1 /**
2 * \file addModelHistory.cpp
3 * \brief adds Model History to a model
4 * \author Sarah Keating
5 *
6 * <!--------------------------------------------------------------------------
7 * This sample program is distributed under a different license than the rest
8 * of libSBML. This program uses the open-source MIT license, as follows:
9 *
10 * Copyright (c) 2013-2018 by the California Institute of Technology
11 * (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
12 * and the University of Heidelberg (Germany), with support from the National
13 * Institutes of Health (USA) under grant R01GM070923. All rights reserved.
14 *
15 * Permission is hereby granted, free of charge, to any person obtaining a
16 * copy of this software and associated documentation files (the "Software"),
17 * to deal in the Software without restriction, including without limitation
18 * the rights to use, copy, modify, merge, publish, distribute, sublicense,
19 * and/or sell copies of the Software, and to permit persons to whom the
20 * Software is furnished to do so, subject to the following conditions:
21 *
22 * The above copyright notice and this permission notice shall be included in
23 * all copies or substantial portions of the Software.
24 *
25 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
26 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
27 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
28 * THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
29 * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
30 * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
31 * DEALINGS IN THE SOFTWARE.
32 *
33 * Neither the name of the California Institute of Technology (Caltech), nor
34 * of the European Bioinformatics Institute (EMBL-EBI), nor of the University
35 * of Heidelberg, nor the names of any contributors, may be used to endorse
36 * or promote products derived from this software without specific prior
37 * written permission.
38 * ------------------------------------------------------------------------ -->
39 */
40
41
42 #include <iostream>
43 #include <sbml/SBMLTypes.h>
44
45 #include <sbml/xml/XMLNode.h>
46 #include <sbml/annotation/ModelHistory.h>
47 using namespace std;
48 LIBSBML_CPP_NAMESPACE_USE
49
printStatus(std::string message,int status)50 void printStatus(std::string message, int status)
51 {
52 std::string statusString;
53 switch(status)
54 {
55 case LIBSBML_OPERATION_SUCCESS:
56 statusString = "succeeded";
57 break;
58 case LIBSBML_INVALID_OBJECT:
59 statusString = "invalid object";
60 break;
61 case LIBSBML_OPERATION_FAILED:
62 statusString = "operation failed";
63 break;
64 default:
65 statusString = "unknown";
66 break;
67 }
68
69 cout << message << statusString << endl;
70
71 }
72
73 int
main(int argc,char * argv[])74 main (int argc, char *argv[])
75 {
76
77 SBMLDocument* d;
78 unsigned int errors;
79
80 if (argc != 3)
81 {
82 cout << endl
83 << " usage: addModelHistory <input-filename> <output-filename>" << endl
84 << endl;
85 return 2;
86 }
87
88
89 d = readSBML(argv[1]);
90 errors = d->getNumErrors();
91
92 if (errors > 0)
93 {
94 cout << "Read Error(s):" << endl;
95 d->printErrors(cout);
96
97 cout << "Correct the above and re-run." << endl;
98 }
99 else
100 {
101 ModelHistory * h = new ModelHistory();
102
103 ModelCreator *c = new ModelCreator();
104 c->setFamilyName("Keating");
105 c->setGivenName("Sarah");
106 c->setEmail("sbml-team@caltech.edu");
107 c->setOrganization("University of Hertfordshire");
108
109 int status = h->addCreator(c);
110 printStatus("Status for addCreator: ", status);
111
112
113 Date * date = new Date("1999-11-13T06:54:32");
114 Date * date2 = new Date("2007-11-30T06:54:00-02:00");
115
116 status = h->setCreatedDate(date);
117 printStatus("Set created date: ", status);
118
119 status = h->setModifiedDate(date2);
120 printStatus("Set modified date: ", status);
121
122 status = d->getModel()->setModelHistory(h);
123 printStatus("Set model history: ", status);
124
125 delete h;
126 delete c;
127 delete date;
128 delete date2;
129 writeSBML(d, argv[2]);
130 }
131
132 delete d;
133 return errors;
134 }
135
136