test_TogoWS.py	H A D	01-Jun-2021	22.1 KiB	638	529
test_TreeConstruction.py	H A D	01-Jun-2021	12.9 KiB	338	271
test_Tutorial.py	H A D	01-Jun-2021	9.3 KiB	283	180
test_UniGene.py	H A D	01-Jun-2021	73.2 KiB	1,218	1,185
test_UniProt_GOA.py	H A D	01-Jun-2021	7.5 KiB	188	137
test_Uniprot.py	H A D	01-Jun-2021	25.1 KiB	602	528
test_Wise.py	H A D	01-Jun-2021	2.7 KiB	84	60
test_XXmotif_tool.py	H A D	01-Jun-2021	6 KiB	183	128
test_align.py	H A D	01-Jun-2021	27.9 KiB	995	937
test_align_substitution_matrices.py	H A D	01-Jun-2021	136.8 KiB	2,399	2,347
test_bgzf.py	H A D	01-Jun-2021	16.1 KiB	423	313
test_cellosaurus.py	H A D	01-Jun-2021	6.8 KiB	139	125
test_codonalign.py	H A D	01-Jun-2021	16.9 KiB	474	405
test_geo.py	H A D	01-Jun-2021	282.5 KiB	4,988	4,921
test_kNN.py	H A D	01-Jun-2021	3.4 KiB	114	89
test_mmtf.py	H A D	01-Jun-2021	10.2 KiB	236	193
test_mmtf_online.py	H A D	01-Jun-2021	1.1 KiB	36	20
test_motifs.py	H A D	01-Jun-2021	131.6 KiB	2,310	2,247
test_motifs_online.py	H A D	01-Jun-2021	1.7 KiB	57	33
test_pairwise2.py	H A D	01-Jun-2021	844	29	13
test_pairwise2_no_C.py	H A D	01-Jun-2021	1.1 KiB	34	18
test_pairwise_aligner.py	H A D	01-Jun-2021	149.8 KiB	4,293	4,138
test_pairwise_alignment_map.py	H A D	01-Jun-2021	26.4 KiB	570	539
test_phenotype.py	H A D	01-Jun-2021	12 KiB	318	255
test_phenotype_fit.py	H A D	01-Jun-2021	2.4 KiB	79	53
test_phyml_tool.py	H A D	01-Jun-2021	2.6 KiB	83	51
test_prodoc.py	H A D	01-Jun-2021	56.6 KiB	1,361	1,212
test_prosite.py	H A D	01-Jun-2021	245.1 KiB	3,498	3,471
test_psw.py	H A D	01-Jun-2021	4.7 KiB	139	102
test_raxml_tool.py	H A D	01-Jun-2021	2.2 KiB	74	48
test_samtools_tool.py	H A D	01-Jun-2021	10.5 KiB	277	213
test_seq.py	H A D	01-Jun-2021	46.7 KiB	1,286	1,068
test_translate.py	H A D	01-Jun-2021	3.2 KiB	94	77